Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46974 * 59.99987 * 4 3 2 6 6 C 1.53006 * 109.47164 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.46684 * 295.00005 * 6 5 4 8 8 C 1.46897 * 111.00073 * 294.30033 * 7 6 5 9 9 C 1.53232 * 109.33849 * 172.74752 * 8 7 6 10 10 N 1.47081 * 108.52066 * 53.82945 * 9 8 7 11 11 C 1.34782 * 120.88228 * 128.79183 * 10 9 8 12 12 O 1.21276 * 120.00574 * 180.02562 * 11 10 9 13 13 C 1.50707 * 119.99907 * 0.02562 * 11 10 9 14 14 S 1.80993 * 109.47075 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99907 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00036 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00017 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99973 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47137 * 90.00527 * 19 17 15 21 21 H 1.48503 * 109.47024 * 210.00098 * 19 17 15 22 22 H 1.48495 * 109.47216 * 329.99997 * 19 17 15 23 23 C 1.47074 * 118.23951 * 308.81216 * 10 9 8 24 24 C 1.46897 * 110.99372 * 169.99730 * 7 6 5 25 25 C 1.53002 * 109.47092 * 300.00168 * 5 4 3 26 26 C 1.52996 * 109.47343 * 60.00063 * 25 5 4 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09000 * 109.46866 * 300.00212 * 4 3 2 34 34 H 1.09001 * 109.47377 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.47140 * 60.00393 * 5 4 3 36 36 H 1.09004 * 109.46637 * 54.99900 * 6 5 4 37 37 H 1.08997 * 109.46818 * 175.00257 * 6 5 4 38 38 H 1.08996 * 109.49308 * 292.70757 * 8 7 6 39 39 H 1.09002 * 109.48979 * 52.78710 * 8 7 6 40 40 H 1.09000 * 109.63354 * 294.12112 * 9 8 7 41 41 H 1.09004 * 109.63110 * 173.53838 * 9 8 7 42 42 H 1.08999 * 109.46962 * 300.00562 * 13 11 10 43 43 H 1.09010 * 109.46838 * 59.99790 * 13 11 10 44 44 H 0.97002 * 119.99960 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.63227 * 291.47587 * 23 10 9 46 46 H 1.09001 * 109.79020 * 170.98717 * 23 10 9 47 47 H 1.09000 * 109.49755 * 307.21294 * 24 7 6 48 48 H 1.09002 * 109.49290 * 67.29936 * 24 7 6 49 49 H 1.09004 * 109.47059 * 299.99666 * 25 5 4 50 50 H 1.09004 * 109.46930 * 180.02562 * 25 5 4 51 51 H 1.09001 * 109.47372 * 179.97438 * 26 25 5 52 52 H 1.09000 * 109.46870 * 59.99786 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.7212 -1.2483 6 6 5.6106 0.7208 -1.2473 7 7 6.1007 2.1004 -1.3678 8 6 5.7450 2.6734 -2.6728 9 6 6.1111 4.1612 -2.6904 10 7 7.5268 4.2985 -2.3159 11 6 8.3777 5.0141 -3.0779 12 8 9.5420 5.1164 -2.7543 13 6 7.8823 5.6871 -4.3320 14 16 9.2517 6.5633 -5.1277 15 6 8.4141 7.2357 -6.5245 16 1 7.3605 7.0452 -6.6655 17 6 9.1086 8.0101 -7.4435 18 7 8.4828 8.5128 -8.4868 19 14 10.9308 8.3400 -7.1991 20 1 11.7208 7.2775 -7.8715 21 1 11.2777 9.6600 -7.7844 22 1 11.2427 8.3450 -5.7473 23 6 7.9895 3.6338 -1.0882 24 6 7.5493 2.1666 -1.1336 25 6 3.5706 -0.7213 -1.2483 26 6 2.0406 -0.7214 -1.2489 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9333 2.4703 0.0011 35 1 3.7176 1.2350 -2.1385 36 1 5.9731 0.2863 -0.3157 37 1 5.9742 0.1312 -2.0889 38 1 6.2929 2.1546 -3.4593 39 1 4.6738 2.5603 -2.8398 40 1 5.4894 4.6999 -1.9754 41 1 5.9564 4.5646 -3.6912 42 1 7.4853 4.9360 -5.0148 43 1 7.0961 6.3977 -4.0767 44 1 8.9680 9.0544 -9.1288 45 1 7.5482 4.1217 -0.2191 46 1 9.0763 3.6883 -1.0262 47 1 7.7868 1.6861 -0.1844 48 1 8.0722 1.6549 -1.9416 49 1 3.9336 -1.2350 -0.3580 50 1 3.9347 -1.2354 -2.1378 51 1 1.6773 -1.7491 -1.2494 52 1 1.6776 -0.2077 -2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112630111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -56.133821 kcal Electronic energy + Delta-G solvation = -27730.756481 eV Core-core repulsion = 24048.112948 eV Total energy + Delta-G solvation = -3682.643533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23845 -39.31873 -37.75186 -35.02054 -32.99760 -32.43944 -31.58289 -31.03548 -29.61044 -28.40739 -26.28350 -25.59582 -23.96424 -23.50289 -22.96633 -21.45687 -20.64763 -19.97856 -19.03483 -17.70992 -16.90953 -16.02086 -15.65596 -15.51414 -15.26784 -15.22816 -14.97809 -14.94782 -14.57068 -14.48532 -14.15866 -13.84190 -13.48904 -13.36007 -13.28841 -13.00481 -12.79255 -12.45570 -12.42260 -12.18856 -12.04310 -11.89529 -11.68428 -11.50285 -11.48579 -11.39824 -11.25757 -11.24492 -11.01034 -10.95669 -10.62082 -10.57869 -10.36270 -10.23186 -9.85780 -9.46572 -9.00635 -8.81559 -8.49172 -8.40386 -6.92145 -6.29141 -4.00828 2.70401 2.93755 3.18146 3.33022 3.50624 3.55394 3.62058 4.25306 4.32916 4.38169 4.42967 4.54083 4.61264 4.72926 4.80033 4.84614 4.91276 5.03087 5.09165 5.09771 5.10535 5.11695 5.17706 5.20566 5.23940 5.26862 5.28447 5.36163 5.41371 5.45015 5.51427 5.54104 5.62484 5.65881 5.67958 5.73437 5.75290 5.76717 5.83891 5.86979 5.91518 5.97145 5.98683 6.02276 6.16023 6.21924 6.52816 6.75351 6.77894 7.49201 7.93889 8.41100 8.44327 9.17112 10.80013 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.002060 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.824975 B =13590.158275 C =14385.129617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.104 4.104 5 C -0.084 4.084 6 C 0.060 3.940 7 N -0.534 5.534 8 C 0.038 3.962 9 C 0.113 3.887 10 N -0.620 5.620 11 C 0.534 3.466 12 O -0.521 6.521 13 C -0.121 4.121 14 S -0.143 6.143 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.119 3.881 24 C 0.043 3.957 25 C -0.115 4.115 26 C -0.112 4.112 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.038 0.962 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.059 0.941 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.477 -19.852 18.780 30.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.153 4.153 4 C -0.142 4.142 5 C -0.102 4.102 6 C -0.068 4.068 7 N -0.259 5.259 8 C -0.091 4.091 9 C -0.011 4.011 10 N -0.356 5.356 11 C 0.321 3.679 12 O -0.395 6.395 13 C -0.271 4.271 14 S 0.083 5.917 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.004 4.004 24 C -0.086 4.086 25 C -0.153 4.153 26 C -0.150 4.150 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.078 0.922 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.955 -19.292 19.445 30.300 hybrid contribution -0.384 -0.437 -1.235 1.365 sum -13.339 -19.729 18.210 29.980 Atomic orbital electron populations 1.21844 0.95523 1.01471 1.01754 1.21150 0.95171 0.96507 0.98294 1.21626 0.96114 0.95832 1.01750 1.21460 0.94334 1.01511 0.96868 1.21202 0.93778 0.95851 0.99409 1.22173 0.95244 0.88494 1.00902 1.61932 1.13538 1.19441 1.30942 1.22559 1.01536 0.95164 0.89847 1.21828 0.81597 0.95671 1.01994 1.48125 1.09747 1.52484 1.25273 1.20302 0.85518 0.77849 0.84182 1.90682 1.17071 1.60166 1.71614 1.23302 1.04480 1.02605 0.96752 1.84797 1.13744 1.64042 1.29083 1.22307 0.99289 1.37225 1.07987 0.89397 1.24714 0.98831 0.93951 0.93840 1.69939 1.36884 1.33082 1.11768 0.86732 0.84911 0.78601 0.81595 1.19239 1.19932 1.15920 1.21591 1.01117 0.90903 0.86769 1.22487 0.87576 0.97142 1.01380 1.21558 0.95625 0.96302 1.01769 1.21563 0.95289 1.00117 0.98018 0.92932 0.92798 0.92724 0.91478 0.92108 0.92241 0.92540 0.90636 0.90990 0.90763 0.94896 0.94220 0.89237 0.90598 0.88926 0.88686 0.88482 0.91949 0.91059 0.88713 0.89732 0.94353 0.92026 0.92196 0.92228 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.19 37.16 0.34 -0.47 16 2 C -0.09 -0.55 2.72 -90.62 -0.25 -0.79 16 3 C -0.12 -0.74 5.20 -26.73 -0.14 -0.88 16 4 C -0.10 -0.71 5.09 -26.73 -0.14 -0.84 16 5 C -0.08 -0.56 2.11 -90.62 -0.19 -0.75 16 6 C 0.06 0.44 4.35 -3.82 -0.02 0.43 16 7 N -0.53 -4.71 4.08 -234.32 -0.96 -5.67 16 8 C 0.04 0.35 5.46 -3.71 -0.02 0.33 16 9 C 0.11 1.23 6.50 -3.61 -0.02 1.21 16 10 N -0.62 -8.63 3.01 -172.46 -0.52 -9.15 16 11 C 0.53 9.83 7.73 -10.98 -0.08 9.75 16 12 O -0.52 -11.45 15.32 5.56 0.09 -11.37 16 13 C -0.12 -2.38 4.52 36.01 0.16 -2.22 16 14 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 15 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 16 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 17 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 19 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 23 C 0.12 1.41 6.59 -3.60 -0.02 1.39 16 24 C 0.04 0.41 5.62 -3.70 -0.02 0.39 16 25 C -0.11 -0.69 5.20 -26.73 -0.14 -0.83 16 26 C -0.11 -0.66 5.20 -26.73 -0.14 -0.80 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.61 7.75 -51.93 -0.40 0.20 16 35 H 0.07 0.53 6.20 -51.93 -0.32 0.21 16 36 H 0.07 0.52 7.97 -51.93 -0.41 0.11 16 37 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.71 6.07 -51.93 -0.32 0.39 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.02 6.02 -51.93 -0.31 0.70 16 42 H 0.09 1.74 7.66 -51.92 -0.40 1.35 16 43 H 0.10 1.78 8.00 -51.91 -0.42 1.37 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.26 7.07 -51.93 -0.37 0.89 16 47 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 48 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -32.65 405.99 -11.37 -44.02 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -9.70 Total: -3.59 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.46 Total: -6.09 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.70 Total: -40.60 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.65 -11.37 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.112 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds