Wall clock time and date at job start Sat Apr 11 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48498 * 109.47418 * 240.00227 * 3 2 1 5 5 H 1.48500 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47090 * 120.00508 * 3 2 1 7 7 C 1.38796 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00468 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00011 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46806 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00032 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99804 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00127 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47409 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47429 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.47295 * 179.97438 * 16 15 14 18 18 C 1.46892 * 110.99830 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46956 * 180.02562 * 18 17 16 20 20 C 1.52947 * 109.41008 * 184.99886 * 19 18 17 21 21 C 1.53184 * 109.44835 * 176.90834 * 20 19 18 22 22 C 1.53146 * 108.88301 * 56.56851 * 21 20 19 23 23 C 1.52846 * 117.67745 * 91.48946 * 22 21 20 24 24 C 1.52805 * 117.74988 * 160.37048 * 22 21 20 25 25 C 1.53153 * 115.00626 * 306.05849 * 22 21 20 26 26 C 1.52934 * 109.41198 * 64.64041 * 19 18 17 27 27 H 0.96995 * 119.99864 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47268 * 59.99919 * 10 9 7 29 29 H 1.08995 * 109.47414 * 299.99648 * 10 9 7 30 30 H 0.97000 * 119.99593 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47008 * 59.99414 * 14 13 11 32 32 H 1.09004 * 109.46618 * 299.99880 * 14 13 11 33 33 H 1.08996 * 109.47362 * 59.99742 * 15 14 13 34 34 H 1.09006 * 109.46600 * 299.99862 * 15 14 13 35 35 H 1.09001 * 109.47077 * 59.99016 * 16 15 14 36 36 H 1.09004 * 109.46529 * 299.99495 * 16 15 14 37 37 H 1.00894 * 110.99629 * 303.95372 * 17 16 15 38 38 H 1.08997 * 109.47568 * 60.00072 * 18 17 16 39 39 H 1.09005 * 109.47212 * 299.99589 * 18 17 16 40 40 H 1.08999 * 109.35344 * 304.81441 * 19 18 17 41 41 H 1.08998 * 109.47963 * 296.89702 * 20 19 18 42 42 H 1.09002 * 109.47582 * 56.92060 * 20 19 18 43 43 H 1.08995 * 109.57119 * 176.39071 * 21 20 19 44 44 H 1.09004 * 109.56622 * 296.74630 * 21 20 19 45 45 H 1.08990 * 117.50691 * 215.22036 * 23 22 21 46 46 H 1.09003 * 117.50162 * 0.28495 * 23 22 21 47 47 H 1.09002 * 117.50024 * 359.85790 * 24 22 21 48 48 H 1.09007 * 117.49910 * 144.88817 * 24 22 21 49 49 H 1.08998 * 109.57351 * 294.11915 * 25 22 21 50 50 H 1.09004 * 109.56945 * 173.75509 * 25 22 21 51 51 H 1.08996 * 109.47798 * 303.08293 * 26 19 18 52 52 H 1.09004 * 109.47480 * 63.09767 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1042 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7912 -5.5022 0.0000 13 7 2.8442 -6.3431 -0.0033 14 6 2.3306 -7.7151 -0.0034 15 6 3.5026 -8.6985 -0.0046 16 6 2.9661 -10.1314 -0.0055 17 7 4.0914 -11.0756 -0.0073 18 6 3.6132 -12.4645 -0.0075 19 6 4.8111 -13.4164 -0.0087 20 6 4.3149 -14.8576 -0.1346 21 6 5.5158 -15.8054 -0.2136 22 6 6.3970 -15.5928 1.0208 23 6 6.1248 -16.4650 2.2461 24 6 7.3750 -16.7050 1.3968 25 6 6.8362 -14.1455 1.2612 26 6 5.5943 -13.2494 1.2942 27 1 -0.4850 0.8400 0.0004 28 1 3.1252 -3.7317 0.8874 29 1 3.1238 -3.7310 -0.8925 30 1 3.8010 -6.1834 -0.0043 31 1 1.7208 -7.8746 -0.8928 32 1 1.7230 -7.8756 0.8872 33 1 4.1119 -8.5388 0.8849 34 1 4.1105 -8.5380 -0.8951 35 1 2.3570 -10.2908 -0.8952 36 1 2.3579 -10.2921 0.8848 37 1 4.7059 -10.9043 -0.7890 38 1 3.0080 -12.6404 -0.8968 39 1 3.0101 -12.6413 0.8832 40 1 5.4585 -13.1811 -0.8534 41 1 3.7089 -15.1108 0.7353 42 1 3.7134 -14.9573 -1.0382 43 1 5.1655 -16.8372 -0.2389 44 1 6.0912 -15.5912 -1.1143 45 1 6.2624 -16.0114 3.2275 46 1 5.3197 -17.1965 2.1745 47 1 7.3924 -17.5943 0.7667 48 1 8.3352 -16.4093 1.8197 49 1 7.4960 -13.8254 0.4548 50 1 7.3614 -14.0768 2.2139 51 1 5.8998 -12.2089 1.4039 52 1 4.9634 -13.5337 2.1364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154814070.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:46 Heat of formation + Delta-G solvation = -70.025210 kcal Electronic energy + Delta-G solvation = -25594.119194 eV Core-core repulsion = 21910.873285 eV Total energy + Delta-G solvation = -3683.245909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.61599 -40.41974 -38.10911 -36.57688 -35.13124 -34.57807 -32.58961 -31.77649 -30.67294 -28.94614 -27.66294 -25.72841 -24.05840 -23.55065 -23.16465 -22.58338 -21.69967 -21.22896 -19.80506 -19.52189 -17.77292 -17.33268 -17.13084 -16.87052 -16.59352 -16.21920 -16.11943 -15.85714 -15.65191 -15.38326 -15.24685 -14.68027 -14.44597 -14.38974 -14.24488 -13.97522 -13.61459 -13.45909 -13.16473 -13.11553 -13.08435 -12.85588 -12.72490 -12.60216 -12.52401 -12.40724 -12.28985 -11.90711 -11.82078 -11.79533 -11.71676 -11.42062 -11.12197 -10.96779 -10.92457 -10.75355 -10.38765 -10.27579 -10.11421 -9.32884 -8.66514 -8.33842 -6.12372 1.27639 1.44782 1.47677 1.57522 1.61575 2.26436 2.30268 2.89404 3.00329 3.19021 3.33793 3.71316 3.83219 3.86445 3.95203 4.01279 4.05545 4.10881 4.16793 4.23869 4.29732 4.32441 4.38475 4.49086 4.51875 4.55371 4.63344 4.67016 4.69022 4.75767 4.80214 4.80685 4.82451 4.99830 5.01927 5.05489 5.12034 5.18328 5.21783 5.23406 5.26546 5.27743 5.31634 5.42165 5.44313 5.46244 5.60455 5.63178 6.07262 6.20291 6.49418 6.53364 7.07304 7.25490 8.75266 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036937 B = 0.001214 C = 0.001189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.856888 B =23063.081277 C =23535.139318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.712 5.712 14 C 0.122 3.878 15 C -0.111 4.111 16 C 0.066 3.934 17 N -0.689 5.689 18 C 0.065 3.935 19 C -0.076 4.076 20 C -0.109 4.109 21 C -0.078 4.078 22 C -0.125 4.125 23 C -0.179 4.179 24 C -0.179 4.179 25 C -0.081 4.081 26 C -0.097 4.097 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.417 0.583 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.346 0.654 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.710 -34.783 0.053 39.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.366 5.366 14 C -0.003 4.003 15 C -0.149 4.149 16 C -0.064 4.064 17 N -0.320 5.320 18 C -0.064 4.064 19 C -0.094 4.094 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.216 4.216 24 C -0.216 4.216 25 C -0.118 4.118 26 C -0.135 4.135 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.115 0.885 48 H 0.112 0.888 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.656 -35.031 0.741 38.377 hybrid contribution 1.350 1.170 -0.761 1.942 sum 17.006 -33.861 -0.020 37.892 Atomic orbital electron populations 1.70178 1.08019 1.28687 1.47956 1.26124 0.95936 1.03310 0.93658 0.85007 0.77811 0.75668 0.79526 1.18604 1.20401 1.18640 1.23188 0.95384 0.91998 1.59025 0.89843 1.85585 1.10692 0.99305 1.97069 1.23377 1.03516 0.94311 1.06882 1.20102 0.86251 0.86805 0.75143 1.90687 1.17528 1.86172 1.50298 1.45740 1.10352 1.05159 1.75379 1.21316 0.97377 0.80092 1.01490 1.21589 0.96501 0.92544 1.04279 1.21754 0.92828 0.91035 1.00824 1.60398 1.18530 1.02682 1.50389 1.21992 0.96606 0.87545 1.00299 1.21041 0.95953 0.93889 0.98553 1.21505 0.97383 0.93917 1.01862 1.21108 0.95375 0.99219 0.95836 1.21568 1.01675 0.92595 0.96697 1.23036 0.99953 1.03146 0.95460 1.23044 0.94459 1.00281 1.03810 1.21152 0.97466 0.91897 1.01303 1.21382 0.95844 0.99538 0.96690 0.91984 0.87144 0.87093 0.74558 0.92615 0.92660 0.89809 0.89922 0.94950 0.91299 0.83528 0.95129 0.91724 0.91136 0.92270 0.91534 0.91642 0.91411 0.89154 0.88825 0.88537 0.88796 0.91584 0.92225 0.91251 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 10 C -0.13 -5.13 6.16 71.24 0.44 -4.70 16 11 C 0.53 19.71 7.85 87.66 0.69 20.39 16 12 O -0.57 -26.73 15.86 -3.01 -0.05 -26.77 16 13 N -0.71 -17.61 5.56 -463.06 -2.57 -20.19 16 14 C 0.12 2.60 5.67 86.38 0.49 3.09 16 15 C -0.11 -1.48 5.59 30.59 0.17 -1.31 16 16 C 0.07 0.86 5.69 86.30 0.49 1.35 16 17 N -0.69 -7.92 5.88 -513.89 -3.02 -10.94 16 18 C 0.06 0.72 5.07 86.31 0.44 1.15 16 19 C -0.08 -0.73 2.24 -10.83 -0.02 -0.75 16 20 C -0.11 -0.99 5.21 30.64 0.16 -0.83 16 21 C -0.08 -0.70 5.67 30.70 0.17 -0.52 16 22 C -0.13 -1.25 1.97 -52.20 -0.10 -1.36 16 23 C -0.18 -1.80 9.93 30.55 0.30 -1.50 16 24 C -0.18 -1.68 9.99 30.54 0.31 -1.38 16 25 C -0.08 -0.84 5.67 30.71 0.17 -0.67 16 26 C -0.10 -1.08 5.13 30.63 0.16 -0.92 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 29 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 30 H 0.42 7.26 8.47 -92.71 -0.79 6.48 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.35 3.28 8.73 -89.70 -0.78 2.49 16 38 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 0.55 8.09 -2.39 -0.02 0.53 16 44 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 50 H 0.06 0.64 8.09 -2.38 -0.02 0.62 16 51 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 52 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -74.56 428.80 -0.20 -74.76 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.69 Total: 20.75 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 4.97 Total: -17.40 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -5.31 Total: -87.12 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -74.56 -0.20 -74.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814070.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.736 kcal (2) G-P(sol) polarization free energy of solvation -74.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds