Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99972 * 2 1 4 4 O 1.21584 * 120.00153 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99957 * 180.02562 * 3 2 1 6 6 C 1.46493 * 120.00293 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47565 * 179.97438 * 6 5 3 8 8 C 1.50691 * 109.47351 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99922 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00079 * 180.02562 * 8 7 6 11 11 C 1.46836 * 120.75569 * 359.97438 * 10 8 7 12 12 C 1.53147 * 108.52281 * 125.44350 * 11 10 8 13 13 C 1.52504 * 109.74762 * 54.54472 * 12 11 10 14 14 H 1.09005 * 108.93614 * 181.04377 * 13 12 11 15 15 O 1.42694 * 110.62451 * 61.33938 * 13 12 11 16 16 C 1.43087 * 113.86624 * 174.64287 * 15 13 12 17 17 C 1.53224 * 109.44493 * 61.64575 * 16 15 13 18 18 N 1.47169 * 108.70509 * 308.42178 * 17 16 15 19 19 C 1.36934 * 121.22175 * 230.96020 * 18 17 16 20 20 H 1.08002 * 120.00060 * 153.54731 * 19 18 17 21 21 C 1.38816 * 120.00325 * 333.54363 * 19 18 17 22 22 N 1.31617 * 119.99720 * 343.46106 * 21 19 18 23 23 Si 1.86797 * 120.00318 * 163.45622 * 21 19 18 24 24 H 1.48502 * 109.47088 * 60.00098 * 23 21 19 25 25 H 1.48503 * 109.47375 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47175 * 300.00505 * 23 21 19 27 27 C 1.47592 * 117.55294 * 50.93535 * 18 17 16 28 28 H 1.09004 * 110.31208 * 187.71286 * 27 18 17 29 29 C 1.46799 * 120.72460 * 180.02562 * 10 8 7 30 30 H 1.09000 * 109.46970 * 59.99923 * 1 2 3 31 31 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47210 * 300.00412 * 1 2 3 33 33 H 0.97001 * 119.99719 * 179.97438 * 2 1 3 34 34 H 0.97000 * 119.99582 * 0.02562 * 5 3 2 35 35 H 1.09007 * 109.47079 * 59.99782 * 6 5 3 36 36 H 1.09006 * 109.46928 * 300.00350 * 6 5 3 37 37 H 1.09000 * 109.46861 * 60.00267 * 7 6 5 38 38 H 1.08999 * 109.46885 * 300.00622 * 7 6 5 39 39 H 1.09005 * 109.54991 * 5.75875 * 11 10 8 40 40 H 1.08999 * 109.65349 * 245.18393 * 11 10 8 41 41 H 1.08999 * 109.41938 * 294.47867 * 12 11 10 42 42 H 1.09008 * 109.41953 * 174.61365 * 12 11 10 43 43 H 1.08996 * 109.47429 * 181.64503 * 16 15 13 44 44 H 1.08996 * 109.47256 * 301.65234 * 16 15 13 45 45 H 1.09006 * 109.59742 * 68.19009 * 17 16 15 46 46 H 1.08996 * 109.59630 * 188.49541 * 17 16 15 47 47 H 0.97005 * 119.99997 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.52316 * 114.36891 * 29 10 8 49 49 H 1.09009 * 109.56945 * 354.21253 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4358 -0.0011 7 6 5.7235 2.1563 -0.0010 8 6 6.4769 3.4613 -0.0009 9 8 5.8705 4.5117 -0.0014 10 7 7.8247 3.4613 -0.0013 11 6 8.5756 2.1995 -0.0013 12 6 9.5477 2.2117 -1.1846 13 6 10.4216 3.4599 -1.1207 14 1 11.0948 3.4647 -1.9779 15 8 11.1972 3.4697 0.0770 16 6 12.1326 4.5498 0.1522 17 6 11.3763 5.8822 0.1294 18 7 10.4576 5.8838 -1.0203 19 6 10.4384 6.9228 -1.9120 20 1 10.1152 6.7558 -2.9289 21 6 10.8342 8.1908 -1.5090 22 7 10.9141 8.4789 -0.2272 23 14 11.2536 9.4883 -2.7857 24 1 10.0685 9.7386 -3.6448 25 1 11.6449 10.7472 -2.1021 26 1 12.3814 9.0103 -3.6252 27 6 9.5583 4.7241 -1.1773 28 1 9.0316 4.7799 -2.1300 29 6 8.5747 4.7232 -0.0007 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.9500 -0.8401 0.0004 34 1 3.9716 0.3271 -0.0013 35 1 3.9562 3.0077 0.8889 36 1 3.9555 3.0073 -0.8911 37 1 5.9868 1.5844 -0.8907 38 1 5.9867 1.5850 0.8892 39 1 7.8838 1.3633 -0.1039 40 1 9.1336 2.1050 0.9303 41 1 8.9834 2.2119 -2.1172 42 1 10.1797 1.3245 -1.1437 43 1 12.7041 4.4719 1.0771 44 1 12.8114 4.5026 -0.6994 45 1 10.8073 5.9954 1.0523 46 1 12.0861 6.7039 0.0345 47 1 11.1910 9.3648 0.0545 48 1 9.1255 4.8192 0.9350 49 1 7.8828 5.5593 -0.1035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177001749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = -73.812039 kcal Electronic energy + Delta-G solvation = -30727.235171 eV Core-core repulsion = 26497.531839 eV Total energy + Delta-G solvation = -4229.703332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.34635 -39.96508 -38.65564 -35.89371 -35.43904 -34.70556 -34.65129 -32.01535 -31.55647 -30.95687 -29.45463 -27.57081 -26.83800 -25.06136 -24.01066 -23.24253 -22.58013 -21.47554 -21.20626 -19.57536 -18.73974 -18.17911 -17.29168 -16.91841 -16.22965 -16.21569 -15.57562 -15.49903 -15.42870 -15.10971 -14.67508 -14.58397 -14.54662 -14.23740 -13.90381 -13.64123 -13.41218 -13.16482 -13.00854 -12.69151 -12.54918 -12.40735 -12.31117 -12.07229 -11.89377 -11.58773 -11.38279 -11.08136 -10.96439 -10.77451 -10.62154 -10.46325 -10.28599 -10.21135 -10.01498 -9.66776 -9.55573 -9.53807 -9.07755 -9.02524 -8.61064 -8.26506 -6.77610 -5.87282 -3.31480 2.41504 2.82525 3.02058 3.25582 3.35757 3.41007 3.41970 4.00609 4.28580 4.40224 4.57136 4.68725 4.86360 4.88744 4.93156 5.09765 5.21364 5.22883 5.27894 5.33369 5.40734 5.48263 5.59925 5.73543 5.73648 5.77839 5.88420 5.97297 6.01098 6.05403 6.12204 6.13184 6.23690 6.26990 6.33044 6.40534 6.61556 6.64456 6.73487 6.92610 7.06526 7.46318 7.69303 7.69912 7.75101 7.85316 8.28657 8.37877 8.42625 9.07368 9.68898 10.26078 11.20319 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.002444 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.084849 B =11454.967845 C =12615.064128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.754 5.754 3 C 0.700 3.300 4 O -0.585 6.585 5 N -0.747 5.747 6 C 0.152 3.848 7 C -0.151 4.151 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.605 5.605 11 C 0.112 3.888 12 C -0.123 4.123 13 C 0.080 3.920 14 H 0.052 0.948 15 O -0.387 6.387 16 C 0.039 3.961 17 C 0.137 3.863 18 N -0.584 5.584 19 C -0.257 4.257 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.134 3.866 28 H 0.074 0.926 29 C 0.106 3.894 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.029 0.971 46 H 0.096 0.904 47 H 0.256 0.744 48 H 0.069 0.931 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 -22.901 1.253 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.461 6.461 5 N -0.403 5.403 6 C 0.028 3.972 7 C -0.192 4.192 8 C 0.299 3.701 9 O -0.414 6.414 10 N -0.339 5.339 11 C -0.011 4.011 12 C -0.161 4.161 13 C 0.020 3.980 14 H 0.070 0.930 15 O -0.307 6.307 16 C -0.038 4.038 17 C 0.012 3.988 18 N -0.306 5.306 19 C -0.386 4.386 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.736 3.264 24 H -0.207 1.207 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.025 3.975 28 H 0.093 0.907 29 C -0.018 4.018 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.114 0.886 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.399 -21.228 1.467 23.262 hybrid contribution 0.888 0.083 -0.739 1.158 sum -8.511 -21.145 0.729 22.805 Atomic orbital electron populations 1.21387 0.78166 1.01841 1.02390 1.44918 1.07776 1.07075 1.81181 1.15950 0.81755 0.84288 0.78021 1.90973 1.67778 1.30282 1.57115 1.45104 1.04738 1.09833 1.80577 1.20919 0.88121 0.83933 1.04233 1.21821 0.95190 0.97513 1.04632 1.20206 0.82297 0.90588 0.76960 1.90760 1.67459 1.33442 1.49733 1.48261 1.05029 1.08271 1.72343 1.21628 0.94349 0.85524 0.99589 1.21795 0.97521 0.98050 0.98771 1.22223 0.93042 0.94837 0.87906 0.93034 1.87710 1.53181 1.49584 1.40210 1.23333 0.91234 0.89050 1.00214 1.21458 0.93446 0.94143 0.89762 1.44288 1.37820 1.19133 1.29374 1.19122 1.42097 0.86744 0.90648 0.91381 1.25070 1.01520 0.96839 0.95906 1.70006 1.50118 1.20885 1.13332 0.86305 0.78576 0.80753 0.80752 1.20726 1.21530 1.20975 1.21626 0.90513 0.88503 0.96835 0.90739 1.22340 0.94353 0.84527 1.00547 0.92355 0.90740 0.92374 0.77087 0.77247 0.90555 0.90497 0.88403 0.88469 0.90442 0.90553 0.90466 0.90418 0.90128 0.94100 0.95331 0.88634 0.93350 0.91315 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.68 10.70 59.85 0.64 1.32 16 2 N -0.75 -5.41 5.72 -72.07 -0.41 -5.82 16 3 C 0.70 8.04 8.57 -86.92 -0.74 7.29 16 4 O -0.58 -9.81 16.34 5.29 0.09 -9.72 16 5 N -0.75 -6.62 5.56 -65.23 -0.36 -6.98 16 6 C 0.15 1.78 4.96 -4.05 -0.02 1.76 16 7 C -0.15 -1.45 4.16 -27.89 -0.12 -1.56 16 8 C 0.51 7.87 7.70 -10.99 -0.08 7.79 16 9 O -0.54 -10.89 15.40 5.55 0.09 -10.80 16 10 N -0.61 -9.30 2.96 -172.87 -0.51 -9.81 16 11 C 0.11 1.28 6.17 -3.78 -0.02 1.25 16 12 C -0.12 -1.48 5.82 -26.91 -0.16 -1.63 16 13 C 0.08 1.33 2.72 -26.89 -0.07 1.26 16 14 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 15 O -0.39 -6.89 9.59 -35.23 -0.34 -7.23 16 16 C 0.04 0.73 6.97 37.27 0.26 0.99 16 17 C 0.14 3.15 4.93 -3.56 -0.02 3.13 16 18 N -0.58 -14.08 2.71 -163.85 -0.44 -14.53 16 19 C -0.26 -6.89 9.69 -15.06 -0.15 -7.03 16 20 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 21 C 0.01 0.16 4.96 -17.43 -0.09 0.08 16 22 N -0.90 -25.58 11.14 55.49 0.62 -24.96 16 23 Si 0.91 21.52 29.58 -169.99 -5.03 16.49 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.13 2.71 3.03 -67.06 -0.20 2.51 16 28 H 0.07 1.56 7.99 -51.93 -0.42 1.14 16 29 C 0.11 2.11 5.62 -3.70 -0.02 2.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 1.41 8.84 -40.82 -0.36 1.05 16 34 H 0.39 1.92 8.49 -40.82 -0.35 1.57 16 35 H 0.08 1.08 8.10 -51.93 -0.42 0.65 16 36 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.10 0.69 7.71 -51.93 -0.40 0.29 16 38 H 0.10 0.69 7.93 -51.93 -0.41 0.28 16 39 H 0.08 0.58 5.94 -51.93 -0.31 0.27 16 40 H 0.08 0.92 7.94 -51.93 -0.41 0.51 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 46 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.07 1.47 6.56 -51.93 -0.34 1.13 16 49 H 0.09 2.12 7.00 -51.92 -0.36 1.76 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -36.00 385.57 -9.11 -45.11 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.82 Total: 3.21 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: -0.79 Total: 19.24 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -1.11 Total: -62.09 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.17 Total: -27.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.00 -9.11 -45.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177001749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.700 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds