Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47114 * 179.97438 * 7 6 5 9 9 C 1.48566 * 110.99955 * 169.99828 * 8 7 6 10 10 C 1.54383 * 104.59394 * 200.95887 * 9 8 7 11 11 H 1.08993 * 117.60613 * 244.71730 * 10 9 8 12 12 C 1.54267 * 105.05921 * 23.85558 * 10 9 8 13 13 H 1.08994 * 121.78508 * 222.12619 * 12 10 9 14 14 C 1.48568 * 110.99967 * 54.58281 * 8 7 6 15 15 C 1.53008 * 118.12584 * 89.19766 * 10 9 8 16 16 H 1.09003 * 117.44264 * 15.97647 * 15 10 9 17 17 N 1.46497 * 117.44311 * 160.68290 * 15 10 9 18 18 C 1.34772 * 120.00243 * 204.99484 * 17 15 10 19 19 O 1.21285 * 119.99647 * 0.02562 * 18 17 15 20 20 C 1.50693 * 120.00295 * 180.02562 * 18 17 15 21 21 S 1.81003 * 109.47187 * 180.02562 * 20 18 17 22 22 C 1.76202 * 99.99742 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00619 * 0.02562 * 22 21 20 24 24 C 1.38798 * 119.99554 * 179.97438 * 22 21 20 25 25 N 1.31631 * 119.99866 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00596 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47439 * 89.99451 * 26 24 22 28 28 H 1.48498 * 109.47552 * 210.00369 * 26 24 22 29 29 H 1.48507 * 109.46589 * 329.99767 * 26 24 22 30 30 H 1.08992 * 109.47559 * 60.00304 * 1 2 3 31 31 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47261 * 299.99767 * 1 2 3 33 33 H 1.09001 * 109.46611 * 239.99957 * 2 1 3 34 34 H 1.08998 * 109.46884 * 119.99688 * 2 1 3 35 35 H 1.09000 * 109.47611 * 59.99728 * 3 2 1 36 36 H 1.09001 * 109.46832 * 300.00025 * 3 2 1 37 37 H 1.08996 * 109.47452 * 60.00000 * 4 3 2 38 38 H 1.09001 * 109.46997 * 299.99574 * 4 3 2 39 39 H 1.09001 * 109.47502 * 60.00153 * 5 4 3 40 40 H 1.09001 * 109.47289 * 299.99950 * 5 4 3 41 41 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 42 42 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 43 43 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 44 44 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 45 45 H 1.08996 * 110.41340 * 319.73874 * 9 8 7 46 46 H 1.08997 * 110.41002 * 82.06616 * 9 8 7 47 47 H 1.08997 * 110.40463 * 277.81954 * 14 8 7 48 48 H 1.08991 * 110.40854 * 40.26091 * 14 8 7 49 49 H 0.97004 * 119.99881 * 25.00222 * 17 15 10 50 50 H 1.09007 * 109.47463 * 300.00600 * 20 18 17 51 51 H 1.09002 * 109.47079 * 60.00439 * 20 18 17 52 52 H 0.97006 * 120.00343 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6100 2.8851 0.0000 7 6 6.1199 4.3276 0.0013 8 7 7.5889 4.3276 0.0019 9 6 8.1214 5.6937 -0.2377 10 6 9.5635 5.4666 -0.7398 11 1 10.3790 5.8308 -0.1152 12 6 9.5637 4.0396 -1.3260 13 1 10.3861 3.3465 -1.1493 14 6 8.1218 3.5247 -1.1288 15 6 9.7848 5.2942 -2.2440 16 1 8.9769 5.5998 -2.9089 17 7 11.1398 5.5122 -2.7564 18 6 11.3243 5.8736 -4.0415 19 8 10.3684 6.0188 -4.7738 20 6 12.7181 6.0973 -4.5688 21 16 12.6345 6.5698 -6.3141 22 6 14.3512 6.7620 -6.6616 23 1 15.0819 6.5906 -5.8851 24 6 14.7644 7.1326 -7.9337 25 7 16.0468 7.2767 -8.1933 26 14 13.5007 7.4284 -9.2772 27 1 13.0898 8.8554 -9.2649 28 1 14.0941 7.0955 -10.5971 29 1 12.3132 6.5694 -9.0376 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9330 0.9289 -0.8908 38 1 3.9337 0.9286 0.8892 39 1 3.7170 3.3984 0.8904 40 1 3.7162 3.3994 -0.8895 41 1 5.9733 2.3709 0.8898 42 1 5.9733 2.3717 -0.8902 43 1 5.7566 4.8422 -0.8882 44 1 5.7565 4.8406 0.8917 45 1 7.5301 6.2042 -0.9979 46 1 8.1255 6.2680 0.6887 47 1 8.1281 2.4652 -0.8728 48 1 7.5306 3.6958 -2.0283 49 1 11.9043 5.3963 -2.1706 50 1 13.1985 6.8934 -3.9998 51 1 13.2965 5.1789 -4.4680 52 1 16.3356 7.5354 -9.0825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113898819.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -32.698894 kcal Electronic energy + Delta-G solvation = -25682.955013 eV Core-core repulsion = 22001.327695 eV Total energy + Delta-G solvation = -3681.627318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43202 -38.96992 -37.24270 -35.74481 -34.00599 -32.51364 -32.44536 -30.10073 -29.10407 -28.69222 -26.38980 -25.63296 -23.94328 -22.03530 -21.55083 -21.36581 -21.02750 -20.51799 -20.05061 -17.90453 -17.06195 -16.60918 -16.43162 -15.86109 -15.57666 -15.06630 -15.00215 -14.72926 -14.59660 -14.24571 -14.03656 -13.74363 -13.68896 -13.32190 -13.13132 -13.02485 -12.81841 -12.77767 -12.47868 -12.36640 -12.11892 -12.03869 -11.70447 -11.58946 -11.43196 -11.31033 -11.28966 -11.03234 -11.01416 -10.95583 -10.86577 -10.73237 -10.66959 -10.27234 -9.88241 -9.63601 -9.02482 -8.82147 -8.72844 -8.53565 -6.94774 -6.30845 -4.03110 2.63016 2.72857 3.13889 3.31633 3.47393 3.48703 3.52993 3.65944 4.21012 4.30968 4.33782 4.42718 4.43033 4.55604 4.58249 4.61784 4.67604 4.69478 4.84243 4.88044 4.92180 4.95991 5.08311 5.11457 5.14365 5.17683 5.19281 5.23974 5.27577 5.33114 5.41644 5.46012 5.50154 5.53945 5.56541 5.62505 5.66187 5.71244 5.71305 5.75839 5.82845 5.86420 5.88076 5.95221 5.97016 5.98163 6.41814 6.45719 6.67866 7.49660 7.92133 8.37996 8.39801 9.15223 10.78385 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.001459 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.453059 B =19180.172080 C =20274.142583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.120 4.120 7 C 0.043 3.957 8 N -0.511 5.511 9 C 0.063 3.937 10 C -0.169 4.169 11 H 0.118 0.882 12 C -0.178 4.178 13 H 0.120 0.880 14 C 0.064 3.936 15 C 0.120 3.880 16 H 0.135 0.865 17 N -0.706 5.706 18 C 0.536 3.464 19 O -0.516 6.516 20 C -0.124 4.124 21 S -0.140 6.140 22 C -0.523 4.523 23 H 0.089 0.911 24 C 0.097 3.903 25 N -0.880 5.880 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.403 0.597 50 H 0.099 0.901 51 H 0.099 0.901 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.857 -11.052 21.974 34.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.085 4.085 8 N -0.235 5.235 9 C -0.065 4.065 10 C -0.189 4.189 11 H 0.136 0.864 12 C -0.199 4.199 13 H 0.138 0.862 14 C -0.064 4.064 15 C 0.012 3.988 16 H 0.153 0.847 17 N -0.357 5.357 18 C 0.323 3.677 19 O -0.389 6.389 20 C -0.275 4.275 21 S 0.086 5.914 22 C -0.670 4.670 23 H 0.107 0.893 24 C -0.112 4.112 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.237 0.763 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.139 -10.962 21.119 35.347 hybrid contribution 1.070 0.295 -0.180 1.124 sum -25.069 -10.668 20.938 34.361 Atomic orbital electron populations 1.21783 0.95964 1.01578 1.01782 1.21545 0.95817 0.97012 1.01998 1.21633 0.95483 0.96715 1.02023 1.21597 0.95267 0.96721 1.02145 1.21566 0.95057 0.96974 1.02085 1.21654 0.95189 0.96063 1.02828 1.22329 0.87456 0.97554 1.01139 1.65622 1.07842 1.08489 1.41535 1.22615 0.92602 0.90816 1.00486 1.23883 0.98571 1.00590 0.95864 0.86396 1.24621 0.98437 0.90855 1.05962 0.86163 1.22577 0.92520 0.98821 0.92441 1.22323 0.87079 0.98382 0.91000 0.84712 1.45307 1.07063 1.71347 1.12002 1.20332 0.91406 0.75203 0.80772 1.90700 1.42708 1.49178 1.56350 1.23279 0.95420 1.05617 1.03136 1.84802 1.12695 1.90265 1.03604 1.22314 0.89355 1.54281 1.01065 0.89338 1.24702 0.95259 0.93417 0.97831 1.69938 1.13989 1.45386 1.22327 0.86743 0.82957 0.80626 0.81577 1.19181 1.19887 1.15935 0.92761 0.92833 0.92814 0.92057 0.92106 0.92086 0.92059 0.91989 0.91981 0.91935 0.92058 0.91082 0.91761 0.94493 0.90506 0.93248 0.89385 0.89395 0.93247 0.76302 0.88296 0.88247 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.13 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.63 5.21 -26.73 -0.14 -0.77 16 4 C -0.12 -0.65 5.21 -26.73 -0.14 -0.79 16 5 C -0.12 -0.67 5.21 -26.73 -0.14 -0.81 16 6 C -0.12 -0.77 4.93 -26.73 -0.13 -0.90 16 7 C 0.04 0.32 5.06 -3.83 -0.02 0.30 16 8 N -0.51 -4.43 5.49 -229.97 -1.26 -5.69 16 9 C 0.06 0.54 6.29 -2.18 -0.01 0.53 16 10 C -0.17 -1.55 6.91 -89.23 -0.62 -2.17 16 11 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.18 -1.70 7.22 -87.06 -0.63 -2.33 16 13 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.06 0.57 4.94 -2.18 -0.01 0.56 16 15 C 0.12 1.39 6.19 -65.75 -0.41 0.98 16 16 H 0.14 1.82 7.40 -51.93 -0.38 1.43 16 17 N -0.71 -8.93 5.57 -51.70 -0.29 -9.21 16 18 C 0.54 9.36 7.85 -10.99 -0.09 9.27 16 19 O -0.52 -10.96 15.43 5.55 0.09 -10.87 16 20 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 21 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 22 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 23 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 24 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 25 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 26 Si 0.86 21.66 27.74 -169.99 -4.72 16.95 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.24 -5.95 6.74 56.52 0.38 -5.56 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.44 6.84 -51.93 -0.36 0.09 16 43 H 0.04 0.28 7.88 -51.93 -0.41 -0.12 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.44 7.81 -51.93 -0.41 0.04 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.72 7.67 -51.93 -0.40 0.32 16 48 H 0.05 0.47 7.99 -51.93 -0.42 0.05 16 49 H 0.40 3.92 8.83 -40.82 -0.36 3.56 16 50 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 51 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 52 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 427.58 15.07 6.44 6.44 Total: -1.00 -32.64 427.58 -12.56 -45.19 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -9.92 Total: -0.31 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.69 Total: -11.32 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.78 Total: -40.57 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.72 Total: 16.95 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -32.64 -12.56 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113898819.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.492 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds