Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46679 * 2 1 4 4 C 1.52998 * 109.47153 * 119.99807 * 2 1 3 5 5 N 1.46904 * 109.47322 * 65.00651 * 4 2 1 6 6 C 1.46897 * 110.99992 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46932 * 179.97438 * 6 5 4 8 8 C 1.54360 * 112.37553 * 299.75701 * 7 6 5 9 9 C 1.54850 * 104.23073 * 260.57874 * 8 7 6 10 10 C 1.54847 * 102.90067 * 322.05801 * 9 8 7 11 11 C 1.54154 * 104.32716 * 38.09569 * 10 9 8 12 12 H 1.08994 * 111.82600 * 98.75592 * 11 10 9 13 13 C 1.54334 * 108.85879 * 222.84567 * 11 10 9 14 14 N 1.48118 * 104.69614 * 137.44656 * 13 11 10 15 15 C 1.34778 * 127.84199 * 140.27966 * 14 13 11 16 16 O 1.21282 * 119.99759 * 179.97438 * 15 14 13 17 17 C 1.50702 * 120.00067 * 359.97175 * 15 14 13 18 18 S 1.80994 * 109.47162 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00097 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00027 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00304 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48489 * 109.47391 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46976 * 119.99494 * 23 21 19 26 26 H 1.48504 * 109.46651 * 239.99320 * 23 21 19 27 27 C 1.48114 * 104.31142 * 320.25322 * 14 13 11 28 28 H 1.08995 * 109.46989 * 299.99360 * 1 2 3 29 29 H 1.08993 * 109.47484 * 60.00219 * 1 2 3 30 30 H 1.09013 * 109.46550 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47731 * 240.00238 * 2 1 3 32 32 H 1.09002 * 109.46729 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47418 * 299.99775 * 3 2 1 34 34 H 1.09002 * 109.47277 * 60.00012 * 3 2 1 35 35 H 1.09001 * 109.47480 * 305.00363 * 4 2 1 36 36 H 1.09003 * 109.47133 * 185.00092 * 4 2 1 37 37 H 1.00897 * 110.99709 * 56.04465 * 5 4 2 38 38 H 1.09005 * 109.47292 * 60.00140 * 6 5 4 39 39 H 1.08996 * 109.47314 * 299.99478 * 6 5 4 40 40 H 1.08998 * 110.38577 * 141.96537 * 8 7 6 41 41 H 1.08998 * 110.64122 * 19.31830 * 8 7 6 42 42 H 1.09002 * 110.76049 * 203.65234 * 9 8 7 43 43 H 1.08997 * 110.75518 * 80.45952 * 9 8 7 44 44 H 1.09000 * 110.46031 * 156.80823 * 10 9 8 45 45 H 1.08994 * 110.45752 * 279.25502 * 10 9 8 46 46 H 1.09003 * 110.38633 * 256.25378 * 13 11 10 47 47 H 1.08997 * 110.38968 * 18.63971 * 13 11 10 48 48 H 1.09005 * 109.47257 * 300.00168 * 17 15 14 49 49 H 1.09002 * 109.46778 * 60.00044 * 17 15 14 50 50 H 0.96991 * 120.00660 * 180.02562 * 22 21 19 51 51 H 1.09004 * 110.38887 * 158.55085 * 27 14 13 52 52 H 1.08993 * 110.39544 * 280.82293 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6515 -2.1367 1.1904 6 6 2.1259 -2.8625 2.3762 7 6 1.7027 -4.3296 2.2793 8 6 0.1697 -4.4953 2.2064 9 6 -0.2430 -4.8599 3.6536 10 6 0.9106 -5.7812 4.1205 11 6 2.1755 -5.1503 3.5053 12 1 2.7118 -4.5329 4.2259 13 6 3.0669 -6.2739 2.9356 14 7 3.5386 -5.7543 1.6312 15 6 4.7643 -5.8808 1.0852 16 8 4.9972 -5.3950 -0.0014 17 6 5.8455 -6.6259 1.8248 18 16 7.3637 -6.6213 0.8395 19 6 8.4260 -7.5327 1.9099 20 1 8.0544 -7.8993 2.8554 21 6 9.7405 -7.7785 1.5384 22 7 10.1936 -7.3312 0.3863 23 14 10.8669 -8.7440 2.6736 24 1 10.1218 -9.1308 3.8984 25 1 11.3428 -9.9659 1.9766 26 1 12.0316 -7.9024 3.0482 27 6 2.3574 -5.0648 1.0629 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6765 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 1.9884 -2.5692 0.3434 38 1 1.6922 -2.4180 3.2720 39 1 3.2128 -2.8004 2.4295 40 1 -0.0929 -5.3011 1.5209 41 1 -0.3034 -3.5628 1.8988 42 1 -1.1924 -5.3953 3.6614 43 1 -0.2999 -3.9666 4.2757 44 1 0.9778 -5.7863 5.2084 45 1 0.7657 -6.7937 3.7438 46 1 3.9120 -6.4609 3.5981 47 1 2.4855 -7.1849 2.7938 48 1 6.0326 -6.1391 2.7820 49 1 5.5262 -7.6539 1.9962 50 1 11.1121 -7.5033 0.1266 51 1 2.6668 -4.3388 0.3110 52 1 1.6672 -5.7885 0.6294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112264293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = -73.793227 kcal Electronic energy + Delta-G solvation = -28073.500219 eV Core-core repulsion = 24390.090917 eV Total energy + Delta-G solvation = -3683.409302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63429 -39.74349 -38.10770 -35.83600 -34.84326 -34.61673 -31.85217 -31.09428 -29.92331 -27.94088 -27.76510 -27.05891 -26.52904 -25.15871 -23.50050 -21.42751 -21.19200 -20.60187 -19.78386 -19.29447 -18.16733 -17.16244 -16.91959 -16.72029 -16.63745 -16.54792 -15.98339 -15.75281 -15.60441 -15.47311 -14.83764 -14.65952 -14.51429 -14.29074 -14.09571 -13.67686 -13.55161 -13.38394 -13.22374 -13.16281 -12.95875 -12.93766 -12.86539 -12.66687 -12.61446 -12.12356 -11.93111 -11.89585 -11.77624 -11.71491 -11.61290 -11.55382 -11.45293 -11.35400 -11.27316 -11.18636 -10.88754 -10.32091 -9.80477 -9.40915 -8.71828 -8.37639 -6.16779 1.20461 1.39715 1.42352 1.51686 1.55037 2.05158 2.24197 2.96534 3.04195 3.19264 3.37200 3.49028 3.74249 3.82411 3.90057 4.06155 4.14661 4.16965 4.19014 4.21943 4.30679 4.36246 4.38881 4.47202 4.53804 4.57714 4.67048 4.70205 4.73409 4.75406 4.80836 4.82973 4.86715 4.93964 5.01859 5.03134 5.06039 5.13571 5.19369 5.25282 5.27388 5.32744 5.38794 5.42903 5.45592 5.51237 5.55263 5.59912 6.02260 6.17050 6.31305 6.41225 7.03374 7.07114 8.72024 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.002623 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.905801 B =10673.857825 C =12324.463986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.065 3.935 5 N -0.678 5.678 6 C 0.085 3.915 7 C -0.057 4.057 8 C -0.098 4.098 9 C -0.117 4.117 10 C -0.111 4.111 11 C -0.095 4.095 12 H 0.088 0.912 13 C 0.098 3.902 14 N -0.622 5.622 15 C 0.550 3.450 16 O -0.569 6.569 17 C -0.119 4.119 18 S -0.151 6.151 19 C -0.544 4.544 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.001 2.999 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.110 3.890 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.011 0.989 37 H 0.335 0.665 38 H 0.088 0.912 39 H 0.004 0.996 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.272 0.728 51 H 0.055 0.945 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.108 9.643 9.465 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.064 4.064 5 N -0.309 5.309 6 C -0.044 4.044 7 C -0.058 4.058 8 C -0.136 4.136 9 C -0.155 4.155 10 C -0.149 4.149 11 C -0.115 4.115 12 H 0.106 0.894 13 C -0.024 4.024 14 N -0.356 5.356 15 C 0.338 3.662 16 O -0.448 6.448 17 C -0.270 4.270 18 S 0.077 5.923 19 C -0.692 4.692 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.012 4.012 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.030 0.970 37 H 0.153 0.847 38 H 0.106 0.894 39 H 0.023 0.977 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.121 0.879 49 H 0.124 0.876 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.155 10.474 7.963 29.278 hybrid contribution 2.091 -1.033 1.035 2.552 sum -24.064 9.441 8.998 27.371 Atomic orbital electron populations 1.21653 0.93650 1.02220 1.01232 1.21098 0.97396 0.95975 0.96877 1.21802 1.00533 0.95495 1.02507 1.22028 0.96595 0.88533 0.99273 1.60606 1.63259 1.02342 1.04664 1.21747 0.95751 0.92488 0.94429 1.22423 0.97026 0.93044 0.93310 1.22334 0.91203 1.02427 0.97642 1.22477 0.98183 0.99388 0.95430 1.22436 0.92340 0.99217 1.00891 1.22755 0.96961 0.95494 0.96283 0.89385 1.22942 0.98812 0.97650 0.83003 1.48965 1.09198 1.55467 1.21969 1.19740 0.82065 0.79352 0.85005 1.90681 1.81198 1.50091 1.22822 1.23281 0.97119 1.03549 1.03012 1.85587 1.03929 1.73326 1.29495 1.23205 0.98852 1.40270 1.06896 0.89966 1.26160 0.98944 0.96723 0.97382 1.70187 1.17177 1.44918 1.22508 0.84879 0.77371 0.77547 0.77981 1.17976 1.19802 1.19861 1.23057 0.85868 0.95780 0.96515 0.92687 0.93004 0.92078 0.92455 0.93524 0.91851 0.91910 0.90299 0.97033 0.84733 0.89409 0.97747 0.91275 0.90024 0.90392 0.91291 0.90301 0.90491 0.90059 0.88862 0.87880 0.87648 0.91932 0.92596 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.08 71.98 0.65 -1.18 16 2 C -0.09 -1.53 3.06 -10.79 -0.03 -1.56 16 3 C -0.15 -2.11 9.19 71.98 0.66 -1.45 16 4 C 0.06 1.16 5.07 86.30 0.44 1.60 16 5 N -0.68 -12.38 5.27 -513.88 -2.71 -15.08 16 6 C 0.09 1.59 4.76 86.30 0.41 2.00 16 7 C -0.06 -0.95 0.76 -49.84 -0.04 -0.99 16 8 C -0.10 -1.26 5.93 31.69 0.19 -1.07 16 9 C -0.12 -1.15 6.89 31.86 0.22 -0.93 16 10 C -0.11 -1.15 6.36 31.62 0.20 -0.95 16 11 C -0.10 -1.46 3.51 -9.29 -0.03 -1.49 16 12 H 0.09 1.38 7.88 -2.39 -0.02 1.36 16 13 C 0.10 1.93 6.45 86.52 0.56 2.49 16 14 N -0.62 -17.89 3.31 -803.99 -2.67 -20.56 16 15 C 0.55 22.08 7.93 87.66 0.70 22.78 16 16 O -0.57 -28.09 16.13 -3.03 -0.05 -28.14 16 17 C -0.12 -4.99 5.13 71.24 0.37 -4.62 16 18 S -0.15 -8.60 20.57 -56.49 -1.16 -9.77 16 19 C -0.54 -31.55 9.50 67.95 0.65 -30.91 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.72 5.49 84.86 0.47 1.19 16 22 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 23 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.11 2.60 6.14 87.29 0.54 3.13 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.93 7.75 -2.38 -0.02 0.91 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.33 7.02 7.01 -89.70 -0.63 6.39 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.07 0.87 7.23 -2.39 -0.02 0.86 16 41 H 0.08 1.13 7.41 -2.39 -0.02 1.11 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.75 7.19 -2.39 -0.02 0.73 16 46 H 0.08 1.61 7.30 -2.39 -0.02 1.60 16 47 H 0.09 1.53 7.19 -2.39 -0.02 1.51 16 48 H 0.10 3.98 7.95 -2.39 -0.02 3.96 16 49 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 50 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 51 H 0.06 1.56 6.15 -2.38 -0.01 1.55 16 52 H 0.09 1.80 7.28 -2.39 -0.02 1.78 16 Total: -1.00 -74.74 415.10 1.92 -72.82 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.25 Total: 23.02 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 5.94 Total: -11.95 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -5.09 Total: -91.93 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -74.74 1.92 -72.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112264293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.971 kcal (2) G-P(sol) polarization free energy of solvation -74.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds