Wall clock time and date at job start Sat Apr 11 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47242 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47212 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47074 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99664 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46824 * 179.97438 * 11 10 9 13 13 O 1.21300 * 120.00202 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00172 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00262 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00089 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00104 * 180.02562 * 15 14 12 18 18 N 1.31416 * 119.99995 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00075 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47077 * 89.99976 * 19 17 15 21 21 H 1.48510 * 109.46978 * 209.99705 * 19 17 15 22 22 H 1.48502 * 109.47106 * 329.99425 * 19 17 15 23 23 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 24 24 O 1.21284 * 119.99754 * 180.27842 * 23 2 1 25 25 C 1.50696 * 120.00137 * 0.28058 * 23 2 1 26 26 C 1.53001 * 117.49887 * 248.61985 * 25 23 2 27 27 C 1.52994 * 59.99933 * 252.50574 * 26 25 23 28 28 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 29 29 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 30 30 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 31 31 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 32 32 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 33 33 H 0.97000 * 119.99813 * 0.02562 * 6 4 3 34 34 H 1.08997 * 109.47383 * 300.00029 * 7 6 4 35 35 H 1.09000 * 109.47008 * 60.00245 * 7 6 4 36 36 H 1.08997 * 109.47040 * 300.00343 * 8 7 6 37 37 H 1.09000 * 109.46833 * 60.00243 * 8 7 6 38 38 H 1.09008 * 109.47070 * 300.00333 * 9 8 7 39 39 H 1.09003 * 109.46707 * 59.99943 * 9 8 7 40 40 H 1.00906 * 110.99895 * 56.04854 * 10 9 8 41 41 H 1.08997 * 109.47660 * 299.99920 * 11 10 9 42 42 H 1.08996 * 109.46835 * 60.00561 * 11 10 9 43 43 H 0.97003 * 119.99781 * 359.97438 * 14 12 11 44 44 H 0.97007 * 119.99784 * 179.97438 * 18 17 15 45 45 H 1.09004 * 115.54642 * 34.32831 * 25 23 2 46 46 H 1.09001 * 117.49733 * 0.02562 * 26 25 23 47 47 H 1.08997 * 117.49999 * 145.01700 * 26 25 23 48 48 H 1.09004 * 117.50553 * 252.50777 * 27 26 25 49 49 H 1.09012 * 117.51513 * 107.47863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 4.1314 4.5928 -3.0484 9 6 4.3926 5.0309 -4.4909 10 7 5.1267 6.3033 -4.4909 11 6 5.3962 6.7554 -5.8624 12 6 6.1483 8.0607 -5.8222 13 8 6.4323 8.5645 -4.7560 14 7 6.5054 8.6684 -6.9710 15 6 7.1901 9.8555 -6.9345 16 1 7.4429 10.3041 -5.9852 17 6 7.5578 10.4822 -8.1188 18 7 7.2497 9.9367 -9.2740 19 14 8.4900 12.1002 -8.0691 20 1 9.9501 11.8298 -8.0492 21 1 8.1517 12.9036 -9.2714 22 1 8.1094 12.8535 -6.8472 23 6 2.1388 -1.1672 0.0057 24 8 3.3517 -1.1672 0.0108 25 6 1.3854 -2.4723 0.0058 26 6 1.4552 -3.3283 1.2720 27 6 2.2073 -3.7627 0.0124 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6063 2.0296 0.5094 32 1 3.1478 1.1396 0.5181 33 1 3.4299 3.3951 -0.9299 34 1 3.9587 2.5066 -3.5581 35 1 2.4169 3.3961 -3.5662 36 1 3.5398 5.3532 -2.5388 37 1 5.0818 4.4643 -2.5304 38 1 4.9845 4.2702 -5.0002 39 1 3.4423 5.1592 -5.0093 40 1 5.9819 6.2273 -3.9609 41 1 5.9949 6.0066 -6.3809 42 1 4.4532 6.8961 -6.3905 43 1 6.2786 8.2653 -7.8237 44 1 7.5060 10.3744 -10.1009 45 1 0.4493 -2.4747 -0.5528 46 1 2.0459 -2.9473 2.1051 47 1 0.5650 -3.8940 1.5468 48 1 1.8120 -4.6142 -0.5415 49 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159208886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:50 Heat of formation + Delta-G solvation = -79.055371 kcal Electronic energy + Delta-G solvation = -27785.692758 eV Core-core repulsion = 23555.762058 eV Total energy + Delta-G solvation = -4229.930700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83234 -39.58303 -38.31708 -36.88673 -36.44690 -35.77681 -34.84780 -33.84301 -31.72116 -31.16797 -29.57087 -27.23281 -26.89730 -24.99694 -24.03419 -23.02540 -22.88690 -21.73614 -20.82337 -19.44355 -19.20830 -18.02485 -17.89280 -17.60944 -16.96544 -16.38043 -16.11610 -15.73130 -15.60586 -15.40991 -15.07162 -14.67854 -14.49954 -14.35007 -14.22741 -13.77837 -13.48470 -13.45008 -13.33952 -13.12632 -13.01192 -12.78414 -12.35131 -12.03299 -12.02274 -11.84926 -11.79417 -11.47050 -11.42790 -11.11694 -11.08402 -10.98890 -10.94365 -10.44796 -10.39144 -10.26161 -10.21563 -9.50838 -9.36159 -9.14660 -8.47275 -8.07616 -7.95863 -6.41518 -3.82429 1.98237 2.32191 2.34347 2.96492 3.18063 3.26710 3.32735 3.38841 3.90957 3.96653 4.08658 4.28246 4.30380 4.38413 4.39778 4.51261 4.61296 4.69393 4.80883 4.87632 4.95193 4.99823 5.05056 5.08753 5.17664 5.24442 5.26286 5.28306 5.42196 5.44651 5.50812 5.61717 5.65173 5.79458 5.83469 5.95879 5.98400 6.02593 6.15531 6.26977 6.81253 7.15797 7.18955 7.55361 7.64068 7.71314 7.91380 8.06454 8.61430 9.17971 9.54489 10.05881 10.76212 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.041557 B = 0.001221 C = 0.001216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.611823 B =22926.362179 C =23025.873957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.598 5.598 3 C 0.096 3.904 4 C 0.495 3.505 5 O -0.532 6.532 6 N -0.728 5.728 7 C 0.122 3.878 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.669 5.669 11 C 0.050 3.950 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.551 3.449 24 O -0.536 6.536 25 C -0.193 4.193 26 C -0.152 4.152 27 C -0.147 4.147 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.402 0.598 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.349 0.651 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.126 0.874 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -24.894 19.726 35.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.330 5.330 3 C -0.031 4.031 4 C 0.280 3.720 5 O -0.407 6.407 6 N -0.381 5.381 7 C -0.002 4.002 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.226 3.774 13 O -0.468 6.468 14 N -0.200 5.200 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C 0.340 3.660 24 O -0.412 6.412 25 C -0.214 4.214 26 C -0.190 4.190 27 C -0.184 4.184 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.168 0.832 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.144 0.856 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.307 -24.590 19.629 35.438 hybrid contribution 1.008 0.405 -0.786 1.341 sum -15.299 -24.184 18.843 34.263 Atomic orbital electron populations 1.21882 0.78501 1.03335 1.02613 1.47260 1.07296 1.04659 1.73826 1.21327 1.00428 0.86857 0.94444 1.21175 0.77908 0.80795 0.92143 1.90712 1.50681 1.53247 1.46109 1.45982 1.58566 1.24128 1.09419 1.21321 1.00432 0.96105 0.82384 1.21742 1.00956 0.95747 0.98241 1.21828 0.99175 0.90345 0.95446 1.60067 1.28363 1.28376 1.13364 1.21672 1.00260 0.96108 0.90189 1.19813 0.85184 0.87394 0.85036 1.90519 1.59489 1.67171 1.29667 1.41861 1.49983 1.21357 1.06782 1.19710 1.30974 0.97742 0.94556 0.87914 1.25263 0.98150 0.99862 0.94624 1.69618 1.47046 1.40143 0.97497 0.85856 0.79402 0.81170 0.77846 1.20423 1.20909 1.19390 1.19695 0.87232 0.84334 0.74775 1.90702 1.13937 1.87149 1.49449 1.22175 1.02932 0.90558 1.05728 1.22950 1.03281 1.01418 0.91318 1.22976 1.00155 0.95211 1.00098 0.91955 0.90391 0.90837 0.87190 0.86774 0.76367 0.91508 0.91267 0.90090 0.91207 0.95248 0.90796 0.83181 0.93803 0.89554 0.77439 0.91867 0.85639 0.88240 0.87674 0.87766 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 10.05 59.85 0.60 0.96 16 2 N -0.60 -4.67 2.36 -182.95 -0.43 -5.10 16 3 C 0.10 0.67 5.93 -5.19 -0.03 0.64 16 4 C 0.50 5.02 7.90 -10.99 -0.09 4.93 16 5 O -0.53 -7.68 16.43 5.56 0.09 -7.59 16 6 N -0.73 -5.98 5.56 -60.30 -0.33 -6.32 16 7 C 0.12 1.15 5.67 -4.04 -0.02 1.13 16 8 C -0.13 -1.22 5.59 -26.73 -0.15 -1.37 16 9 C 0.06 0.74 5.68 -3.83 -0.02 0.72 16 10 N -0.67 -10.67 6.13 -115.06 -0.70 -11.37 16 11 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 12 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 13 O -0.58 -15.95 15.78 5.54 0.09 -15.86 16 14 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 15 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 16 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 19 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.55 5.51 7.46 -10.99 -0.08 5.43 16 24 O -0.54 -7.36 15.84 5.55 0.09 -7.27 16 25 C -0.19 -1.31 4.79 -91.77 -0.44 -1.75 16 26 C -0.15 -0.74 10.23 -26.73 -0.27 -1.01 16 27 C -0.15 -0.94 10.04 -26.74 -0.27 -1.21 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.21 6.64 -51.93 -0.34 -0.14 16 30 H 0.07 0.18 7.89 -51.93 -0.41 -0.23 16 31 H 0.11 0.36 7.89 -51.93 -0.41 -0.05 16 32 H 0.11 0.80 7.42 -51.93 -0.39 0.42 16 33 H 0.40 2.15 8.47 -40.82 -0.35 1.81 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.34 8.14 -51.92 -0.42 -0.09 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.13 0.64 7.27 -51.93 -0.38 0.26 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.11 0.89 7.67 -51.92 -0.40 0.49 16 LS Contribution 416.58 15.07 6.28 6.28 Total: -1.00 -37.75 416.58 -8.32 -46.07 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -7.91 Total: 11.80 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -1.13 Total: 11.66 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.81 Total: -61.17 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: 0.27 Total: -30.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -37.75 -8.32 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159208886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.985 kcal (2) G-P(sol) polarization free energy of solvation -37.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds