Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99532 * 2 1 4 4 H 1.48505 * 109.46876 * 269.99671 * 3 2 1 5 5 H 1.48494 * 109.47561 * 29.99754 * 3 2 1 6 6 H 1.48500 * 109.47141 * 149.99964 * 3 2 1 7 7 C 1.38810 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00349 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99551 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00097 * 180.02562 * 9 7 2 11 11 C 1.53951 * 113.58247 * 154.99920 * 10 9 7 12 12 C 1.52905 * 86.77972 * 89.86992 * 11 10 9 13 13 C 1.52905 * 88.04705 * 24.89979 * 12 11 10 14 14 C 1.52913 * 121.13439 * 150.61596 * 12 11 10 15 15 C 1.53957 * 86.78103 * 100.82323 * 14 12 11 16 16 N 1.46497 * 113.57896 * 139.33644 * 15 14 12 17 17 C 1.34777 * 119.99525 * 156.41790 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 15 20 20 C 1.52995 * 109.54633 * 60.09993 * 19 17 16 21 21 F 1.39897 * 109.47664 * 180.02562 * 20 19 17 22 22 C 1.53182 * 109.54244 * 299.83186 * 19 17 16 23 23 C 1.53093 * 109.16355 * 297.11244 * 22 19 17 24 24 O 1.42903 * 109.41586 * 302.39215 * 23 22 19 25 25 C 1.42894 * 114.09847 * 61.15829 * 24 23 22 26 26 C 1.53095 * 109.41927 * 298.84123 * 25 24 23 27 27 C 1.53078 * 121.06935 * 259.15806 * 12 11 10 28 28 H 0.96992 * 120.00180 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99814 * 0.02562 * 9 7 2 30 30 H 1.08999 * 112.87427 * 23.85682 * 10 9 7 31 31 H 1.08997 * 113.66090 * 335.39665 * 11 10 9 32 32 H 1.08992 * 113.74444 * 204.35299 * 11 10 9 33 33 H 1.09005 * 113.66549 * 89.56921 * 13 12 11 34 34 H 1.08998 * 113.66578 * 220.62959 * 13 12 11 35 35 H 1.08996 * 113.66182 * 346.35137 * 14 12 11 36 36 H 1.09000 * 113.74744 * 215.30089 * 14 12 11 37 37 H 1.08999 * 113.57511 * 270.05061 * 15 14 12 38 38 H 0.97000 * 120.00580 * 336.42536 * 16 15 14 39 39 H 1.09003 * 109.47180 * 300.00302 * 20 19 17 40 40 H 1.09007 * 109.47055 * 59.99904 * 20 19 17 41 41 H 1.08998 * 109.52315 * 57.02561 * 22 19 17 42 42 H 1.09000 * 109.52034 * 177.20589 * 22 19 17 43 43 H 1.08997 * 109.47833 * 182.40480 * 23 22 19 44 44 H 1.08999 * 109.47698 * 62.37500 * 23 22 19 45 45 H 1.09000 * 109.48367 * 178.85518 * 25 24 23 46 46 H 1.09003 * 109.48057 * 58.82278 * 25 24 23 47 47 H 1.09000 * 109.52170 * 297.70791 * 26 25 24 48 48 H 1.08994 * 109.58066 * 177.54446 * 26 25 24 49 49 H 1.08996 * 113.66045 * 144.67739 * 27 12 11 50 50 H 1.08998 * 113.70731 * 13.57416 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.5279 -2.3645 -0.5947 12 6 6.0066 -2.0447 0.8219 13 6 4.7827 -2.7947 1.3486 14 6 7.4177 -2.4130 1.2815 15 6 7.7871 -0.9377 1.0421 16 7 8.6632 -0.3780 2.0742 17 6 9.4412 0.6861 1.7932 18 8 9.4157 1.1805 0.6860 19 6 10.3378 1.2657 2.8567 20 6 11.3300 0.2000 3.3263 21 9 12.1612 0.7394 4.3139 22 6 9.4891 1.7361 4.0420 23 6 8.5544 2.8562 3.5777 24 8 9.3290 3.9242 3.0286 25 6 10.1068 3.5545 1.8883 26 6 11.1039 2.4625 2.2847 27 6 6.2986 -0.6046 1.2508 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3619 0.0014 30 1 3.5289 -3.2968 -0.4055 31 1 5.6472 -1.5371 -1.2940 32 1 5.9121 -3.3073 -0.9839 33 1 4.9562 -3.8593 1.5061 34 1 4.3067 -2.3110 2.2015 35 1 7.9287 -3.1059 0.6131 36 1 7.4741 -2.7138 2.3277 37 1 8.1416 -0.7356 0.0314 38 1 8.6834 -0.7732 2.9599 39 1 10.7838 -0.6497 3.7360 40 1 11.9353 -0.1301 2.4820 41 1 8.8983 0.9021 4.4207 42 1 10.1412 2.1096 4.8315 43 1 7.9782 3.2240 4.4266 44 1 7.8755 2.4710 2.8169 45 1 10.6490 4.4255 1.5202 46 1 9.4482 3.1785 1.1054 47 1 11.7887 2.8507 3.0387 48 1 11.6688 2.1477 1.4072 49 1 6.0383 -0.3959 2.2885 50 1 5.9168 0.1451 0.5578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121773339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -80.444200 kcal Electronic energy + Delta-G solvation = -31327.043093 eV Core-core repulsion = 27077.132207 eV Total energy + Delta-G solvation = -4249.910886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.17445 -41.27219 -40.22055 -38.32428 -36.06967 -34.94208 -33.62213 -32.26798 -31.30396 -30.16093 -28.44545 -25.84821 -25.39695 -24.73928 -24.04271 -23.68305 -22.95831 -21.73924 -20.29890 -19.63125 -17.92015 -17.47788 -17.37534 -17.04979 -16.73290 -16.36644 -15.94690 -15.84190 -15.47253 -15.23475 -14.97445 -14.87664 -14.45668 -14.12374 -14.03692 -13.89541 -13.58166 -12.79919 -12.75470 -12.73633 -12.55077 -12.50900 -12.46106 -12.05175 -11.91410 -11.83413 -11.75773 -11.62191 -11.08739 -11.01870 -10.92241 -10.79143 -10.73440 -10.33211 -10.15205 -10.00152 -9.92342 -9.66886 -9.61782 -9.45637 -9.15456 -8.91691 -7.30541 -5.81087 -3.16735 2.19110 2.78948 3.34626 3.38200 3.43695 3.62977 3.81855 3.95400 4.02323 4.28771 4.45897 4.53602 4.55042 4.57100 4.61412 4.67733 4.70815 4.83002 4.90035 5.00788 5.15350 5.16581 5.17693 5.30680 5.34758 5.41160 5.42415 5.44206 5.47438 5.61597 5.63361 5.69036 5.70703 5.77570 5.84535 5.94291 6.05143 6.07911 6.11910 6.24265 6.34276 6.41012 6.61600 6.76570 6.87447 6.96257 7.17287 7.86760 7.97400 8.39093 9.17311 9.89765 10.09277 11.37096 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.003192 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.273306 B = 8769.699485 C =10106.893401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.729 5.729 10 C 0.175 3.825 11 C -0.137 4.137 12 C -0.095 4.095 13 C -0.156 4.156 14 C -0.130 4.130 15 C 0.121 3.879 16 N -0.715 5.715 17 C 0.524 3.476 18 O -0.525 6.525 19 C -0.114 4.114 20 C 0.078 3.922 21 F -0.206 7.206 22 C -0.144 4.144 23 C 0.058 3.942 24 O -0.381 6.381 25 C 0.049 3.951 26 C -0.129 4.129 27 C -0.123 4.123 28 H 0.260 0.740 29 H 0.363 0.637 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.398 0.602 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.585 -1.689 8.205 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.369 5.369 10 C 0.063 3.937 11 C -0.176 4.176 12 C -0.096 4.096 13 C -0.197 4.197 14 C -0.169 4.169 15 C 0.017 3.983 16 N -0.365 5.365 17 C 0.309 3.691 18 O -0.401 6.401 19 C -0.118 4.118 20 C 0.023 3.977 21 F -0.187 7.187 22 C -0.182 4.182 23 C -0.019 4.019 24 O -0.299 6.299 25 C -0.027 4.027 26 C -0.167 4.167 27 C -0.161 4.161 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.233 0.767 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 25.300 -1.173 7.468 26.405 hybrid contribution 0.635 0.727 0.517 1.095 sum 25.935 -0.446 7.984 27.140 Atomic orbital electron populations 1.69694 1.05074 1.25887 1.57304 1.24658 0.95218 0.97137 1.01909 0.86629 0.79253 0.85120 0.77974 1.20964 1.21625 1.20289 1.19114 0.80463 0.94798 1.43211 0.89028 1.42530 1.03872 1.01698 1.88819 1.21020 0.89947 0.89864 0.92858 1.23261 0.98776 1.01344 0.94252 1.22158 0.93162 0.95834 0.98399 1.23594 0.96002 0.98615 1.01519 1.23192 0.97065 0.94893 1.01706 1.22714 0.89025 0.93864 0.92746 1.46129 1.42883 1.31870 1.15634 1.20174 0.80315 0.80126 0.88524 1.90689 1.66956 1.59196 1.23219 1.21581 0.96359 0.97583 0.96263 1.21907 0.91182 0.94576 0.90036 1.92786 1.73671 1.88008 1.64212 1.22281 0.99107 1.00089 0.96701 1.22570 0.92602 0.87933 0.98752 1.87924 1.60801 1.34848 1.46374 1.22832 0.93542 0.97713 0.88606 1.22036 0.98505 0.94250 1.01929 1.23162 0.94204 0.96585 1.02164 0.92986 0.80402 0.91188 0.91507 0.89878 0.90866 0.91272 0.90872 0.89844 0.86818 0.76692 0.90176 0.89921 0.90185 0.89043 0.88209 0.92920 0.88815 0.90445 0.89880 0.89917 0.89715 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.17 27.74 -169.99 -4.71 17.46 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 7 C -0.25 -6.84 10.45 -15.06 -0.16 -7.00 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.73 -16.82 5.11 -52.47 -0.27 -17.09 16 10 C 0.17 3.20 4.56 -66.95 -0.30 2.90 16 11 C -0.14 -2.01 7.59 -26.28 -0.20 -2.21 16 12 C -0.09 -1.26 1.03 -154.63 -0.16 -1.42 16 13 C -0.16 -2.39 7.64 -26.28 -0.20 -2.59 16 14 C -0.13 -1.29 7.59 -26.28 -0.20 -1.49 16 15 C 0.12 1.34 4.21 -66.95 -0.28 1.05 16 16 N -0.71 -6.39 5.13 -52.85 -0.27 -6.66 16 17 C 0.52 5.48 5.15 -10.98 -0.06 5.43 16 18 O -0.52 -7.42 13.46 5.55 0.07 -7.35 16 19 C -0.11 -0.95 0.49 -155.47 -0.08 -1.03 16 20 C 0.08 0.51 6.28 37.15 0.23 0.74 16 21 F -0.21 -1.72 16.22 2.25 0.04 -1.69 16 22 C -0.14 -1.14 4.77 -26.59 -0.13 -1.27 16 23 C 0.06 0.60 6.62 37.21 0.25 0.85 16 24 O -0.38 -4.64 10.77 -35.23 -0.38 -5.02 16 25 C 0.05 0.54 6.55 37.21 0.24 0.79 16 26 C -0.13 -1.19 4.47 -26.59 -0.12 -1.31 16 27 C -0.12 -1.70 7.19 -26.20 -0.19 -1.89 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.36 8.31 4.62 -40.82 -0.19 8.12 16 30 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 37 H 0.11 1.45 7.50 -51.93 -0.39 1.06 16 38 H 0.40 2.49 7.54 -40.82 -0.31 2.18 16 39 H 0.08 0.35 7.57 -51.93 -0.39 -0.05 16 40 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 41 H 0.08 0.49 7.51 -51.93 -0.39 0.10 16 42 H 0.09 0.72 7.73 -51.93 -0.40 0.32 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.62 7.38 -51.93 -0.38 0.24 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.08 1.02 5.80 -51.93 -0.30 0.71 16 47 H 0.08 0.73 7.73 -51.93 -0.40 0.33 16 48 H 0.08 0.74 8.03 -51.93 -0.42 0.33 16 49 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.07 1.19 7.47 -51.93 -0.39 0.80 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -33.07 387.94 -8.54 -41.61 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.20 Total: 9.57 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.44 Total: -8.34 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.24 Total: -52.09 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.30 Total: -12.37 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.07 -8.54 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121773339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.831 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds