Wall clock time and date at job start Sat Apr 11 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99998 * 2 1 4 4 C 1.34774 * 120.00475 * 179.72432 * 2 1 3 5 5 O 1.21283 * 119.99852 * 359.97438 * 4 2 1 6 6 C 1.50698 * 120.00477 * 180.02562 * 4 2 1 7 7 C 1.53002 * 109.47432 * 180.02562 * 6 4 2 8 8 C 1.53041 * 109.45605 * 295.02838 * 7 6 4 9 9 C 1.53200 * 109.31156 * 178.60171 * 8 7 6 10 10 N 1.46927 * 108.76363 * 54.65224 * 9 8 7 11 11 C 1.34772 * 120.62716 * 126.36932 * 10 9 8 12 12 O 1.21593 * 119.99832 * 174.98473 * 11 10 9 13 13 N 1.34778 * 120.00197 * 354.97712 * 11 10 9 14 14 C 1.46499 * 119.99990 * 185.07718 * 13 11 10 15 15 C 1.50697 * 109.47156 * 179.97438 * 14 13 11 16 16 O 1.21290 * 119.99900 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00168 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00117 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99515 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99954 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00282 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99891 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47115 * 59.99922 * 22 20 18 24 24 H 1.48503 * 109.47041 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46876 * 299.99698 * 22 20 18 26 26 C 1.46927 * 118.74026 * 306.38289 * 10 9 8 27 27 C 1.53034 * 109.46319 * 174.97467 * 7 6 4 28 28 H 1.09008 * 109.46801 * 90.00435 * 1 2 3 29 29 H 1.08998 * 109.46780 * 210.00074 * 1 2 3 30 30 H 1.08991 * 109.47438 * 330.00100 * 1 2 3 31 31 H 1.09005 * 109.47098 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47518 * 119.99969 * 3 2 1 33 33 H 1.08997 * 109.47299 * 240.00237 * 3 2 1 34 34 H 1.09001 * 109.46936 * 300.00051 * 6 4 2 35 35 H 1.08997 * 109.46924 * 59.99913 * 6 4 2 36 36 H 1.09002 * 109.45841 * 54.99348 * 7 6 4 37 37 H 1.09003 * 109.49952 * 298.56009 * 8 7 6 38 38 H 1.09002 * 109.50119 * 58.66115 * 8 7 6 39 39 H 1.09001 * 109.59143 * 294.86480 * 9 8 7 40 40 H 1.08999 * 109.69885 * 174.50475 * 9 8 7 41 41 H 0.96993 * 119.99817 * 5.07981 * 13 11 10 42 42 H 1.09002 * 109.47560 * 300.00382 * 14 13 11 43 43 H 1.09006 * 109.46988 * 60.00259 * 14 13 11 44 44 H 0.97002 * 120.00016 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00496 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58590 * 293.82500 * 26 10 9 47 47 H 1.08994 * 109.70395 * 173.46725 * 26 10 9 48 48 H 1.09006 * 109.49193 * 301.33229 * 27 7 6 49 49 H 1.08998 * 109.50219 * 61.39403 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0056 5 8 1.5326 -2.2175 0.0111 6 6 3.6459 -1.1671 0.0062 7 6 4.1560 -2.6096 0.0124 8 6 3.7499 -3.2883 1.3225 9 6 4.2318 -4.7424 1.3105 10 7 5.6768 -4.7592 1.0450 11 6 6.5198 -5.4054 1.8746 12 8 7.7006 -5.4899 1.5966 13 7 6.0542 -5.9578 3.0123 14 6 6.9858 -6.5626 3.9676 15 6 6.2169 -7.1032 5.1456 16 8 5.0095 -6.9944 5.1831 17 7 6.8708 -7.7084 6.1568 18 6 6.1712 -8.2007 7.2282 19 1 5.0962 -8.1031 7.2620 20 6 6.8454 -8.8242 8.2710 21 7 8.1535 -8.9425 8.2300 22 14 5.8923 -9.4943 9.7310 23 1 4.9271 -10.5212 9.2630 24 1 6.8366 -10.1079 10.6991 25 1 5.1555 -8.3870 10.3915 26 6 6.1853 -4.0580 -0.1418 27 6 5.6812 -2.6117 -0.1134 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.4891 2.0973 -0.0005 32 1 2.8242 1.3266 0.8900 33 1 2.8241 1.3265 -0.8900 34 1 4.0096 -0.6573 -0.8860 35 1 4.0089 -0.6492 0.8939 36 1 3.7215 -3.1520 -0.8274 37 1 4.2044 -2.7612 2.1615 38 1 2.6647 -3.2657 1.4229 39 1 3.7101 -5.2939 0.5283 40 1 4.0326 -5.2036 2.2778 41 1 5.1024 -5.9550 3.1986 42 1 7.5271 -7.3750 3.4828 43 1 7.6939 -5.8086 4.3116 44 1 7.8363 -7.7964 6.1262 45 1 8.6242 -9.3781 8.9578 46 1 5.8229 -4.5537 -1.0423 47 1 7.2752 -4.0652 -0.1340 48 1 5.9708 -2.1074 -1.0354 49 1 6.1173 -2.0904 0.7387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117478349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:27 Heat of formation + Delta-G solvation = -98.365847 kcal Electronic energy + Delta-G solvation = -29689.840917 eV Core-core repulsion = 25459.072852 eV Total energy + Delta-G solvation = -4230.768065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65090 -39.97528 -38.36027 -37.46328 -35.90585 -34.45250 -33.97082 -33.56623 -31.36710 -31.06903 -29.90267 -28.22154 -27.39200 -26.19413 -24.54584 -23.52727 -23.25194 -20.86994 -19.63326 -19.49654 -19.38028 -18.31035 -17.78270 -17.24319 -16.48361 -16.32633 -16.04143 -15.53207 -15.48888 -14.86610 -14.61769 -14.41494 -14.39613 -14.20533 -13.92716 -13.66294 -13.61511 -13.47879 -13.22356 -13.13021 -13.02222 -12.81088 -12.44304 -12.24299 -12.09020 -12.07843 -11.81750 -11.59857 -11.34951 -11.15198 -11.07594 -10.77932 -10.66132 -10.48181 -10.28119 -9.97378 -9.84242 -9.59222 -9.11539 -8.84975 -8.58095 -8.34429 -8.06213 -6.47846 -3.89793 2.29179 2.59312 2.81756 3.16324 3.23610 3.27782 3.44273 3.79405 4.05834 4.11471 4.20835 4.43880 4.50348 4.55569 4.74248 4.79038 4.92190 4.93229 4.98076 5.05722 5.10704 5.17230 5.20683 5.21495 5.25547 5.30332 5.40561 5.43858 5.61838 5.76114 5.77323 5.81931 5.87909 5.96155 5.98689 6.06460 6.09302 6.13769 6.24538 6.62095 6.83617 6.90790 7.14830 7.49142 7.82157 7.96060 8.24432 8.49319 8.86053 9.08170 9.43458 9.91655 10.69027 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.002052 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.005611 B =13641.490117 C =14980.879299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.628 5.628 3 C 0.079 3.921 4 C 0.512 3.488 5 O -0.531 6.531 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.133 4.133 9 C 0.112 3.888 10 N -0.631 5.631 11 C 0.708 3.292 12 O -0.599 6.599 13 N -0.726 5.726 14 C 0.127 3.873 15 C 0.429 3.571 16 O -0.598 6.598 17 N -0.550 5.550 18 C -0.304 4.304 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.132 3.868 27 C -0.130 4.130 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.406 0.594 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.396 0.604 45 H 0.274 0.726 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 21.008 -18.875 29.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.363 5.363 3 C -0.064 4.064 4 C 0.301 3.699 5 O -0.407 6.407 6 C -0.174 4.174 7 C -0.090 4.090 8 C -0.172 4.172 9 C -0.011 4.011 10 N -0.369 5.369 11 C 0.410 3.590 12 O -0.478 6.478 13 N -0.385 5.385 14 C -0.001 4.001 15 C 0.215 3.785 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.122 0.878 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C 0.009 3.991 27 C -0.168 4.168 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.247 0.753 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.230 0.770 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.084 20.348 -18.847 29.185 hybrid contribution -0.323 -0.159 0.880 0.951 sum -9.408 20.189 -17.967 28.617 Atomic orbital electron populations 1.21669 0.79228 1.03230 1.01770 1.47833 1.07172 1.06600 1.74663 1.21808 0.97379 0.85217 1.01985 1.20823 0.90571 0.83006 0.75545 1.90690 1.70442 1.30718 1.48864 1.21780 0.91431 0.99873 1.04295 1.20912 0.94986 0.93613 0.99479 1.22091 1.02880 0.95313 0.96886 1.21637 0.80281 0.97224 1.01982 1.47222 1.06601 1.56133 1.26959 1.15762 0.84669 0.78609 0.79989 1.90879 1.15112 1.65858 1.75987 1.44981 1.11870 1.62001 1.19696 1.20781 0.91604 0.98438 0.89271 1.19778 0.88347 0.85129 0.85246 1.90487 1.14200 1.63328 1.80438 1.41780 1.10010 1.49459 1.17200 1.19676 0.93767 1.33813 0.96132 0.87763 1.25321 0.95754 0.97318 0.99376 1.69606 1.06834 1.43140 1.33955 0.85871 0.78830 0.79165 0.80079 1.19799 1.20886 1.19813 1.21360 1.00723 0.90628 0.86398 1.22016 0.95004 0.97283 1.02537 0.92852 0.90390 0.91336 0.90425 0.91848 0.91937 0.88849 0.88794 0.90114 0.91898 0.88969 0.91267 0.89885 0.75344 0.89982 0.90165 0.77014 0.91577 0.91955 0.88793 0.90761 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.41 59.85 0.62 1.13 16 2 N -0.63 -4.24 3.27 -189.52 -0.62 -4.86 16 3 C 0.08 0.26 9.74 59.85 0.58 0.84 16 4 C 0.51 4.62 7.38 -10.99 -0.08 4.54 16 5 O -0.53 -6.74 13.54 5.56 0.08 -6.66 16 6 C -0.13 -0.89 3.99 -27.88 -0.11 -1.00 16 7 C -0.07 -0.61 1.80 -90.58 -0.16 -0.78 16 8 C -0.13 -1.43 5.11 -26.61 -0.14 -1.57 16 9 C 0.11 1.37 6.43 -3.71 -0.02 1.34 16 10 N -0.63 -8.71 2.97 -178.49 -0.53 -9.24 16 11 C 0.71 12.49 8.30 -86.92 -0.72 11.77 16 12 O -0.60 -12.24 15.79 5.28 0.08 -12.15 16 13 N -0.73 -13.23 5.44 -66.41 -0.36 -13.59 16 14 C 0.13 2.49 6.16 -5.20 -0.03 2.46 16 15 C 0.43 10.15 7.85 -10.99 -0.09 10.06 16 16 O -0.60 -15.68 15.24 5.55 0.08 -15.60 16 17 N -0.55 -13.92 5.29 -10.96 -0.06 -13.97 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 22 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 C 0.13 1.47 6.41 -3.71 -0.02 1.45 16 27 C -0.13 -1.08 5.36 -26.61 -0.14 -1.22 16 28 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.08 0.61 7.41 -51.93 -0.38 0.23 16 30 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 31 H 0.08 0.14 7.80 -51.93 -0.40 -0.27 16 32 H 0.06 0.18 7.84 -51.93 -0.41 -0.23 16 33 H 0.06 0.14 7.86 -51.93 -0.41 -0.27 16 34 H 0.09 0.43 7.88 -51.93 -0.41 0.02 16 35 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 36 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.10 5.93 -51.93 -0.31 0.79 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.10 5.56 -51.93 -0.29 0.81 16 41 H 0.41 7.32 4.89 -40.82 -0.20 7.12 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.40 9.64 7.90 -40.82 -0.32 9.32 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.17 7.04 -51.93 -0.37 0.81 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -34.83 394.04 -7.87 -42.70 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -7.62 Total: 14.06 kcal Atomic # 6 Polarization: 21.60 SS G_CDS: -0.56 Total: 21.05 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -0.85 Total: -65.12 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: 0.24 Total: -34.41 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.83 -7.87 -42.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117478349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.666 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds