Wall clock time and date at job start Sat Apr 11 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99524 * 2 1 4 4 C 1.53004 * 109.46910 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46936 * 184.39018 * 4 3 2 6 6 N 1.46497 * 109.46070 * 303.05603 * 5 4 3 7 7 C 1.34777 * 119.99726 * 303.02059 * 6 5 4 8 8 O 1.21279 * 120.00550 * 355.03442 * 7 6 5 9 9 C 1.50712 * 119.99621 * 175.02909 * 7 6 5 10 10 H 1.08993 * 110.48911 * 317.30371 * 9 7 6 11 11 C 1.54100 * 110.54450 * 80.00479 * 9 7 6 12 12 N 1.47055 * 103.98877 * 118.66947 * 11 9 7 13 13 C 1.34255 * 109.00838 * 0.11556 * 12 11 9 14 14 O 1.21582 * 123.00214 * 179.97438 * 13 12 11 15 15 N 1.33957 * 113.95737 * 359.86900 * 13 12 11 16 16 C 1.53040 * 109.45048 * 63.02677 * 5 4 3 17 17 C 1.53195 * 109.31153 * 181.38017 * 16 5 4 18 18 N 1.46931 * 108.77170 * 305.35826 * 17 16 5 19 19 C 1.36933 * 120.62799 * 233.62969 * 18 17 16 20 20 H 1.08003 * 120.00165 * 31.76767 * 19 18 17 21 21 C 1.38820 * 119.99801 * 211.76014 * 19 18 17 22 22 N 1.31616 * 120.00217 * 10.85473 * 21 19 18 23 23 Si 1.86806 * 119.99843 * 190.84855 * 21 19 18 24 24 H 1.48499 * 109.46981 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46857 * 120.00450 * 23 21 19 26 26 H 1.48498 * 109.47134 * 240.00446 * 23 21 19 27 27 C 1.46927 * 118.73722 * 53.61527 * 18 17 16 28 28 C 1.53045 * 109.45717 * 183.08575 * 5 4 3 29 29 H 1.09002 * 109.46745 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47348 * 300.00163 * 1 2 3 31 31 H 1.09000 * 109.47207 * 60.00416 * 1 2 3 32 32 H 1.08996 * 109.47694 * 60.00013 * 3 2 1 33 33 H 1.08999 * 109.47353 * 299.99632 * 3 2 1 34 34 H 1.08994 * 109.47208 * 64.38474 * 4 3 2 35 35 H 1.09004 * 109.46654 * 304.38865 * 4 3 2 36 36 H 0.97003 * 120.00095 * 123.02757 * 6 5 4 37 37 H 1.09008 * 110.54761 * 237.32948 * 11 9 7 38 38 H 1.08990 * 110.55548 * 359.97438 * 11 9 7 39 39 H 0.96998 * 125.41096 * 180.02562 * 12 11 9 40 40 H 0.97002 * 125.40632 * 180.08109 * 15 13 12 41 41 H 1.08999 * 109.49389 * 301.32513 * 16 5 4 42 42 H 1.08993 * 109.50089 * 61.42371 * 16 5 4 43 43 H 1.09001 * 109.58311 * 185.57601 * 17 16 5 44 44 H 1.09000 * 109.59083 * 65.14508 * 17 16 5 45 45 H 0.96993 * 120.00028 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.58350 * 186.60288 * 27 18 17 47 47 H 1.08999 * 109.70417 * 66.24562 * 27 18 17 48 48 H 1.09004 * 109.49564 * 298.57594 * 28 5 4 49 49 H 1.08994 * 109.50166 * 58.64590 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1573 2.5783 0.1098 6 7 3.6739 3.4170 -0.9897 7 6 3.8556 3.0251 -2.2664 8 8 4.4973 2.0248 -2.5083 9 6 3.2611 3.8299 -3.3935 10 1 2.2448 4.1376 -3.1479 11 6 4.1386 5.0584 -3.7022 12 7 4.5607 4.8527 -5.0957 13 6 4.0300 3.7056 -5.5486 14 8 4.2163 3.2892 -6.6756 15 7 3.2789 3.0603 -4.6464 16 6 3.7592 3.2096 1.4458 17 6 4.3550 4.6179 1.5382 18 7 5.8054 4.5330 1.3194 19 6 6.6803 5.0672 2.2272 20 1 6.4253 5.0859 3.2766 21 6 7.8953 5.5845 1.7989 22 7 8.1198 5.7590 0.5138 23 14 9.2113 6.0330 3.0464 24 1 8.7149 5.7430 4.4156 25 1 10.4349 5.2335 2.7842 26 1 9.5305 7.4787 2.9311 27 6 6.2991 3.8638 0.1081 28 6 5.6815 2.4639 0.0317 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8622 0.7134 -0.9275 35 1 3.8521 0.5773 0.8472 36 1 3.2231 4.2545 -0.7989 37 1 3.5579 5.9763 -3.6100 38 1 5.0039 5.0867 -3.0401 39 1 5.1297 5.4509 -5.6048 40 1 2.8197 2.2191 -4.7959 41 1 2.6728 3.2692 1.5106 42 1 4.1399 2.5990 2.2645 43 1 4.1583 5.0337 2.5264 44 1 3.9071 5.2550 0.7756 45 1 8.9686 6.1208 0.2146 46 1 7.3851 3.7821 0.1527 47 1 6.0117 4.4385 -0.7723 48 1 6.0441 1.8604 0.8638 49 1 5.9633 1.9924 -0.9097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151281778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:40 Heat of formation + Delta-G solvation = -68.678242 kcal Electronic energy + Delta-G solvation = -32203.114440 eV Core-core repulsion = 27973.633725 eV Total energy + Delta-G solvation = -4229.480714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39164 -40.06528 -37.96924 -37.40487 -36.14079 -34.65285 -33.04483 -32.34399 -31.55722 -30.24132 -29.28736 -28.67693 -26.61388 -24.97743 -24.07704 -23.22904 -22.19750 -21.81664 -21.07592 -20.33425 -18.85202 -18.06101 -17.62702 -16.95465 -16.50576 -16.31023 -16.04681 -15.58246 -15.24350 -14.99145 -14.94316 -14.71644 -14.18307 -14.00967 -13.92299 -13.82248 -13.51560 -13.30159 -13.12527 -13.01675 -12.82484 -12.45254 -12.22698 -11.74304 -11.59624 -11.51322 -11.15151 -11.11173 -10.93568 -10.80203 -10.46988 -10.34901 -10.34329 -10.10701 -10.03701 -9.84435 -9.57136 -9.53688 -9.33050 -8.82253 -8.75733 -8.54223 -6.69279 -5.85640 -3.34284 2.50713 2.72408 3.02310 3.30595 3.32088 3.40542 3.41534 3.70548 3.94300 4.18043 4.42297 4.56674 4.67132 4.96562 5.05723 5.15826 5.19005 5.21075 5.26048 5.27253 5.37210 5.39326 5.41447 5.47954 5.53339 5.57649 5.68716 5.90828 6.03598 6.08065 6.25302 6.30536 6.40954 6.56526 6.59309 6.69689 6.79271 6.90525 6.93648 7.07831 7.11268 7.28440 7.32900 7.63076 7.68132 7.73677 8.31786 8.40627 8.57003 9.15320 9.76319 10.33605 11.21915 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008791 B = 0.004479 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.408233 B = 6249.582520 C = 8819.844544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.067 3.933 4 C -0.130 4.130 5 C 0.195 3.805 6 N -0.707 5.707 7 C 0.504 3.496 8 O -0.515 6.515 9 C 0.103 3.897 10 H 0.111 0.889 11 C 0.101 3.899 12 N -0.737 5.737 13 C 0.707 3.293 14 O -0.589 6.589 15 N -0.713 5.713 16 C -0.141 4.141 17 C 0.146 3.854 18 N -0.590 5.590 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.008 3.992 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.181 3.819 28 C -0.151 4.151 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.433 0.567 40 H 0.432 0.568 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.014 0.986 45 H 0.253 0.747 46 H 0.084 0.916 47 H 0.016 0.984 48 H 0.061 0.939 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.930 -2.619 -2.987 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.168 4.168 5 C 0.110 3.890 6 N -0.360 5.360 7 C 0.286 3.714 8 O -0.390 6.390 9 C -0.008 4.008 10 H 0.129 0.871 11 C -0.025 4.025 12 N -0.400 5.400 13 C 0.406 3.594 14 O -0.467 6.467 15 N -0.375 5.375 16 C -0.181 4.181 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.385 4.385 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.055 3.945 28 C -0.191 4.191 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.234 0.766 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.275 0.725 40 H 0.274 0.726 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.034 0.966 48 H 0.079 0.921 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.103 -3.652 -3.784 15.993 hybrid contribution 0.313 0.883 0.677 1.156 sum -14.791 -2.769 -3.107 15.365 Atomic orbital electron populations 1.22695 0.81576 1.02437 0.99703 1.87896 1.19237 1.28675 1.95363 1.22592 0.94642 0.84054 0.99677 1.21980 0.92390 0.97728 1.04744 1.20231 0.95272 0.87989 0.85502 1.46102 1.59898 1.24915 1.05070 1.20537 0.80978 0.86074 0.83771 1.90701 1.38423 1.26160 1.83695 1.21875 1.01205 0.91646 0.86095 0.87098 1.22308 0.99400 0.96323 0.84435 1.45099 1.55410 1.25121 1.14419 1.15919 0.78498 0.80866 0.84147 1.90982 1.66199 1.70681 1.18874 1.44763 1.54785 1.26764 1.11208 1.22430 0.99289 1.00610 0.95735 1.20873 0.86516 0.91914 0.98743 1.44019 0.99072 1.64461 1.23709 1.19187 0.97906 1.32919 0.88519 0.91861 1.25145 0.99841 0.98314 0.95839 1.69966 1.23995 1.47798 1.12842 0.86232 0.81913 0.77780 0.80874 1.20246 1.21568 1.21663 1.20665 0.99481 0.86719 0.87597 1.22608 0.92465 1.02078 1.01934 0.89921 0.94234 0.94403 0.93176 0.93989 0.89279 0.90538 0.76563 0.88809 0.88552 0.72544 0.72558 0.92437 0.90456 0.92520 0.96807 0.93655 0.89736 0.96588 0.92051 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.07 10.70 -35.23 -0.38 -5.44 16 3 C 0.07 0.79 5.50 37.16 0.20 0.99 16 4 C -0.13 -1.82 4.32 -26.73 -0.12 -1.93 16 5 C 0.20 2.82 0.35 -131.78 -0.05 2.77 16 6 N -0.71 -8.63 3.36 -47.57 -0.16 -8.79 16 7 C 0.50 6.56 6.12 -10.98 -0.07 6.49 16 8 O -0.52 -8.78 12.84 5.56 0.07 -8.71 16 9 C 0.10 1.01 4.17 -68.20 -0.28 0.73 16 10 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 11 C 0.10 0.98 7.69 -3.16 -0.02 0.96 16 12 N -0.74 -8.53 6.40 -64.62 -0.41 -8.94 16 13 C 0.71 10.30 8.92 -88.12 -0.79 9.52 16 14 O -0.59 -10.98 18.05 5.29 0.10 -10.89 16 15 N -0.71 -8.53 5.61 -59.25 -0.33 -8.86 16 16 C -0.14 -1.98 4.72 -26.61 -0.13 -2.11 16 17 C 0.15 2.53 6.24 -3.71 -0.02 2.51 16 18 N -0.59 -13.16 2.98 -172.31 -0.51 -13.67 16 19 C -0.26 -6.52 9.58 -15.06 -0.14 -6.66 16 20 H 0.06 1.60 7.85 -52.48 -0.41 1.19 16 21 C 0.01 0.20 5.04 -17.43 -0.09 0.11 16 22 N -0.90 -24.77 11.09 55.49 0.62 -24.15 16 23 Si 0.90 20.85 29.57 -169.99 -5.03 15.83 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.18 3.98 4.99 -3.71 -0.02 3.96 16 28 C -0.15 -2.78 4.71 -26.61 -0.13 -2.91 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.54 6.27 -51.93 -0.33 0.22 16 33 H 0.04 0.46 7.46 -51.93 -0.39 0.08 16 34 H 0.09 1.45 6.22 -51.93 -0.32 1.13 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 4.03 7.18 -40.82 -0.29 3.73 16 37 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.10 1.14 7.72 -51.93 -0.40 0.74 16 39 H 0.43 4.31 8.96 -40.82 -0.37 3.95 16 40 H 0.43 4.79 8.96 -40.82 -0.37 4.42 16 41 H 0.06 0.65 6.35 -51.93 -0.33 0.32 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 44 H 0.01 0.23 6.88 -51.93 -0.36 -0.13 16 45 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 46 H 0.08 2.21 6.14 -51.93 -0.32 1.89 16 47 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.07 1.41 6.26 -51.93 -0.33 1.08 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -34.08 380.67 -8.37 -42.45 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.54 Total: 9.60 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -0.53 Total: 15.84 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.80 Total: -64.41 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.21 Total: -25.04 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.08 -8.37 -42.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151281778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.224 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds