Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46679 * 2 1 4 4 C 1.52998 * 109.47153 * 119.99807 * 2 1 3 5 5 N 1.46904 * 109.47322 * 65.00651 * 4 2 1 6 6 C 1.46897 * 110.99992 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46932 * 179.97438 * 6 5 4 8 8 C 1.54360 * 112.37553 * 299.75701 * 7 6 5 9 9 C 1.54850 * 104.23073 * 260.57874 * 8 7 6 10 10 C 1.54847 * 102.90067 * 322.05801 * 9 8 7 11 11 C 1.54154 * 104.32716 * 38.09569 * 10 9 8 12 12 H 1.08994 * 111.82600 * 98.75592 * 11 10 9 13 13 C 1.54334 * 108.85879 * 222.84567 * 11 10 9 14 14 N 1.48118 * 104.69614 * 137.44656 * 13 11 10 15 15 C 1.34778 * 127.84199 * 140.27966 * 14 13 11 16 16 O 1.21282 * 119.99759 * 179.97438 * 15 14 13 17 17 C 1.50702 * 120.00067 * 359.97175 * 15 14 13 18 18 S 1.80994 * 109.47162 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00097 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00027 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00304 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48489 * 109.47391 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46976 * 119.99494 * 23 21 19 26 26 H 1.48504 * 109.46651 * 239.99320 * 23 21 19 27 27 C 1.48114 * 104.31142 * 320.25322 * 14 13 11 28 28 H 1.08995 * 109.46989 * 299.99360 * 1 2 3 29 29 H 1.08993 * 109.47484 * 60.00219 * 1 2 3 30 30 H 1.09013 * 109.46550 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47731 * 240.00238 * 2 1 3 32 32 H 1.09002 * 109.46729 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47418 * 299.99775 * 3 2 1 34 34 H 1.09002 * 109.47277 * 60.00012 * 3 2 1 35 35 H 1.09001 * 109.47480 * 305.00363 * 4 2 1 36 36 H 1.09003 * 109.47133 * 185.00092 * 4 2 1 37 37 H 1.00897 * 110.99709 * 56.04465 * 5 4 2 38 38 H 1.09005 * 109.47292 * 60.00140 * 6 5 4 39 39 H 1.08996 * 109.47314 * 299.99478 * 6 5 4 40 40 H 1.08998 * 110.38577 * 141.96537 * 8 7 6 41 41 H 1.08998 * 110.64122 * 19.31830 * 8 7 6 42 42 H 1.09002 * 110.76049 * 203.65234 * 9 8 7 43 43 H 1.08997 * 110.75518 * 80.45952 * 9 8 7 44 44 H 1.09000 * 110.46031 * 156.80823 * 10 9 8 45 45 H 1.08994 * 110.45752 * 279.25502 * 10 9 8 46 46 H 1.09003 * 110.38633 * 256.25378 * 13 11 10 47 47 H 1.08997 * 110.38968 * 18.63971 * 13 11 10 48 48 H 1.09005 * 109.47257 * 300.00168 * 17 15 14 49 49 H 1.09002 * 109.46778 * 60.00044 * 17 15 14 50 50 H 0.96991 * 120.00660 * 180.02562 * 22 21 19 51 51 H 1.09004 * 110.38887 * 158.55085 * 27 14 13 52 52 H 1.08993 * 110.39544 * 280.82293 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6515 -2.1367 1.1904 6 6 2.1259 -2.8625 2.3762 7 6 1.7027 -4.3296 2.2793 8 6 0.1697 -4.4953 2.2064 9 6 -0.2430 -4.8599 3.6536 10 6 0.9106 -5.7812 4.1205 11 6 2.1755 -5.1503 3.5053 12 1 2.7118 -4.5329 4.2259 13 6 3.0669 -6.2739 2.9356 14 7 3.5386 -5.7543 1.6312 15 6 4.7643 -5.8808 1.0852 16 8 4.9972 -5.3950 -0.0014 17 6 5.8455 -6.6259 1.8248 18 16 7.3637 -6.6213 0.8395 19 6 8.4260 -7.5327 1.9099 20 1 8.0544 -7.8993 2.8554 21 6 9.7405 -7.7785 1.5384 22 7 10.1936 -7.3312 0.3863 23 14 10.8669 -8.7440 2.6736 24 1 10.1218 -9.1308 3.8984 25 1 11.3428 -9.9659 1.9766 26 1 12.0316 -7.9024 3.0482 27 6 2.3574 -5.0648 1.0629 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6765 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 1.9884 -2.5692 0.3434 38 1 1.6922 -2.4180 3.2720 39 1 3.2128 -2.8004 2.4295 40 1 -0.0929 -5.3011 1.5209 41 1 -0.3034 -3.5628 1.8988 42 1 -1.1924 -5.3953 3.6614 43 1 -0.2999 -3.9666 4.2757 44 1 0.9778 -5.7863 5.2084 45 1 0.7657 -6.7937 3.7438 46 1 3.9120 -6.4609 3.5981 47 1 2.4855 -7.1849 2.7938 48 1 6.0326 -6.1391 2.7820 49 1 5.5262 -7.6539 1.9962 50 1 11.1121 -7.5033 0.1266 51 1 2.6668 -4.3388 0.3110 52 1 1.6672 -5.7885 0.6294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112264293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = -54.122274 kcal Electronic energy + Delta-G solvation = -28072.647222 eV Core-core repulsion = 24390.090917 eV Total energy + Delta-G solvation = -3682.556306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66037 -38.38183 -37.35023 -34.73734 -34.13588 -32.43959 -30.77220 -30.03498 -28.81424 -27.31764 -26.22350 -25.76678 -25.41746 -24.27669 -22.63171 -20.76561 -20.48999 -19.17789 -18.75482 -17.62066 -16.82360 -16.16755 -15.82329 -15.52388 -15.40726 -15.08428 -14.86994 -14.81491 -14.43238 -14.05461 -13.91081 -13.55771 -13.42438 -13.29854 -12.86343 -12.66871 -12.55464 -12.43755 -12.22723 -12.13881 -11.94728 -11.73218 -11.41021 -11.25496 -11.20466 -11.08875 -11.08048 -11.01653 -10.91710 -10.88131 -10.82534 -10.75001 -10.60627 -10.52527 -9.81147 -9.37426 -9.08473 -8.61277 -8.53917 -8.23904 -6.51304 -6.22734 -3.93354 2.91181 3.05502 3.20616 3.25584 3.30462 3.61425 3.82956 4.14783 4.19638 4.27322 4.47836 4.60226 4.74269 4.91650 4.93313 4.95385 4.97382 5.04801 5.10685 5.12464 5.18601 5.21947 5.32727 5.41292 5.43328 5.46463 5.48699 5.50786 5.53191 5.60299 5.66009 5.67138 5.68294 5.73215 5.79051 5.82686 5.84345 5.88883 5.90257 5.92675 6.05885 6.10363 6.12429 6.13534 6.16247 6.19101 6.39197 6.81032 7.17033 7.58816 7.74412 8.34452 8.56295 9.22618 10.84792 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.002623 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.905801 B =10673.857825 C =12324.463986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.147 4.147 4 C 0.063 3.937 5 N -0.686 5.686 6 C 0.081 3.919 7 C -0.067 4.067 8 C -0.105 4.105 9 C -0.123 4.123 10 C -0.117 4.117 11 C -0.100 4.100 12 H 0.087 0.913 13 C 0.106 3.894 14 N -0.630 5.630 15 C 0.553 3.447 16 O -0.518 6.518 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.115 3.885 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.341 0.659 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.268 0.732 51 H 0.075 0.925 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.934 10.333 6.736 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.067 4.067 5 N -0.317 5.317 6 C -0.048 4.048 7 C -0.068 4.068 8 C -0.143 4.143 9 C -0.161 4.161 10 C -0.155 4.155 11 C -0.120 4.120 12 H 0.105 0.895 13 C -0.017 4.017 14 N -0.366 5.366 15 C 0.342 3.658 16 O -0.392 6.392 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.008 4.008 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.160 0.840 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.078 0.922 51 H 0.094 0.906 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.915 11.162 5.190 26.897 hybrid contribution 1.551 -1.301 1.880 2.762 sum -22.364 9.861 7.070 25.444 Atomic orbital electron populations 1.21718 0.94533 1.02464 1.00690 1.21111 0.96743 0.95734 0.97862 1.21818 1.01034 0.95919 1.01761 1.22017 0.97639 0.88552 0.98447 1.60537 1.63846 1.02253 1.05087 1.21764 0.97461 0.91823 0.93774 1.22462 0.95946 0.93816 0.94590 1.22383 0.93067 1.02323 0.96484 1.22499 0.97800 0.99157 0.96612 1.22454 0.93747 0.99095 1.00235 1.22747 0.96329 0.96261 0.96617 0.89509 1.22562 0.98128 0.96093 0.84941 1.49022 1.10270 1.56606 1.20744 1.20000 0.80753 0.79471 0.85580 1.90705 1.80003 1.47777 1.20722 1.23496 1.00219 1.02031 1.03909 1.85398 0.99232 1.72724 1.26096 1.22893 0.98336 1.40239 1.06729 0.90908 1.24998 0.97173 0.95780 0.95671 1.70024 1.16534 1.43429 1.20293 0.86112 0.79947 0.79332 0.80082 1.19618 1.20535 1.20560 1.22793 0.86775 0.95720 0.95514 0.93238 0.93569 0.91484 0.91279 0.92721 0.92531 0.92737 0.91166 0.95219 0.83958 0.90762 0.94866 0.91607 0.89825 0.91699 0.91663 0.91556 0.91122 0.90175 0.90948 0.89428 0.89346 0.92227 0.90619 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.08 37.16 0.34 -0.70 16 2 C -0.10 -0.78 3.06 -90.62 -0.28 -1.06 16 3 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 4 C 0.06 0.56 5.07 -3.82 -0.02 0.54 16 5 N -0.69 -6.29 5.27 -113.78 -0.60 -6.89 16 6 C 0.08 0.78 4.76 -3.83 -0.02 0.76 16 7 C -0.07 -0.61 0.76 -150.90 -0.11 -0.73 16 8 C -0.10 -0.81 5.93 -25.04 -0.15 -0.96 16 9 C -0.12 -0.83 6.89 -24.78 -0.17 -1.00 16 10 C -0.12 -0.83 6.36 -25.15 -0.16 -0.99 16 11 C -0.10 -0.89 3.51 -88.30 -0.31 -1.20 16 12 H 0.09 0.78 7.88 -51.93 -0.41 0.37 16 13 C 0.11 1.17 6.45 -2.45 -0.02 1.15 16 14 N -0.63 -9.21 3.31 -168.05 -0.56 -9.77 16 15 C 0.55 10.87 7.93 -10.98 -0.09 10.79 16 16 O -0.52 -12.17 16.13 5.56 0.09 -12.08 16 17 C -0.15 -3.05 5.13 36.01 0.18 -2.87 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 20 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.12 1.39 6.14 -1.28 -0.01 1.38 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.55 7.75 -51.92 -0.40 0.15 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.34 3.45 7.01 -39.29 -0.28 3.17 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.51 7.23 -51.93 -0.38 0.14 16 41 H 0.08 0.68 7.41 -51.93 -0.38 0.30 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.49 7.19 -51.93 -0.37 0.12 16 46 H 0.08 0.89 7.30 -51.93 -0.38 0.51 16 47 H 0.07 0.71 7.19 -51.93 -0.37 0.34 16 48 H 0.09 1.71 7.95 -51.91 -0.41 1.29 16 49 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 50 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.08 1.02 6.15 -51.93 -0.32 0.70 16 52 H 0.07 0.80 7.28 -51.93 -0.38 0.42 16 LS Contribution 415.10 15.07 6.26 6.26 Total: -1.00 -33.02 415.10 -11.13 -44.15 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -9.55 Total: -0.02 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.27 Total: -8.66 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.42 Total: -42.23 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.02 -11.13 -44.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112264293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.973 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds