Wall clock time and date at job start Sat Apr 11 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 120.00157 * 2 1 4 4 O 1.21593 * 119.99868 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00335 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00322 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47144 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.46962 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99835 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99763 * 179.97438 * 8 7 6 11 11 C 1.46835 * 120.41286 * 0.02562 * 10 8 7 12 12 C 1.53376 * 109.23981 * 232.24598 * 11 10 8 13 13 C 1.52785 * 108.81815 * 306.15233 * 12 11 10 14 14 H 1.09000 * 109.34086 * 302.83821 * 13 12 11 15 15 O 1.42601 * 111.11579 * 182.04767 * 13 12 11 16 16 C 1.43150 * 113.61785 * 176.34411 * 15 13 12 17 17 C 1.53198 * 109.74378 * 61.68641 * 16 15 13 18 18 N 1.47348 * 108.80774 * 308.80568 * 17 16 15 19 19 C 1.36933 * 121.30665 * 230.22446 * 18 17 16 20 20 H 1.07997 * 120.00814 * 152.52901 * 19 18 17 21 21 C 1.38816 * 119.99697 * 332.53248 * 19 18 17 22 22 N 1.31616 * 120.00094 * 344.72219 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 164.72588 * 21 19 18 24 24 H 1.48504 * 109.47048 * 94.82492 * 23 21 19 25 25 H 1.48502 * 109.47206 * 214.82204 * 23 21 19 26 26 H 1.48500 * 109.47250 * 334.82748 * 23 21 19 27 27 C 1.46723 * 117.02253 * 50.57253 * 18 17 16 28 28 H 1.09009 * 110.61829 * 67.41739 * 27 18 17 29 29 C 1.47131 * 120.41056 * 180.02562 * 10 8 7 30 30 H 1.08999 * 109.46861 * 59.99731 * 1 2 3 31 31 H 1.08994 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47082 * 300.00291 * 1 2 3 33 33 H 0.96998 * 119.99672 * 179.97438 * 2 1 3 34 34 H 0.96998 * 119.99971 * 359.97438 * 5 3 2 35 35 H 1.09000 * 109.46978 * 59.99569 * 6 5 3 36 36 H 1.08997 * 109.46690 * 299.99715 * 6 5 3 37 37 H 1.09006 * 109.46895 * 59.99932 * 7 6 5 38 38 H 1.08997 * 109.47309 * 299.99599 * 7 6 5 39 39 H 1.09002 * 109.51231 * 352.17344 * 11 10 8 40 40 H 1.09004 * 109.50985 * 112.31651 * 11 10 8 41 41 H 1.08997 * 109.57803 * 65.95533 * 12 11 10 42 42 H 1.09000 * 109.57793 * 186.21878 * 12 11 10 43 43 H 1.09000 * 109.42579 * 181.76463 * 16 15 13 44 44 H 1.08996 * 109.42939 * 301.65569 * 16 15 13 45 45 H 1.09005 * 109.57795 * 68.59648 * 17 16 15 46 46 H 1.08994 * 109.58060 * 189.00377 * 17 16 15 47 47 H 0.97000 * 119.99985 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.72242 * 246.45498 * 29 10 8 49 49 H 1.09004 * 109.72338 * 7.07228 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 0.0000 7 6 5.7235 2.1563 -0.0001 8 6 6.4770 3.4614 -0.0001 9 8 5.8705 4.5117 0.0004 10 7 7.8247 3.4613 0.0003 11 6 8.5680 2.1950 0.0002 12 6 9.5881 2.2077 1.1455 13 6 10.4530 3.4610 1.0212 14 1 10.9329 3.4729 0.0426 15 8 11.4523 3.4985 2.0378 16 6 12.3469 4.6100 1.9220 17 6 11.5642 5.9202 2.0550 18 7 10.4232 5.8886 1.1232 19 6 10.1776 6.9258 0.2636 20 1 9.6678 6.7437 -0.6709 21 6 10.5839 8.2116 0.5933 22 7 10.9261 8.4963 1.8319 23 14 10.6451 9.5376 -0.7210 24 1 9.3774 10.3110 -0.7032 25 1 11.7853 10.4499 -0.4511 26 1 10.8209 8.9062 -2.0535 27 6 9.5612 4.7020 1.1649 28 1 9.0174 4.6555 2.1085 29 6 8.5695 4.7302 0.0008 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9500 -0.8401 0.0004 34 1 3.9717 0.3272 -0.0005 35 1 3.9562 3.0069 0.8905 36 1 3.9555 3.0080 -0.8895 37 1 5.9867 1.5851 -0.8904 38 1 5.9868 1.5844 0.8896 39 1 7.8744 1.3658 0.1397 40 1 9.0890 2.0788 -0.9502 41 1 9.0642 2.2186 2.1012 42 1 10.2173 1.3197 1.0840 43 1 13.0977 4.5547 2.7103 44 1 12.8389 4.5797 0.9499 45 1 11.1988 6.0254 3.0766 46 1 12.2137 6.7603 1.8089 47 1 11.2104 9.3947 2.0622 48 1 9.1095 4.8401 -0.9396 49 1 7.8775 5.5629 0.1271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177001752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:45 Heat of formation + Delta-G solvation = -73.671159 kcal Electronic energy + Delta-G solvation = -30617.037233 eV Core-core repulsion = 26387.340009 eV Total energy + Delta-G solvation = -4229.697223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.39306 -39.98036 -38.65531 -36.20402 -35.49495 -34.74763 -34.70056 -32.10414 -31.44719 -30.96894 -29.78860 -27.36204 -26.76572 -25.28944 -23.98157 -23.46739 -21.98343 -21.30242 -21.21276 -19.75818 -19.25136 -18.44094 -17.36750 -16.85121 -16.32365 -16.26472 -15.68119 -15.51799 -15.36188 -15.09189 -14.76027 -14.54721 -14.39196 -14.25436 -13.87640 -13.66758 -13.44451 -13.09655 -13.08460 -12.87192 -12.67815 -12.56094 -12.47142 -12.02822 -11.87105 -11.63707 -11.37468 -11.03329 -10.95764 -10.86105 -10.61506 -10.48328 -10.28867 -10.24357 -10.01554 -9.68126 -9.61570 -9.57428 -9.10294 -9.01970 -8.55229 -8.40078 -6.74985 -5.85624 -3.31483 2.38290 2.72582 3.00134 3.12332 3.35484 3.42940 3.43801 3.97040 4.20260 4.41449 4.51772 4.60194 4.81587 4.85235 4.85351 5.10860 5.16818 5.21781 5.26805 5.35364 5.36426 5.47097 5.48786 5.64580 5.70733 5.73526 5.84108 5.87017 5.90105 6.06787 6.11268 6.11602 6.20671 6.21923 6.30247 6.43004 6.59169 6.61211 6.67563 6.84205 7.10457 7.48352 7.54103 7.70091 7.72239 7.86021 8.28661 8.31525 8.37121 9.07934 9.71524 10.29590 11.22433 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.002531 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.534796 B =11061.826361 C =12476.024520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.584 6.584 5 N -0.747 5.747 6 C 0.152 3.848 7 C -0.152 4.152 8 C 0.516 3.484 9 O -0.531 6.531 10 N -0.611 5.611 11 C 0.112 3.888 12 C -0.125 4.125 13 C 0.076 3.924 14 H 0.053 0.947 15 O -0.390 6.390 16 C 0.040 3.960 17 C 0.141 3.859 18 N -0.586 5.586 19 C -0.259 4.259 20 H 0.072 0.928 21 C 0.007 3.993 22 N -0.901 5.901 23 Si 0.904 3.096 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.137 3.863 28 H 0.037 0.963 29 C 0.123 3.877 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.028 0.972 46 H 0.095 0.905 47 H 0.255 0.745 48 H 0.073 0.927 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 -22.926 -3.727 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.461 6.461 5 N -0.403 5.403 6 C 0.028 3.972 7 C -0.192 4.192 8 C 0.303 3.697 9 O -0.407 6.407 10 N -0.345 5.345 11 C -0.012 4.012 12 C -0.163 4.163 13 C 0.016 3.984 14 H 0.071 0.929 15 O -0.309 6.309 16 C -0.038 4.038 17 C 0.016 3.984 18 N -0.311 5.311 19 C -0.388 4.388 20 H 0.090 0.910 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.733 3.267 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.203 1.203 27 C 0.029 3.971 28 H 0.054 0.946 29 C 0.001 3.999 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.555 -21.276 -3.536 23.590 hybrid contribution 0.717 0.083 -0.647 0.969 sum -8.838 -21.193 -4.183 23.340 Atomic orbital electron populations 1.21389 0.78141 1.01859 1.02402 1.44915 1.07789 1.07069 1.81153 1.15946 0.81740 0.84300 0.78018 1.90977 1.67768 1.30281 1.57101 1.45093 1.04755 1.09802 1.80623 1.20918 0.88019 0.84000 1.04301 1.21834 0.95287 0.97341 1.04760 1.20211 0.82135 0.90723 0.76665 1.90773 1.67375 1.33420 1.49181 1.48279 1.05361 1.07919 1.72964 1.21707 0.94596 0.85898 0.98967 1.21846 0.97177 0.98121 0.99206 1.22461 0.89680 0.95101 0.91123 0.92924 1.87735 1.43807 1.47770 1.51599 1.23330 0.91941 0.88415 1.00112 1.21447 0.89687 0.94254 0.93041 1.44001 1.26232 1.16858 1.43975 1.19113 1.36764 0.85698 0.97181 0.91020 1.25093 1.01275 0.97062 0.95811 1.70017 1.48489 1.19912 1.16012 0.86258 0.77491 0.81704 0.81220 1.21204 1.21501 1.20321 1.21289 0.90925 0.88670 0.96232 0.94592 1.21797 0.94517 0.84708 0.98866 0.92360 0.90728 0.92346 0.77080 0.77232 0.90449 0.90494 0.88349 0.88229 0.89617 0.91105 0.90834 0.90253 0.90073 0.94109 0.95414 0.88694 0.93464 0.90916 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.66 10.70 59.85 0.64 1.30 16 2 N -0.75 -5.29 5.72 -72.07 -0.41 -5.70 16 3 C 0.70 7.89 8.57 -86.92 -0.74 7.14 16 4 O -0.58 -9.69 16.34 5.28 0.09 -9.61 16 5 N -0.75 -6.39 5.56 -65.22 -0.36 -6.76 16 6 C 0.15 1.71 4.96 -4.04 -0.02 1.69 16 7 C -0.15 -1.36 4.16 -27.88 -0.12 -1.48 16 8 C 0.52 7.57 7.69 -10.99 -0.08 7.48 16 9 O -0.53 -10.40 15.38 5.55 0.09 -10.31 16 10 N -0.61 -8.89 2.98 -172.71 -0.51 -9.41 16 11 C 0.11 1.15 6.32 -3.66 -0.02 1.13 16 12 C -0.12 -1.55 5.82 -26.65 -0.16 -1.71 16 13 C 0.08 1.32 2.49 -26.58 -0.07 1.25 16 14 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 15 O -0.39 -7.44 10.48 -35.23 -0.37 -7.81 16 16 C 0.04 0.77 6.95 37.26 0.26 1.02 16 17 C 0.14 3.33 5.41 -3.48 -0.02 3.32 16 18 N -0.59 -14.39 3.03 -164.43 -0.50 -14.89 16 19 C -0.26 -6.87 8.86 -15.06 -0.13 -7.00 16 20 H 0.07 1.86 6.28 -52.49 -0.33 1.53 16 21 C 0.01 0.19 4.99 -17.43 -0.09 0.10 16 22 N -0.90 -25.82 11.16 55.49 0.62 -25.20 16 23 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.14 2.84 3.02 -67.58 -0.20 2.64 16 28 H 0.04 0.84 8.14 -51.92 -0.42 0.41 16 29 C 0.12 2.33 4.49 -3.72 -0.02 2.32 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 1.35 8.84 -40.82 -0.36 0.99 16 34 H 0.39 1.79 8.49 -40.82 -0.35 1.45 16 35 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.10 0.61 7.96 -51.93 -0.41 0.20 16 38 H 0.10 0.67 7.66 -51.93 -0.40 0.27 16 39 H 0.09 0.56 5.91 -51.93 -0.31 0.26 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 2.44 6.23 -51.93 -0.32 2.11 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.07 1.39 7.33 -51.93 -0.38 1.01 16 49 H 0.10 2.31 6.81 -51.93 -0.35 1.95 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -36.76 385.56 -9.19 -45.95 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.84 Total: 2.16 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: -0.77 Total: 19.21 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -1.17 Total: -61.95 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.20 Total: -27.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.76 -9.19 -45.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177001752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.720 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds