Wall clock time and date at job start Sat Apr 11 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99524 * 2 1 4 4 C 1.53004 * 109.46910 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46936 * 184.39018 * 4 3 2 6 6 N 1.46497 * 109.46070 * 303.05603 * 5 4 3 7 7 C 1.34777 * 119.99726 * 303.02059 * 6 5 4 8 8 O 1.21279 * 120.00550 * 355.03442 * 7 6 5 9 9 C 1.50712 * 119.99621 * 175.02909 * 7 6 5 10 10 H 1.08993 * 110.48911 * 317.30371 * 9 7 6 11 11 C 1.54100 * 110.54450 * 80.00479 * 9 7 6 12 12 N 1.47055 * 103.98877 * 118.66947 * 11 9 7 13 13 C 1.34255 * 109.00838 * 0.11556 * 12 11 9 14 14 O 1.21582 * 123.00214 * 179.97438 * 13 12 11 15 15 N 1.33957 * 113.95737 * 359.86900 * 13 12 11 16 16 C 1.53040 * 109.45048 * 63.02677 * 5 4 3 17 17 C 1.53195 * 109.31153 * 181.38017 * 16 5 4 18 18 N 1.46931 * 108.77170 * 305.35826 * 17 16 5 19 19 C 1.36933 * 120.62799 * 233.62969 * 18 17 16 20 20 H 1.08003 * 120.00165 * 31.76767 * 19 18 17 21 21 C 1.38820 * 119.99801 * 211.76014 * 19 18 17 22 22 N 1.31616 * 120.00217 * 10.85473 * 21 19 18 23 23 Si 1.86806 * 119.99843 * 190.84855 * 21 19 18 24 24 H 1.48499 * 109.46981 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46857 * 120.00450 * 23 21 19 26 26 H 1.48498 * 109.47134 * 240.00446 * 23 21 19 27 27 C 1.46927 * 118.73722 * 53.61527 * 18 17 16 28 28 C 1.53045 * 109.45717 * 183.08575 * 5 4 3 29 29 H 1.09002 * 109.46745 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47348 * 300.00163 * 1 2 3 31 31 H 1.09000 * 109.47207 * 60.00416 * 1 2 3 32 32 H 1.08996 * 109.47694 * 60.00013 * 3 2 1 33 33 H 1.08999 * 109.47353 * 299.99632 * 3 2 1 34 34 H 1.08994 * 109.47208 * 64.38474 * 4 3 2 35 35 H 1.09004 * 109.46654 * 304.38865 * 4 3 2 36 36 H 0.97003 * 120.00095 * 123.02757 * 6 5 4 37 37 H 1.09008 * 110.54761 * 237.32948 * 11 9 7 38 38 H 1.08990 * 110.55548 * 359.97438 * 11 9 7 39 39 H 0.96998 * 125.41096 * 180.02562 * 12 11 9 40 40 H 0.97002 * 125.40632 * 180.08109 * 15 13 12 41 41 H 1.08999 * 109.49389 * 301.32513 * 16 5 4 42 42 H 1.08993 * 109.50089 * 61.42371 * 16 5 4 43 43 H 1.09001 * 109.58311 * 185.57601 * 17 16 5 44 44 H 1.09000 * 109.59083 * 65.14508 * 17 16 5 45 45 H 0.96993 * 120.00028 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.58350 * 186.60288 * 27 18 17 47 47 H 1.08999 * 109.70417 * 66.24562 * 27 18 17 48 48 H 1.09004 * 109.49564 * 298.57594 * 28 5 4 49 49 H 1.08994 * 109.50166 * 58.64590 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1573 2.5783 0.1098 6 7 3.6739 3.4170 -0.9897 7 6 3.8556 3.0251 -2.2664 8 8 4.4973 2.0248 -2.5083 9 6 3.2611 3.8299 -3.3935 10 1 2.2448 4.1376 -3.1479 11 6 4.1386 5.0584 -3.7022 12 7 4.5607 4.8527 -5.0957 13 6 4.0300 3.7056 -5.5486 14 8 4.2163 3.2892 -6.6756 15 7 3.2789 3.0603 -4.6464 16 6 3.7592 3.2096 1.4458 17 6 4.3550 4.6179 1.5382 18 7 5.8054 4.5330 1.3194 19 6 6.6803 5.0672 2.2272 20 1 6.4253 5.0859 3.2766 21 6 7.8953 5.5845 1.7989 22 7 8.1198 5.7590 0.5138 23 14 9.2113 6.0330 3.0464 24 1 8.7149 5.7430 4.4156 25 1 10.4349 5.2335 2.7842 26 1 9.5305 7.4787 2.9311 27 6 6.2991 3.8638 0.1081 28 6 5.6815 2.4639 0.0317 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8622 0.7134 -0.9275 35 1 3.8521 0.5773 0.8472 36 1 3.2231 4.2545 -0.7989 37 1 3.5579 5.9763 -3.6100 38 1 5.0039 5.0867 -3.0401 39 1 5.1297 5.4509 -5.6048 40 1 2.8197 2.2191 -4.7959 41 1 2.6728 3.2692 1.5106 42 1 4.1399 2.5990 2.2645 43 1 4.1583 5.0337 2.5264 44 1 3.9071 5.2550 0.7756 45 1 8.9686 6.1208 0.2146 46 1 7.3851 3.7821 0.1527 47 1 6.0117 4.4385 -0.7723 48 1 6.0441 1.8604 0.8638 49 1 5.9633 1.9924 -0.9097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151281778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:39 Heat of formation + Delta-G solvation = -97.142911 kcal Electronic energy + Delta-G solvation = -32204.348760 eV Core-core repulsion = 27973.633725 eV Total energy + Delta-G solvation = -4230.715035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41580 -41.23204 -39.03685 -38.55113 -37.31751 -36.17252 -33.99503 -33.70193 -33.02350 -31.74479 -30.48041 -29.84930 -27.59792 -26.37941 -25.07132 -24.58004 -23.62467 -22.82581 -22.22319 -21.67120 -20.15185 -19.19001 -18.67243 -18.53222 -17.46117 -17.31617 -16.93102 -16.79823 -16.62935 -16.36264 -15.98730 -15.76013 -15.56102 -15.25139 -15.13840 -15.00239 -14.86955 -14.76790 -14.34676 -13.94757 -13.92992 -13.73811 -13.23991 -13.11669 -12.98378 -12.74510 -12.68555 -12.58953 -12.21208 -12.15809 -12.03319 -11.89130 -11.75929 -11.57755 -11.40733 -11.24337 -10.88326 -10.54214 -10.51192 -10.41828 -9.94409 -9.76512 -8.54200 -7.82378 -5.31653 1.46094 1.50084 1.51235 1.57880 1.71245 2.01112 2.26284 2.53119 2.86095 3.06232 3.34157 3.34684 3.57203 3.76835 3.88154 3.99966 4.03712 4.16080 4.23080 4.37166 4.41758 4.49534 4.58421 4.59230 4.61763 4.64337 4.70343 4.76741 4.82185 4.88657 4.94450 5.03972 5.11933 5.17731 5.23668 5.31165 5.42927 5.56590 5.67229 5.70751 5.82946 5.91124 6.21083 6.27984 6.31778 6.46292 6.67682 7.21809 7.31943 7.51920 7.93306 8.43878 9.22140 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008791 B = 0.004479 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.408233 B = 6249.582520 C = 8819.844544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.073 3.927 4 C -0.122 4.122 5 C 0.206 3.794 6 N -0.696 5.696 7 C 0.501 3.499 8 O -0.560 6.560 9 C 0.110 3.890 10 H 0.166 0.834 11 C 0.101 3.899 12 N -0.732 5.732 13 C 0.697 3.303 14 O -0.639 6.639 15 N -0.708 5.708 16 C -0.127 4.127 17 C 0.141 3.859 18 N -0.606 5.606 19 C -0.256 4.256 20 H 0.066 0.934 21 C -0.045 4.045 22 N -0.931 5.931 23 Si 0.957 3.043 24 H -0.266 1.266 25 H -0.299 1.299 26 H -0.292 1.292 27 C 0.197 3.803 28 C -0.140 4.140 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.415 0.585 37 H 0.140 0.860 38 H 0.073 0.927 39 H 0.438 0.562 40 H 0.435 0.565 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.246 0.754 46 H 0.035 0.965 47 H 0.006 0.994 48 H 0.047 0.953 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.383 -1.633 -1.733 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.003 4.003 4 C -0.160 4.160 5 C 0.120 3.880 6 N -0.350 5.350 7 C 0.286 3.714 8 O -0.438 6.438 9 C 0.000 4.000 10 H 0.184 0.816 11 C -0.024 4.024 12 N -0.394 5.394 13 C 0.395 3.605 14 O -0.521 6.521 15 N -0.369 5.369 16 C -0.167 4.167 17 C 0.016 3.984 18 N -0.330 5.330 19 C -0.387 4.387 20 H 0.083 0.917 21 C -0.241 4.241 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.190 1.190 25 H -0.227 1.227 26 H -0.219 1.219 27 C 0.071 3.929 28 C -0.180 4.180 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.253 0.747 37 H 0.158 0.842 38 H 0.091 0.909 39 H 0.281 0.719 40 H 0.278 0.722 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.025 0.975 48 H 0.066 0.934 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.619 -2.631 -2.466 18.965 hybrid contribution 1.382 0.525 0.335 1.516 sum -17.238 -2.106 -2.131 17.496 Atomic orbital electron populations 1.22905 0.79507 1.03580 1.00982 1.87853 1.21537 1.29224 1.95616 1.22511 0.92462 0.84190 1.01129 1.21793 0.94634 0.96593 1.03018 1.19933 0.92137 0.89183 0.86789 1.45933 1.59462 1.25187 1.04380 1.21151 0.80106 0.85633 0.84532 1.90705 1.40329 1.28380 1.84338 1.22144 1.03676 0.90433 0.83720 0.81640 1.22519 0.99151 0.98134 0.82587 1.45129 1.54845 1.24266 1.15180 1.16210 0.78802 0.81552 0.83902 1.90937 1.68005 1.72024 1.21136 1.44767 1.53845 1.26889 1.11407 1.22305 1.01685 0.97987 0.94684 1.21108 0.83417 0.94269 0.99579 1.44202 1.01217 1.64519 1.23027 1.19495 0.98559 1.31381 0.89267 0.91677 1.25771 1.01807 0.99368 0.97113 1.70112 1.23913 1.49375 1.14299 0.85362 0.79401 0.76958 0.79663 1.19009 1.22675 1.21872 1.20284 0.96769 0.88422 0.87430 1.22389 0.95978 0.99250 1.00355 0.89057 0.92769 0.93193 0.91257 0.92712 0.91899 0.91357 0.74712 0.84242 0.90891 0.71909 0.72213 0.87975 0.91450 0.92308 0.94484 0.94501 0.94682 0.97547 0.93441 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.80 10.70 -148.98 -1.59 -11.39 16 3 C 0.07 1.48 5.50 71.98 0.40 1.88 16 4 C -0.12 -3.23 4.32 30.59 0.13 -3.10 16 5 C 0.21 5.59 0.35 3.63 0.00 5.59 16 6 N -0.70 -15.07 3.36 -422.80 -1.42 -16.49 16 7 C 0.50 12.15 6.12 87.66 0.54 12.69 16 8 O -0.56 -19.14 12.84 -3.03 -0.04 -19.18 16 9 C 0.11 1.82 4.17 44.52 0.19 2.01 16 10 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 11 C 0.10 1.70 7.69 86.65 0.67 2.36 16 12 N -0.73 -16.08 6.40 -476.91 -3.05 -19.13 16 13 C 0.70 19.93 8.92 179.47 1.60 21.53 16 14 O -0.64 -24.24 18.05 -3.97 -0.07 -24.31 16 15 N -0.71 -15.84 5.61 -460.09 -2.58 -18.42 16 16 C -0.13 -3.16 4.72 30.67 0.14 -3.01 16 17 C 0.14 4.48 6.24 86.36 0.54 5.02 16 18 N -0.61 -26.77 2.98 -699.06 -2.09 -28.86 16 19 C -0.26 -13.05 9.58 84.04 0.80 -12.25 16 20 H 0.07 3.24 7.85 -2.91 -0.02 3.21 16 21 C -0.04 -2.39 5.04 84.86 0.43 -1.96 16 22 N -0.93 -52.66 11.09 21.65 0.24 -52.42 16 23 Si 0.96 43.47 29.57 68.60 2.03 45.50 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 C 0.20 8.88 4.99 86.36 0.43 9.31 16 28 C -0.14 -5.27 4.71 30.67 0.14 -5.13 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.14 6.27 -2.39 -0.01 1.12 16 33 H 0.05 0.97 7.46 -2.39 -0.02 0.95 16 34 H 0.06 2.04 6.22 -2.39 -0.01 2.03 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 6.47 7.18 -92.71 -0.67 5.80 16 37 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.63 7.72 -2.39 -0.02 1.61 16 39 H 0.44 8.45 8.96 -92.71 -0.83 7.61 16 40 H 0.44 9.13 8.96 -92.71 -0.83 8.30 16 41 H 0.10 1.71 6.35 -2.39 -0.02 1.70 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.86 7.93 -2.39 -0.02 1.84 16 44 H 0.04 1.04 6.88 -2.39 -0.02 1.02 16 45 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 46 H 0.03 1.92 6.14 -2.39 -0.01 1.91 16 47 H 0.01 0.30 7.74 -2.39 -0.02 0.28 16 48 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.05 2.21 6.26 -2.39 -0.01 2.20 16 Total: -1.00 -79.34 380.67 -2.64 -81.98 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -1.32 Total: 26.14 kcal Atomic # 6 Polarization: 29.32 SS G_CDS: 7.26 Total: 36.58 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -8.90 Total: -135.32 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -1.71 Total: -54.88 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -79.34 -2.64 -81.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151281778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.164 kcal (2) G-P(sol) polarization free energy of solvation -79.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds