Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 120.00157 * 2 1 4 4 O 1.21593 * 119.99868 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00335 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00322 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47144 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.46962 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99835 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99763 * 179.97438 * 8 7 6 11 11 C 1.46835 * 120.41286 * 0.02562 * 10 8 7 12 12 C 1.53376 * 109.23981 * 232.24598 * 11 10 8 13 13 C 1.52785 * 108.81815 * 306.15233 * 12 11 10 14 14 H 1.09000 * 109.34086 * 302.83821 * 13 12 11 15 15 O 1.42601 * 111.11579 * 182.04767 * 13 12 11 16 16 C 1.43150 * 113.61785 * 176.34411 * 15 13 12 17 17 C 1.53198 * 109.74378 * 61.68641 * 16 15 13 18 18 N 1.47348 * 108.80774 * 308.80568 * 17 16 15 19 19 C 1.36933 * 121.30665 * 230.22446 * 18 17 16 20 20 H 1.07997 * 120.00814 * 152.52901 * 19 18 17 21 21 C 1.38816 * 119.99697 * 332.53248 * 19 18 17 22 22 N 1.31616 * 120.00094 * 344.72219 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 164.72588 * 21 19 18 24 24 H 1.48504 * 109.47048 * 94.82492 * 23 21 19 25 25 H 1.48502 * 109.47206 * 214.82204 * 23 21 19 26 26 H 1.48500 * 109.47250 * 334.82748 * 23 21 19 27 27 C 1.46723 * 117.02253 * 50.57253 * 18 17 16 28 28 H 1.09009 * 110.61829 * 67.41739 * 27 18 17 29 29 C 1.47131 * 120.41056 * 180.02562 * 10 8 7 30 30 H 1.08999 * 109.46861 * 59.99731 * 1 2 3 31 31 H 1.08994 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47082 * 300.00291 * 1 2 3 33 33 H 0.96998 * 119.99672 * 179.97438 * 2 1 3 34 34 H 0.96998 * 119.99971 * 359.97438 * 5 3 2 35 35 H 1.09000 * 109.46978 * 59.99569 * 6 5 3 36 36 H 1.08997 * 109.46690 * 299.99715 * 6 5 3 37 37 H 1.09006 * 109.46895 * 59.99932 * 7 6 5 38 38 H 1.08997 * 109.47309 * 299.99599 * 7 6 5 39 39 H 1.09002 * 109.51231 * 352.17344 * 11 10 8 40 40 H 1.09004 * 109.50985 * 112.31651 * 11 10 8 41 41 H 1.08997 * 109.57803 * 65.95533 * 12 11 10 42 42 H 1.09000 * 109.57793 * 186.21878 * 12 11 10 43 43 H 1.09000 * 109.42579 * 181.76463 * 16 15 13 44 44 H 1.08996 * 109.42939 * 301.65569 * 16 15 13 45 45 H 1.09005 * 109.57795 * 68.59648 * 17 16 15 46 46 H 1.08994 * 109.58060 * 189.00377 * 17 16 15 47 47 H 0.97000 * 119.99985 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.72242 * 246.45498 * 29 10 8 49 49 H 1.09004 * 109.72338 * 7.07228 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 0.0000 7 6 5.7235 2.1563 -0.0001 8 6 6.4770 3.4614 -0.0001 9 8 5.8705 4.5117 0.0004 10 7 7.8247 3.4613 0.0003 11 6 8.5680 2.1950 0.0002 12 6 9.5881 2.2077 1.1455 13 6 10.4530 3.4610 1.0212 14 1 10.9329 3.4729 0.0426 15 8 11.4523 3.4985 2.0378 16 6 12.3469 4.6100 1.9220 17 6 11.5642 5.9202 2.0550 18 7 10.4232 5.8886 1.1232 19 6 10.1776 6.9258 0.2636 20 1 9.6678 6.7437 -0.6709 21 6 10.5839 8.2116 0.5933 22 7 10.9261 8.4963 1.8319 23 14 10.6451 9.5376 -0.7210 24 1 9.3774 10.3110 -0.7032 25 1 11.7853 10.4499 -0.4511 26 1 10.8209 8.9062 -2.0535 27 6 9.5612 4.7020 1.1649 28 1 9.0174 4.6555 2.1085 29 6 8.5695 4.7302 0.0008 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9500 -0.8401 0.0004 34 1 3.9717 0.3272 -0.0005 35 1 3.9562 3.0069 0.8905 36 1 3.9555 3.0080 -0.8895 37 1 5.9867 1.5851 -0.8904 38 1 5.9868 1.5844 0.8896 39 1 7.8744 1.3658 0.1397 40 1 9.0890 2.0788 -0.9502 41 1 9.0642 2.2186 2.1012 42 1 10.2173 1.3197 1.0840 43 1 13.0977 4.5547 2.7103 44 1 12.8389 4.5797 0.9499 45 1 11.1988 6.0254 3.0766 46 1 12.2137 6.7603 1.8089 47 1 11.2104 9.3947 2.0622 48 1 9.1095 4.8401 -0.9396 49 1 7.8775 5.5629 0.1271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177001752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -105.157245 kcal Electronic energy + Delta-G solvation = -30618.402572 eV Core-core repulsion = 26387.340009 eV Total energy + Delta-G solvation = -4231.062562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57227 -40.94924 -40.08325 -37.48757 -36.56406 -36.34337 -35.55981 -33.62679 -33.01106 -32.07327 -31.17515 -28.97735 -27.69285 -26.64739 -25.45863 -24.58153 -23.42134 -22.68400 -22.06248 -21.42062 -20.23175 -19.38981 -18.69244 -18.45350 -17.36726 -17.21788 -17.02149 -16.90190 -16.63663 -16.45517 -16.20648 -15.69671 -15.60146 -15.39682 -15.15086 -14.98295 -14.74087 -14.66494 -14.42408 -13.99309 -13.90394 -13.67166 -13.33228 -13.01887 -13.01206 -12.91005 -12.79620 -12.66368 -12.47598 -12.36534 -12.29096 -12.04940 -11.89915 -11.72324 -11.51401 -11.24438 -10.87581 -10.76589 -10.52777 -10.44485 -9.79743 -9.67525 -8.75506 -7.94025 -5.42818 1.41871 1.43865 1.52743 1.56120 1.62017 2.06134 2.13324 2.44884 2.84737 3.21290 3.32388 3.45656 3.62443 3.75000 3.91401 4.01447 4.09522 4.11299 4.20449 4.28677 4.41164 4.46063 4.48647 4.51628 4.56529 4.63342 4.67742 4.73306 4.85563 4.86008 4.89641 4.92559 5.01040 5.03022 5.13421 5.13870 5.34086 5.41259 5.45348 5.50449 5.53342 5.60240 6.03348 6.24415 6.34496 6.42839 7.02346 7.14658 7.16858 7.59971 7.70490 8.26057 9.12002 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.002531 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.534796 B =11061.826361 C =12476.024520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.734 5.734 3 C 0.690 3.310 4 O -0.647 6.647 5 N -0.725 5.725 6 C 0.159 3.841 7 C -0.130 4.130 8 C 0.507 3.493 9 O -0.595 6.595 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.117 4.117 13 C 0.079 3.921 14 H 0.057 0.943 15 O -0.392 6.392 16 C 0.054 3.946 17 C 0.145 3.855 18 N -0.605 5.605 19 C -0.259 4.259 20 H 0.074 0.926 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.293 1.293 25 H -0.288 1.288 26 H -0.264 1.264 27 C 0.132 3.868 28 H 0.003 0.997 29 C 0.137 3.863 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.042 0.958 33 H 0.418 0.582 34 H 0.420 0.580 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.050 0.950 45 H -0.006 1.006 46 H 0.069 0.931 47 H 0.251 0.749 48 H 0.071 0.929 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 -28.139 -5.183 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.390 5.390 3 C 0.390 3.610 4 O -0.529 6.529 5 N -0.382 5.382 6 C 0.033 3.967 7 C -0.169 4.169 8 C 0.296 3.704 9 O -0.475 6.475 10 N -0.342 5.342 11 C -0.013 4.013 12 C -0.156 4.156 13 C 0.020 3.980 14 H 0.075 0.925 15 O -0.311 6.311 16 C -0.024 4.024 17 C 0.019 3.981 18 N -0.330 5.330 19 C -0.389 4.389 20 H 0.092 0.908 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.220 1.220 25 H -0.214 1.214 26 H -0.189 1.189 27 C 0.025 3.975 28 H 0.021 0.979 29 C 0.014 3.986 30 H 0.062 0.938 31 H 0.136 0.864 32 H 0.061 0.939 33 H 0.255 0.745 34 H 0.258 0.742 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.069 0.931 45 H 0.012 0.988 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.968 -26.650 -5.005 28.560 hybrid contribution 0.462 1.667 -0.150 1.736 sum -8.506 -24.983 -5.156 26.890 Atomic orbital electron populations 1.21533 0.77559 1.04168 1.00961 1.44768 1.08154 1.06677 1.79442 1.16314 0.82418 0.84519 0.77790 1.90942 1.69170 1.32890 1.59857 1.44706 1.03894 1.09956 1.79665 1.20597 0.90137 0.84702 1.01283 1.21795 0.92019 0.94301 1.08817 1.21304 0.82023 0.92120 0.74927 1.90759 1.68607 1.36333 1.51846 1.48354 1.05584 1.07808 1.72503 1.22178 0.95104 0.84850 0.99189 1.21915 0.97159 0.96535 0.99973 1.22601 0.89061 0.95450 0.90929 0.92491 1.87746 1.43998 1.46903 1.52465 1.23145 0.91649 0.85923 1.01687 1.21315 0.89560 0.96232 0.90984 1.44309 1.27381 1.17647 1.43634 1.19424 1.35447 0.86459 0.97563 0.90809 1.25856 1.01903 0.99149 0.97602 1.70172 1.50222 1.19986 1.17754 0.85286 0.76816 0.79069 0.79464 1.22004 1.21373 1.18867 1.21469 0.91579 0.89171 0.95301 0.97917 1.21244 0.93288 0.86223 0.97875 0.93810 0.86445 0.93935 0.74483 0.74211 0.94040 0.93507 0.83581 0.84219 0.84105 0.88856 0.91387 0.86528 0.87398 0.93126 0.98780 0.91297 0.93982 0.91066 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 10.70 127.77 1.37 2.47 16 2 N -0.73 -8.51 5.72 -500.19 -2.86 -11.37 16 3 C 0.69 14.80 8.57 179.06 1.53 16.33 16 4 O -0.65 -22.20 16.34 -4.01 -0.07 -22.27 16 5 N -0.72 -10.53 5.56 -478.53 -2.66 -13.19 16 6 C 0.16 3.43 4.96 86.38 0.43 3.86 16 7 C -0.13 -1.80 4.16 29.85 0.12 -1.68 16 8 C 0.51 14.29 7.69 87.66 0.67 14.97 16 9 O -0.59 -24.56 15.38 -3.04 -0.05 -24.60 16 10 N -0.61 -16.59 2.98 -818.71 -2.44 -19.04 16 11 C 0.11 1.62 6.32 86.44 0.55 2.17 16 12 C -0.12 -2.38 5.82 30.65 0.18 -2.20 16 13 C 0.08 2.57 2.49 30.69 0.08 2.65 16 14 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 15 O -0.39 -14.20 10.48 -148.98 -1.56 -15.77 16 16 C 0.05 2.02 6.95 72.05 0.50 2.52 16 17 C 0.14 7.12 5.41 86.28 0.47 7.58 16 18 N -0.60 -30.89 3.03 -674.15 -2.04 -32.93 16 19 C -0.26 -14.34 8.86 84.03 0.74 -13.59 16 20 H 0.07 3.97 6.28 -2.91 -0.02 3.95 16 21 C -0.05 -2.82 4.99 84.86 0.42 -2.39 16 22 N -0.94 -56.41 11.16 21.65 0.24 -56.17 16 23 Si 0.97 45.92 29.58 68.60 2.03 47.95 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 27 C 0.13 5.61 3.02 45.10 0.14 5.75 16 28 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 29 C 0.14 5.36 4.49 86.24 0.39 5.75 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.42 1.16 8.84 -92.71 -0.82 0.34 16 34 H 0.42 1.73 8.49 -92.71 -0.79 0.94 16 35 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.15 0.78 7.96 -2.38 -0.02 0.76 16 38 H 0.14 0.96 7.66 -2.39 -0.02 0.94 16 39 H 0.14 0.67 5.91 -2.39 -0.01 0.66 16 40 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 45 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 46 H 0.07 3.72 6.23 -2.39 -0.01 3.71 16 47 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 48 H 0.07 2.76 7.33 -2.39 -0.02 2.74 16 49 H 0.05 2.64 6.81 -2.38 -0.02 2.62 16 Total: -1.00 -92.65 385.56 -2.45 -95.10 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -0.63 Total: 8.11 kcal Atomic # 6 Polarization: 36.59 SS G_CDS: 7.59 Total: 44.18 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -9.76 Total: -132.70 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: -1.67 Total: -62.63 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -92.65 -2.45 -95.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177001752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.059 kcal (2) G-P(sol) polarization free energy of solvation -92.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds