Wall clock time and date at job start Sat Apr 11 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47242 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47212 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47074 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99664 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46824 * 179.97438 * 11 10 9 13 13 O 1.21300 * 120.00202 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00172 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00262 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00089 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00104 * 180.02562 * 15 14 12 18 18 N 1.31416 * 119.99995 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00075 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47077 * 89.99976 * 19 17 15 21 21 H 1.48510 * 109.46978 * 209.99705 * 19 17 15 22 22 H 1.48502 * 109.47106 * 329.99425 * 19 17 15 23 23 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 24 24 O 1.21284 * 119.99754 * 180.27842 * 23 2 1 25 25 C 1.50696 * 120.00137 * 0.28058 * 23 2 1 26 26 C 1.53001 * 117.49887 * 248.61985 * 25 23 2 27 27 C 1.52994 * 59.99933 * 252.50574 * 26 25 23 28 28 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 29 29 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 30 30 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 31 31 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 32 32 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 33 33 H 0.97000 * 119.99813 * 0.02562 * 6 4 3 34 34 H 1.08997 * 109.47383 * 300.00029 * 7 6 4 35 35 H 1.09000 * 109.47008 * 60.00245 * 7 6 4 36 36 H 1.08997 * 109.47040 * 300.00343 * 8 7 6 37 37 H 1.09000 * 109.46833 * 60.00243 * 8 7 6 38 38 H 1.09008 * 109.47070 * 300.00333 * 9 8 7 39 39 H 1.09003 * 109.46707 * 59.99943 * 9 8 7 40 40 H 1.00906 * 110.99895 * 56.04854 * 10 9 8 41 41 H 1.08997 * 109.47660 * 299.99920 * 11 10 9 42 42 H 1.08996 * 109.46835 * 60.00561 * 11 10 9 43 43 H 0.97003 * 119.99781 * 359.97438 * 14 12 11 44 44 H 0.97007 * 119.99784 * 179.97438 * 18 17 15 45 45 H 1.09004 * 115.54642 * 34.32831 * 25 23 2 46 46 H 1.09001 * 117.49733 * 0.02562 * 26 25 23 47 47 H 1.08997 * 117.49999 * 145.01700 * 26 25 23 48 48 H 1.09004 * 117.50553 * 252.50777 * 27 26 25 49 49 H 1.09012 * 117.51513 * 107.47863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 4.1314 4.5928 -3.0484 9 6 4.3926 5.0309 -4.4909 10 7 5.1267 6.3033 -4.4909 11 6 5.3962 6.7554 -5.8624 12 6 6.1483 8.0607 -5.8222 13 8 6.4323 8.5645 -4.7560 14 7 6.5054 8.6684 -6.9710 15 6 7.1901 9.8555 -6.9345 16 1 7.4429 10.3041 -5.9852 17 6 7.5578 10.4822 -8.1188 18 7 7.2497 9.9367 -9.2740 19 14 8.4900 12.1002 -8.0691 20 1 9.9501 11.8298 -8.0492 21 1 8.1517 12.9036 -9.2714 22 1 8.1094 12.8535 -6.8472 23 6 2.1388 -1.1672 0.0057 24 8 3.3517 -1.1672 0.0108 25 6 1.3854 -2.4723 0.0058 26 6 1.4552 -3.3283 1.2720 27 6 2.2073 -3.7627 0.0124 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6063 2.0296 0.5094 32 1 3.1478 1.1396 0.5181 33 1 3.4299 3.3951 -0.9299 34 1 3.9587 2.5066 -3.5581 35 1 2.4169 3.3961 -3.5662 36 1 3.5398 5.3532 -2.5388 37 1 5.0818 4.4643 -2.5304 38 1 4.9845 4.2702 -5.0002 39 1 3.4423 5.1592 -5.0093 40 1 5.9819 6.2273 -3.9609 41 1 5.9949 6.0066 -6.3809 42 1 4.4532 6.8961 -6.3905 43 1 6.2786 8.2653 -7.8237 44 1 7.5060 10.3744 -10.1009 45 1 0.4493 -2.4747 -0.5528 46 1 2.0459 -2.9473 2.1051 47 1 0.5650 -3.8940 1.5468 48 1 1.8120 -4.6142 -0.5415 49 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159208886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:49 Heat of formation + Delta-G solvation = -109.229678 kcal Electronic energy + Delta-G solvation = -27787.001214 eV Core-core repulsion = 23555.762058 eV Total energy + Delta-G solvation = -4231.239156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51603 -40.36405 -40.15117 -37.74404 -37.18187 -36.50673 -36.08545 -35.63406 -33.30766 -32.61055 -30.26746 -28.45158 -27.57166 -26.48521 -25.02458 -24.00565 -23.32950 -22.61440 -21.60583 -21.06274 -20.03488 -19.90379 -18.60948 -18.35017 -17.87683 -17.57270 -17.27162 -16.75015 -16.51737 -16.41026 -16.21811 -15.94587 -15.73018 -15.43316 -15.21128 -15.04722 -14.76832 -14.42277 -14.34723 -13.87704 -13.59191 -13.55373 -13.46012 -13.30198 -13.17981 -12.88957 -12.81234 -12.71987 -12.45040 -12.44802 -12.41930 -12.11864 -11.87255 -11.58151 -11.51196 -11.44961 -11.27390 -10.96988 -10.36691 -10.15625 -10.02546 -9.78172 -9.36135 -8.47351 -5.96421 1.31326 1.37976 1.41893 1.54835 1.55592 1.79563 2.03941 2.25823 2.31728 2.88729 2.94436 3.19972 3.48461 3.51019 3.74821 3.81571 3.96290 3.97704 4.09185 4.13316 4.16220 4.24908 4.30156 4.33036 4.35646 4.46953 4.53889 4.57063 4.67621 4.68443 4.72443 4.75320 4.86920 4.94339 5.00890 5.12929 5.18264 5.20342 5.32966 5.40284 5.40593 5.86799 6.08089 6.22909 6.38239 6.48823 6.59008 7.04348 7.11557 7.19337 7.55018 8.10022 8.70042 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.041557 B = 0.001221 C = 0.001216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.611823 B =22926.362179 C =23025.873957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.598 5.598 3 C 0.095 3.905 4 C 0.490 3.510 5 O -0.581 6.581 6 N -0.717 5.717 7 C 0.129 3.871 8 C -0.114 4.114 9 C 0.062 3.938 10 N -0.682 5.682 11 C 0.064 3.936 12 C 0.437 3.563 13 O -0.623 6.623 14 N -0.573 5.573 15 C -0.336 4.336 16 H 0.080 0.920 17 C -0.012 4.012 18 N -0.921 5.921 19 Si 0.994 3.006 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.537 3.463 24 O -0.588 6.588 25 C -0.202 4.202 26 C -0.128 4.128 27 C -0.162 4.162 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.112 0.888 33 H 0.418 0.582 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.080 0.920 40 H 0.345 0.655 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.145 0.855 46 H 0.092 0.908 47 H 0.136 0.864 48 H 0.123 0.877 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.854 -25.189 20.628 37.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C -0.031 4.031 4 C 0.277 3.723 5 O -0.461 6.461 6 N -0.370 5.370 7 C 0.004 3.996 8 C -0.152 4.152 9 C -0.067 4.067 10 N -0.314 5.314 11 C -0.069 4.069 12 C 0.224 3.776 13 O -0.510 6.510 14 N -0.210 5.210 15 C -0.466 4.466 16 H 0.098 0.902 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.197 1.197 23 C 0.327 3.673 24 O -0.468 6.468 25 C -0.223 4.223 26 C -0.165 4.165 27 C -0.199 4.199 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.172 0.828 32 H 0.130 0.870 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.164 0.836 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.163 0.837 46 H 0.110 0.890 47 H 0.154 0.846 48 H 0.141 0.859 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.877 -24.874 20.542 36.882 hybrid contribution 1.459 0.482 -1.050 1.861 sum -16.418 -24.392 19.492 35.277 Atomic orbital electron populations 1.22113 0.76399 1.05698 1.02521 1.47470 1.08712 1.04351 1.72352 1.21523 1.01388 0.87728 0.92470 1.21797 0.77074 0.80466 0.93007 1.90687 1.52864 1.54743 1.47776 1.45894 1.57719 1.23880 1.09514 1.21146 0.99886 0.95576 0.83001 1.21580 1.01255 0.95523 0.96856 1.21910 0.98913 0.88718 0.97155 1.60074 1.28389 1.30787 1.12153 1.21539 1.00369 0.93071 0.91888 1.20879 0.84130 0.88749 0.83837 1.90486 1.60814 1.68720 1.30947 1.41934 1.50344 1.21134 1.07558 1.19691 1.33177 0.99477 0.94221 0.90244 1.26049 0.98378 1.02813 0.93931 1.69678 1.47216 1.41303 0.97948 0.84922 0.78271 0.77124 0.77984 1.19610 1.19524 1.19697 1.20360 0.86969 0.85962 0.74014 1.90665 1.16103 1.88015 1.52035 1.22257 1.03249 0.89101 1.07674 1.23043 1.03618 0.99840 0.90044 1.23015 0.98882 0.95875 1.02123 0.93187 0.88339 0.88299 0.82818 0.86989 0.74507 0.92992 0.91742 0.89732 0.90634 0.94457 0.90172 0.83634 0.91664 0.87773 0.76975 0.91280 0.83727 0.88974 0.84615 0.85863 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.05 127.77 1.28 1.79 16 2 N -0.60 -8.75 2.36 -851.13 -2.01 -10.76 16 3 C 0.10 1.20 5.93 85.63 0.51 1.71 16 4 C 0.49 9.68 7.90 87.66 0.69 10.38 16 5 O -0.58 -17.04 16.43 -3.03 -0.05 -17.09 16 6 N -0.72 -11.00 5.56 -463.07 -2.57 -13.57 16 7 C 0.13 2.33 5.67 86.38 0.49 2.82 16 8 C -0.11 -1.98 5.59 30.60 0.17 -1.81 16 9 C 0.06 1.37 5.68 86.30 0.49 1.86 16 10 N -0.68 -20.89 6.13 -517.93 -3.17 -24.07 16 11 C 0.06 2.19 6.17 85.56 0.53 2.71 16 12 C 0.44 20.90 7.82 87.66 0.69 21.58 16 13 O -0.62 -34.61 15.78 -3.09 -0.05 -34.66 16 14 N -0.57 -29.61 5.29 -306.99 -1.62 -31.23 16 15 C -0.34 -19.22 9.68 84.04 0.81 -18.41 16 16 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 17 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 18 N -0.92 -49.92 13.05 21.66 0.28 -49.63 16 19 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.54 10.80 7.46 87.66 0.65 11.46 16 24 O -0.59 -16.99 15.84 -3.04 -0.05 -17.04 16 25 C -0.20 -2.57 4.79 -11.54 -0.06 -2.62 16 26 C -0.13 -1.03 10.23 30.59 0.31 -0.72 16 27 C -0.16 -2.03 10.04 30.59 0.31 -1.73 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.26 6.64 -2.39 -0.02 0.24 16 30 H 0.10 0.18 7.89 -2.39 -0.02 0.16 16 31 H 0.15 0.51 7.89 -2.39 -0.02 0.49 16 32 H 0.11 1.51 7.42 -2.39 -0.02 1.49 16 33 H 0.42 3.73 8.47 -92.71 -0.79 2.94 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.35 11.01 8.43 -89.69 -0.76 10.25 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 42 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 44 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 45 H 0.15 1.21 7.27 -2.39 -0.02 1.20 16 46 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.08 1.47 7.67 -2.38 -0.02 1.45 16 Total: -1.00 -84.85 416.58 -1.15 -86.00 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -1.28 Total: 38.18 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: 7.35 Total: 28.85 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -9.10 Total: -129.27 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -0.15 Total: -68.79 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -84.85 -1.15 -86.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159208886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.226 kcal (2) G-P(sol) polarization free energy of solvation -84.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds