Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46974 * 59.99987 * 4 3 2 6 6 C 1.53006 * 109.47164 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.46684 * 295.00005 * 6 5 4 8 8 C 1.46897 * 111.00073 * 294.30033 * 7 6 5 9 9 C 1.53232 * 109.33849 * 172.74752 * 8 7 6 10 10 N 1.47081 * 108.52066 * 53.82945 * 9 8 7 11 11 C 1.34782 * 120.88228 * 128.79183 * 10 9 8 12 12 O 1.21276 * 120.00574 * 180.02562 * 11 10 9 13 13 C 1.50707 * 119.99907 * 0.02562 * 11 10 9 14 14 S 1.80993 * 109.47075 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99907 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00036 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00017 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99973 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47137 * 90.00527 * 19 17 15 21 21 H 1.48503 * 109.47024 * 210.00098 * 19 17 15 22 22 H 1.48495 * 109.47216 * 329.99997 * 19 17 15 23 23 C 1.47074 * 118.23951 * 308.81216 * 10 9 8 24 24 C 1.46897 * 110.99372 * 169.99730 * 7 6 5 25 25 C 1.53002 * 109.47092 * 300.00168 * 5 4 3 26 26 C 1.52996 * 109.47343 * 60.00063 * 25 5 4 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09000 * 109.46866 * 300.00212 * 4 3 2 34 34 H 1.09001 * 109.47377 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.47140 * 60.00393 * 5 4 3 36 36 H 1.09004 * 109.46637 * 54.99900 * 6 5 4 37 37 H 1.08997 * 109.46818 * 175.00257 * 6 5 4 38 38 H 1.08996 * 109.49308 * 292.70757 * 8 7 6 39 39 H 1.09002 * 109.48979 * 52.78710 * 8 7 6 40 40 H 1.09000 * 109.63354 * 294.12112 * 9 8 7 41 41 H 1.09004 * 109.63110 * 173.53838 * 9 8 7 42 42 H 1.08999 * 109.46962 * 300.00562 * 13 11 10 43 43 H 1.09010 * 109.46838 * 59.99790 * 13 11 10 44 44 H 0.97002 * 119.99960 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.63227 * 291.47587 * 23 10 9 46 46 H 1.09001 * 109.79020 * 170.98717 * 23 10 9 47 47 H 1.09000 * 109.49755 * 307.21294 * 24 7 6 48 48 H 1.09002 * 109.49290 * 67.29936 * 24 7 6 49 49 H 1.09004 * 109.47059 * 299.99666 * 25 5 4 50 50 H 1.09004 * 109.46930 * 180.02562 * 25 5 4 51 51 H 1.09001 * 109.47372 * 179.97438 * 26 25 5 52 52 H 1.09000 * 109.46870 * 59.99786 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.7212 -1.2483 6 6 5.6106 0.7208 -1.2473 7 7 6.1007 2.1004 -1.3678 8 6 5.7450 2.6734 -2.6728 9 6 6.1111 4.1612 -2.6904 10 7 7.5268 4.2985 -2.3159 11 6 8.3777 5.0141 -3.0779 12 8 9.5420 5.1164 -2.7543 13 6 7.8823 5.6871 -4.3320 14 16 9.2517 6.5633 -5.1277 15 6 8.4141 7.2357 -6.5245 16 1 7.3605 7.0452 -6.6655 17 6 9.1086 8.0101 -7.4435 18 7 8.4828 8.5128 -8.4868 19 14 10.9308 8.3400 -7.1991 20 1 11.7208 7.2775 -7.8715 21 1 11.2777 9.6600 -7.7844 22 1 11.2427 8.3450 -5.7473 23 6 7.9895 3.6338 -1.0882 24 6 7.5493 2.1666 -1.1336 25 6 3.5706 -0.7213 -1.2483 26 6 2.0406 -0.7214 -1.2489 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9333 2.4703 0.0011 35 1 3.7176 1.2350 -2.1385 36 1 5.9731 0.2863 -0.3157 37 1 5.9742 0.1312 -2.0889 38 1 6.2929 2.1546 -3.4593 39 1 4.6738 2.5603 -2.8398 40 1 5.4894 4.6999 -1.9754 41 1 5.9564 4.5646 -3.6912 42 1 7.4853 4.9360 -5.0148 43 1 7.0961 6.3977 -4.0767 44 1 8.9680 9.0544 -9.1288 45 1 7.5482 4.1217 -0.2191 46 1 9.0763 3.6883 -1.0262 47 1 7.7868 1.6861 -0.1844 48 1 8.0722 1.6549 -1.9416 49 1 3.9336 -1.2350 -0.3580 50 1 3.9347 -1.2354 -2.1378 51 1 1.6773 -1.7491 -1.2494 52 1 1.6776 -0.2077 -2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -74.811890 kcal Electronic energy + Delta-G solvation = -27731.566423 eV Core-core repulsion = 24048.112948 eV Total energy + Delta-G solvation = -3683.453475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29550 -40.09511 -38.70518 -35.99384 -34.68037 -33.72550 -32.50835 -31.53647 -30.90129 -29.24292 -27.87688 -27.02187 -24.83270 -24.19455 -23.48410 -22.42664 -21.22150 -20.51155 -20.36466 -19.50729 -18.28706 -17.21184 -16.95065 -16.80596 -16.50059 -16.15798 -15.97417 -15.71254 -15.55230 -15.07788 -15.01440 -14.97397 -14.95295 -14.65110 -14.33308 -13.94182 -13.69754 -13.52060 -13.35502 -13.14845 -13.02878 -12.94997 -12.77209 -12.66587 -12.62647 -12.33896 -12.28925 -12.17815 -12.00908 -11.87531 -11.83909 -11.46625 -11.18252 -11.18091 -10.95409 -10.87569 -10.73819 -10.53821 -9.85972 -9.26929 -9.01674 -8.52359 -6.23579 0.95694 1.30350 1.44838 1.48866 1.52828 2.02786 2.24174 2.65925 2.84777 2.85754 3.48916 3.71138 3.86028 3.88653 3.94673 3.98577 4.09662 4.13320 4.22361 4.24063 4.32599 4.37294 4.38697 4.47345 4.53628 4.59430 4.62167 4.69413 4.74263 4.75869 4.78498 4.82656 4.84192 4.89691 4.93569 5.04453 5.07753 5.09947 5.19517 5.27588 5.34440 5.38073 5.44720 5.49701 5.51917 5.63254 5.70024 5.70964 6.02032 6.02427 6.10481 6.25958 6.92717 7.04482 8.59878 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.002060 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.824975 B =13590.158275 C =14385.129617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.114 4.114 4 C -0.099 4.099 5 C -0.078 4.078 6 C 0.063 3.937 7 N -0.532 5.532 8 C 0.043 3.957 9 C 0.107 3.893 10 N -0.608 5.608 11 C 0.534 3.466 12 O -0.564 6.564 13 C -0.105 4.105 14 S -0.177 6.177 15 C -0.528 4.528 16 H 0.063 0.937 17 C 0.046 3.954 18 N -0.915 5.915 19 Si 0.914 3.086 20 H -0.263 1.263 21 H -0.258 1.258 22 H -0.238 1.238 23 C 0.117 3.883 24 C 0.051 3.949 25 C -0.112 4.112 26 C -0.111 4.111 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.029 0.971 38 H 0.027 0.973 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.277 0.723 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.024 0.976 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.064 0.936 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.205 -21.170 20.325 33.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.151 4.151 4 C -0.136 4.136 5 C -0.097 4.097 6 C -0.065 4.065 7 N -0.256 5.256 8 C -0.086 4.086 9 C -0.016 4.016 10 N -0.342 5.342 11 C 0.322 3.678 12 O -0.443 6.443 13 C -0.256 4.256 14 S 0.050 5.950 15 C -0.675 4.675 16 H 0.081 0.919 17 C -0.160 4.160 18 N -0.553 5.553 19 Si 0.736 3.264 20 H -0.187 1.187 21 H -0.182 1.182 22 H -0.162 1.162 23 C -0.005 4.005 24 C -0.078 4.078 25 C -0.150 4.150 26 C -0.149 4.149 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.126 0.874 48 H 0.043 0.957 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.736 -20.638 21.006 32.494 hybrid contribution -0.331 -0.128 -1.624 1.663 sum -14.067 -20.766 19.382 31.698 Atomic orbital electron populations 1.21836 0.95256 1.01736 1.01703 1.21133 0.95403 0.96127 0.98289 1.21602 0.95868 0.96140 1.01532 1.21390 0.94505 1.00832 0.96878 1.21143 0.93149 0.96255 0.99110 1.22195 0.95660 0.87447 1.01178 1.61961 1.12854 1.20439 1.30389 1.22515 1.02467 0.93745 0.89828 1.22088 0.79777 0.97221 1.02472 1.48158 1.10439 1.50668 1.24958 1.20025 0.85375 0.78343 0.84105 1.90666 1.18812 1.62163 1.72620 1.23264 1.02201 1.02733 0.97414 1.84724 1.16924 1.65042 1.28298 1.22434 0.98478 1.37274 1.09327 0.91858 1.25553 1.02937 0.93845 0.93645 1.70013 1.38682 1.33951 1.12670 0.85875 0.79951 0.79212 0.81382 1.18731 1.18231 1.16180 1.21760 1.00380 0.92361 0.86039 1.22417 0.87922 0.95310 1.02139 1.21529 0.95669 0.95792 1.01969 1.21550 0.95177 1.00339 0.97787 0.92529 0.92663 0.92976 0.91448 0.92564 0.92237 0.92467 0.91635 0.91493 0.89874 0.95280 0.95438 0.87381 0.88885 0.88993 0.87282 0.87010 0.91347 0.89505 0.90381 0.87416 0.95728 0.91651 0.92179 0.91773 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.19 71.98 0.66 -0.74 16 2 C -0.09 -0.91 2.72 -10.79 -0.03 -0.94 16 3 C -0.11 -1.25 5.20 30.60 0.16 -1.09 16 4 C -0.10 -1.13 5.09 30.60 0.16 -0.97 16 5 C -0.08 -0.86 2.11 -10.79 -0.02 -0.88 16 6 C 0.06 0.78 4.35 86.30 0.38 1.15 16 7 N -0.53 -8.10 4.08 -895.24 -3.66 -11.76 16 8 C 0.04 0.71 5.46 86.38 0.47 1.18 16 9 C 0.11 2.11 6.50 86.35 0.56 2.67 16 10 N -0.61 -16.08 3.01 -817.93 -2.46 -18.54 16 11 C 0.53 19.35 7.73 87.66 0.68 20.03 16 12 O -0.56 -24.88 15.32 -3.02 -0.05 -24.92 16 13 C -0.11 -4.09 4.52 71.24 0.32 -3.77 16 14 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 15 C -0.53 -30.83 10.04 67.95 0.68 -30.15 16 16 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 17 C 0.05 2.69 5.50 84.86 0.47 3.16 16 18 N -0.92 -55.73 13.97 21.65 0.30 -55.43 16 19 Si 0.91 45.26 27.74 68.60 1.90 47.16 16 20 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 23 C 0.12 2.59 6.59 86.35 0.57 3.15 16 24 C 0.05 0.87 5.62 86.39 0.49 1.36 16 25 C -0.11 -1.11 5.20 30.59 0.16 -0.95 16 26 C -0.11 -1.10 5.20 30.59 0.16 -0.94 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.90 7.75 -2.39 -0.02 0.88 16 35 H 0.07 0.83 6.20 -2.39 -0.01 0.81 16 36 H 0.08 0.93 7.97 -2.39 -0.02 0.91 16 37 H 0.03 0.40 8.12 -2.39 -0.02 0.38 16 38 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 1.43 6.07 -2.39 -0.01 1.42 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.85 6.02 -2.38 -0.01 1.83 16 42 H 0.11 3.92 7.66 -2.40 -0.02 3.90 16 43 H 0.11 4.00 8.00 -2.39 -0.02 3.98 16 44 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 46 H 0.08 2.04 7.07 -2.39 -0.02 2.02 16 47 H 0.11 1.39 7.99 -2.39 -0.02 1.37 16 48 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 51 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -70.50 405.99 1.67 -68.83 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.82 Total: 12.48 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.86 Total: -7.73 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -5.82 Total: -85.73 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -70.50 1.67 -68.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.981 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds