Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99532 * 2 1 4 4 H 1.48505 * 109.46876 * 269.99671 * 3 2 1 5 5 H 1.48494 * 109.47561 * 29.99754 * 3 2 1 6 6 H 1.48500 * 109.47141 * 149.99964 * 3 2 1 7 7 C 1.38810 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00349 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99551 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00097 * 180.02562 * 9 7 2 11 11 C 1.53951 * 113.58247 * 154.99920 * 10 9 7 12 12 C 1.52905 * 86.77972 * 89.86992 * 11 10 9 13 13 C 1.52905 * 88.04705 * 24.89979 * 12 11 10 14 14 C 1.52913 * 121.13439 * 150.61596 * 12 11 10 15 15 C 1.53957 * 86.78103 * 100.82323 * 14 12 11 16 16 N 1.46497 * 113.57896 * 139.33644 * 15 14 12 17 17 C 1.34777 * 119.99525 * 156.41790 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 15 20 20 C 1.52995 * 109.54633 * 60.09993 * 19 17 16 21 21 F 1.39897 * 109.47664 * 180.02562 * 20 19 17 22 22 C 1.53182 * 109.54244 * 299.83186 * 19 17 16 23 23 C 1.53093 * 109.16355 * 297.11244 * 22 19 17 24 24 O 1.42903 * 109.41586 * 302.39215 * 23 22 19 25 25 C 1.42894 * 114.09847 * 61.15829 * 24 23 22 26 26 C 1.53095 * 109.41927 * 298.84123 * 25 24 23 27 27 C 1.53078 * 121.06935 * 259.15806 * 12 11 10 28 28 H 0.96992 * 120.00180 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99814 * 0.02562 * 9 7 2 30 30 H 1.08999 * 112.87427 * 23.85682 * 10 9 7 31 31 H 1.08997 * 113.66090 * 335.39665 * 11 10 9 32 32 H 1.08992 * 113.74444 * 204.35299 * 11 10 9 33 33 H 1.09005 * 113.66549 * 89.56921 * 13 12 11 34 34 H 1.08998 * 113.66578 * 220.62959 * 13 12 11 35 35 H 1.08996 * 113.66182 * 346.35137 * 14 12 11 36 36 H 1.09000 * 113.74744 * 215.30089 * 14 12 11 37 37 H 1.08999 * 113.57511 * 270.05061 * 15 14 12 38 38 H 0.97000 * 120.00580 * 336.42536 * 16 15 14 39 39 H 1.09003 * 109.47180 * 300.00302 * 20 19 17 40 40 H 1.09007 * 109.47055 * 59.99904 * 20 19 17 41 41 H 1.08998 * 109.52315 * 57.02561 * 22 19 17 42 42 H 1.09000 * 109.52034 * 177.20589 * 22 19 17 43 43 H 1.08997 * 109.47833 * 182.40480 * 23 22 19 44 44 H 1.08999 * 109.47698 * 62.37500 * 23 22 19 45 45 H 1.09000 * 109.48367 * 178.85518 * 25 24 23 46 46 H 1.09003 * 109.48057 * 58.82278 * 25 24 23 47 47 H 1.09000 * 109.52170 * 297.70791 * 26 25 24 48 48 H 1.08994 * 109.58066 * 177.54446 * 26 25 24 49 49 H 1.08996 * 113.66045 * 144.67739 * 27 12 11 50 50 H 1.08998 * 113.70731 * 13.57416 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.5279 -2.3645 -0.5947 12 6 6.0066 -2.0447 0.8219 13 6 4.7827 -2.7947 1.3486 14 6 7.4177 -2.4130 1.2815 15 6 7.7871 -0.9377 1.0421 16 7 8.6632 -0.3780 2.0742 17 6 9.4412 0.6861 1.7932 18 8 9.4157 1.1805 0.6860 19 6 10.3378 1.2657 2.8567 20 6 11.3300 0.2000 3.3263 21 9 12.1612 0.7394 4.3139 22 6 9.4891 1.7361 4.0420 23 6 8.5544 2.8562 3.5777 24 8 9.3290 3.9242 3.0286 25 6 10.1068 3.5545 1.8883 26 6 11.1039 2.4625 2.2847 27 6 6.2986 -0.6046 1.2508 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3619 0.0014 30 1 3.5289 -3.2968 -0.4055 31 1 5.6472 -1.5371 -1.2940 32 1 5.9121 -3.3073 -0.9839 33 1 4.9562 -3.8593 1.5061 34 1 4.3067 -2.3110 2.2015 35 1 7.9287 -3.1059 0.6131 36 1 7.4741 -2.7138 2.3277 37 1 8.1416 -0.7356 0.0314 38 1 8.6834 -0.7732 2.9599 39 1 10.7838 -0.6497 3.7360 40 1 11.9353 -0.1301 2.4820 41 1 8.8983 0.9021 4.4207 42 1 10.1412 2.1096 4.8315 43 1 7.9782 3.2240 4.4266 44 1 7.8755 2.4710 2.8169 45 1 10.6490 4.4255 1.5202 46 1 9.4482 3.1785 1.1054 47 1 11.7887 2.8507 3.0387 48 1 11.6688 2.1477 1.4072 49 1 6.0383 -0.3959 2.2885 50 1 5.9168 0.1451 0.5578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121773339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = -103.095207 kcal Electronic energy + Delta-G solvation = -31328.025314 eV Core-core repulsion = 27077.132207 eV Total energy + Delta-G solvation = -4250.893107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.71464 -42.12860 -41.26052 -39.22551 -37.30744 -35.75093 -35.19437 -33.63218 -32.22922 -31.85645 -29.09771 -26.85773 -26.60634 -25.94755 -25.04175 -24.78363 -23.98524 -22.79116 -21.43108 -20.59529 -19.76913 -18.78712 -18.08749 -17.80927 -17.44270 -17.16640 -16.83895 -16.62514 -16.50211 -16.27812 -16.20434 -15.90108 -15.66306 -15.25385 -15.18606 -14.71115 -14.69844 -14.61179 -13.93717 -13.68540 -13.61728 -13.43386 -13.37201 -13.30992 -13.09079 -12.90509 -12.72154 -12.47738 -12.36332 -12.33560 -12.26241 -12.02017 -11.84825 -11.59484 -11.51986 -11.31505 -11.11450 -10.95442 -10.88131 -10.65543 -10.42892 -10.04715 -9.29574 -8.06777 -5.37980 1.30859 1.32685 1.39232 1.40393 2.02317 2.41777 2.84349 3.18618 3.23885 3.33202 3.37182 3.43266 3.50867 3.65675 3.69331 3.76454 3.87802 3.90702 4.00117 4.07612 4.13547 4.23500 4.29653 4.33652 4.41828 4.47077 4.52210 4.65843 4.70202 4.74058 4.75732 4.78224 4.84050 4.92864 4.94448 4.96479 4.96910 5.03061 5.07190 5.11014 5.17501 5.32804 5.44068 5.56051 5.62666 5.79580 6.13406 6.20392 6.45205 7.05352 7.12880 7.84771 8.01296 9.15059 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.003192 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.273306 B = 8769.699485 C =10106.893401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.943 3.057 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.258 1.258 7 C -0.226 4.226 8 H 0.062 0.938 9 N -0.736 5.736 10 C 0.142 3.858 11 C -0.124 4.124 12 C -0.092 4.092 13 C -0.142 4.142 14 C -0.104 4.104 15 C 0.131 3.869 16 N -0.700 5.700 17 C 0.524 3.476 18 O -0.566 6.566 19 C -0.110 4.110 20 C 0.079 3.921 21 F -0.215 7.215 22 C -0.138 4.138 23 C 0.051 3.949 24 O -0.400 6.400 25 C 0.047 3.953 26 C -0.127 4.127 27 C -0.135 4.135 28 H 0.258 0.742 29 H 0.364 0.636 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.416 0.584 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.031 0.969 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.087 -3.259 9.872 30.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.251 4.251 3 Si 0.772 3.228 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.357 4.357 8 H 0.080 0.920 9 N -0.377 5.377 10 C 0.033 3.967 11 C -0.162 4.162 12 C -0.092 4.092 13 C -0.182 4.182 14 C -0.141 4.141 15 C 0.026 3.974 16 N -0.352 5.352 17 C 0.310 3.690 18 O -0.444 6.444 19 C -0.113 4.113 20 C 0.024 3.976 21 F -0.196 7.196 22 C -0.176 4.176 23 C -0.026 4.026 24 O -0.319 6.319 25 C -0.029 4.029 26 C -0.165 4.165 27 C -0.174 4.174 28 H 0.067 0.933 29 H 0.197 0.803 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.254 0.746 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.049 0.951 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 28.869 -2.803 9.171 30.420 hybrid contribution -0.511 1.144 -0.045 1.254 sum 28.358 -1.658 9.126 29.836 Atomic orbital electron populations 1.69854 1.06858 1.26515 1.60044 1.25364 0.95978 1.00641 1.03144 0.85589 0.78600 0.80662 0.77976 1.20866 1.22042 1.18290 1.19117 0.82637 0.93489 1.40484 0.91993 1.42524 1.02245 1.03707 1.89248 1.21453 0.91515 0.87557 0.96155 1.23179 0.95620 1.02510 0.94939 1.22056 0.94821 0.95471 0.96898 1.23427 0.95965 1.00542 0.98271 1.23094 0.93432 0.93940 1.03673 1.22422 0.87395 0.94986 0.92636 1.45945 1.41815 1.31336 1.16073 1.20526 0.80285 0.79837 0.88323 1.90687 1.68251 1.60369 1.25135 1.21549 0.96443 0.97770 0.95561 1.22038 0.90905 0.94293 0.90338 1.92772 1.73989 1.88252 1.64622 1.22275 0.98864 0.99956 0.96457 1.22711 0.92919 0.88535 0.98396 1.87891 1.61205 1.36159 1.46630 1.22836 0.93501 0.98783 0.87800 1.21997 0.98113 0.94144 1.02207 1.23256 0.96676 0.96105 1.01375 0.93343 0.80292 0.92352 0.92914 0.86629 0.87835 0.93430 0.88769 0.87138 0.88453 0.74631 0.87162 0.89030 0.87686 0.88402 0.87059 0.95100 0.87983 0.93004 0.89178 0.89876 0.89536 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.54 13.97 21.65 0.30 -63.24 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.94 47.06 27.74 68.60 1.90 48.97 16 4 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.26 -11.86 6.52 99.48 0.65 -11.21 16 7 C -0.23 -12.94 10.45 84.03 0.88 -12.06 16 8 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 9 N -0.74 -34.27 5.11 -319.93 -1.63 -35.91 16 10 C 0.14 5.11 4.56 45.63 0.21 5.32 16 11 C -0.12 -3.35 7.59 30.88 0.23 -3.12 16 12 C -0.09 -2.18 1.03 -52.26 -0.05 -2.23 16 13 C -0.14 -3.99 7.64 30.88 0.24 -3.76 16 14 C -0.10 -1.53 7.59 30.89 0.23 -1.29 16 15 C 0.13 2.53 4.21 45.63 0.19 2.72 16 16 N -0.70 -10.23 5.13 -439.51 -2.26 -12.49 16 17 C 0.52 9.94 5.15 87.66 0.45 10.39 16 18 O -0.57 -15.76 13.46 -3.04 -0.04 -15.80 16 19 C -0.11 -1.56 0.49 -52.81 -0.03 -1.58 16 20 C 0.08 0.72 6.28 71.98 0.45 1.17 16 21 F -0.22 -2.87 16.22 44.97 0.73 -2.14 16 22 C -0.14 -1.81 4.77 30.69 0.15 -1.66 16 23 C 0.05 0.99 6.62 72.01 0.48 1.47 16 24 O -0.40 -9.63 10.77 -148.98 -1.60 -11.23 16 25 C 0.05 1.04 6.55 72.01 0.47 1.51 16 26 C -0.13 -2.17 4.47 30.69 0.14 -2.03 16 27 C -0.14 -3.54 7.19 30.94 0.22 -3.31 16 28 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.36 16.71 4.62 -92.70 -0.43 16.28 16 30 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.12 2.39 8.14 -2.39 -0.02 2.38 16 33 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.13 8.11 -2.39 -0.02 1.11 16 37 H 0.10 2.30 7.50 -2.39 -0.02 2.28 16 38 H 0.42 3.19 7.54 -92.71 -0.70 2.49 16 39 H 0.11 0.36 7.57 -2.39 -0.02 0.34 16 40 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.10 0.84 7.51 -2.39 -0.02 0.82 16 42 H 0.10 1.23 7.73 -2.39 -0.02 1.22 16 43 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.03 0.73 7.38 -2.39 -0.02 0.71 16 45 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.05 1.42 5.80 -2.39 -0.01 1.40 16 47 H 0.09 1.42 7.73 -2.39 -0.02 1.40 16 48 H 0.08 1.40 8.03 -2.39 -0.02 1.38 16 49 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.04 1.22 7.47 -2.39 -0.02 1.20 16 Total: -1.00 -76.48 387.94 1.90 -74.58 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.23 Total: 28.83 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.73 Total: -11.56 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -3.59 Total: -111.64 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.64 Total: -27.04 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.73 Total: -2.14 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.90 Total: 48.97 kcal Total: -76.48 1.90 -74.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121773339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.511 kcal (2) G-P(sol) polarization free energy of solvation -76.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds