Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00079 * 2 1 4 4 O 1.21587 * 119.99806 * 0.27777 * 3 2 1 5 5 N 1.34774 * 120.00153 * 180.27923 * 3 2 1 6 6 C 1.46504 * 119.99832 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46979 * 180.02562 * 6 5 3 8 8 C 1.50703 * 109.47013 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99766 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99866 * 179.97438 * 8 7 6 11 11 C 1.46843 * 120.41207 * 359.72327 * 10 8 7 12 12 C 1.53791 * 109.01890 * 127.71633 * 11 10 8 13 13 C 1.52784 * 108.74812 * 54.06415 * 12 11 10 14 14 H 1.08996 * 108.96423 * 56.80383 * 13 12 11 15 15 O 1.42604 * 111.11209 * 177.34383 * 13 12 11 16 16 C 1.43146 * 113.62906 * 183.60824 * 15 13 12 17 17 C 1.53194 * 109.74368 * 298.31129 * 16 15 13 18 18 N 1.47350 * 108.79823 * 51.21071 * 17 16 15 19 19 C 1.36939 * 121.30350 * 129.78180 * 18 17 16 20 20 H 1.07994 * 120.00070 * 206.93835 * 19 18 17 21 21 C 1.38813 * 120.00061 * 26.94092 * 19 18 17 22 22 N 1.31626 * 120.00059 * 14.43206 * 21 19 18 23 23 Si 1.86796 * 120.00117 * 194.43452 * 21 19 18 24 24 H 1.48503 * 109.47193 * 59.99641 * 23 21 19 25 25 H 1.48504 * 109.47481 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46915 * 299.99734 * 23 21 19 27 27 C 1.46867 * 117.39360 * 309.75943 * 18 17 16 28 28 H 1.09004 * 110.20471 * 292.03294 * 27 18 17 29 29 C 1.47136 * 120.41149 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.46734 * 299.71633 * 1 2 3 31 31 H 1.08994 * 109.47537 * 59.72309 * 1 2 3 32 32 H 1.09007 * 109.46690 * 179.72360 * 1 2 3 33 33 H 0.97002 * 120.00081 * 180.28685 * 2 1 3 34 34 H 0.96993 * 120.00163 * 0.02562 * 5 3 2 35 35 H 1.09007 * 109.46967 * 299.99908 * 6 5 3 36 36 H 1.08996 * 109.47276 * 60.00074 * 6 5 3 37 37 H 1.08999 * 109.47208 * 300.00002 * 7 6 5 38 38 H 1.08996 * 109.47110 * 59.99907 * 7 6 5 39 39 H 1.09005 * 109.50317 * 247.69811 * 11 10 8 40 40 H 1.08998 * 109.50643 * 7.83374 * 11 10 8 41 41 H 1.08993 * 109.71883 * 294.21572 * 12 11 10 42 42 H 1.09001 * 109.50783 * 173.77931 * 12 11 10 43 43 H 1.09004 * 109.42816 * 58.39899 * 16 15 13 44 44 H 1.09000 * 109.42399 * 178.28326 * 16 15 13 45 45 H 1.09001 * 109.57787 * 171.00665 * 17 16 15 46 46 H 1.08996 * 109.58427 * 291.41723 * 17 16 15 47 47 H 0.96993 * 119.99813 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.72423 * 352.87313 * 29 10 8 49 49 H 1.08998 * 109.72391 * 113.50393 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 0.0051 5 7 3.4866 1.1672 -0.0057 6 6 4.2191 2.4360 -0.0051 7 6 5.7233 2.1564 -0.0129 8 6 6.4768 3.4616 -0.0117 9 8 5.8703 4.5118 -0.0057 10 7 7.8245 3.4616 -0.0173 11 6 8.5679 2.1952 -0.0184 12 6 9.5839 2.2116 -1.1728 13 6 10.4491 3.4646 -1.0478 14 1 10.9260 3.4694 -0.0677 15 8 11.4518 3.4997 -2.0612 16 6 12.3462 4.6113 -1.9452 17 6 11.5642 5.9213 -2.0839 18 7 10.4204 5.8921 -1.1555 19 6 10.1723 6.9316 -0.2992 20 1 9.6522 6.7532 0.6303 21 6 10.5893 8.2146 -0.6260 22 7 10.9612 8.4921 -1.8578 23 14 10.6228 9.5475 0.6823 24 1 11.5375 9.1414 1.7794 25 1 11.1034 10.8181 0.0824 26 1 9.2544 9.7424 1.2253 27 6 9.5565 4.7047 -1.1846 28 1 9.0091 4.6604 -2.1262 29 6 8.5693 4.7305 -0.0167 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5181 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.9500 -0.8400 -0.0042 34 1 3.9716 0.3272 -0.0102 35 1 3.9520 3.0101 -0.8924 36 1 3.9595 3.0050 0.8876 37 1 5.9907 1.5821 0.8740 38 1 5.9825 1.5877 -0.9058 39 1 9.0923 2.0802 0.9302 40 1 7.8738 1.3659 -0.1544 41 1 9.0566 2.2253 -2.1266 42 1 10.2149 1.3247 -1.1149 43 1 12.8358 4.5827 -0.9718 44 1 13.0990 4.5544 -2.7314 45 1 12.2131 6.7618 -1.8380 46 1 11.2019 6.0240 -3.1068 47 1 11.2530 9.3885 -2.0860 48 1 7.8769 5.5635 -0.1388 49 1 9.1123 4.8379 0.9223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177001753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = -73.298989 kcal Electronic energy + Delta-G solvation = -30613.164777 eV Core-core repulsion = 26383.483692 eV Total energy + Delta-G solvation = -4229.681085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.39348 -39.97995 -38.64972 -36.20120 -35.49634 -34.74430 -34.69956 -32.11127 -31.43090 -30.96742 -29.77500 -27.36661 -26.76711 -25.28935 -23.97871 -23.47069 -21.98575 -21.30581 -21.21479 -19.74258 -19.25712 -18.44604 -17.37061 -16.84731 -16.32717 -16.26623 -15.68552 -15.51677 -15.36479 -15.08474 -14.76104 -14.54927 -14.39257 -14.25820 -13.87366 -13.66455 -13.44371 -13.09780 -13.08456 -12.86460 -12.67438 -12.56117 -12.46946 -12.03010 -11.86890 -11.63942 -11.38024 -11.01754 -10.96115 -10.86795 -10.61339 -10.48488 -10.28882 -10.24797 -10.00005 -9.68564 -9.61783 -9.57570 -9.10448 -9.01920 -8.54751 -8.40907 -6.75336 -5.84508 -3.30443 2.38121 2.72256 3.00023 3.11783 3.37170 3.42399 3.43373 3.96881 4.20008 4.41882 4.51531 4.59963 4.81208 4.84932 4.85192 5.10865 5.16695 5.21738 5.26446 5.35145 5.36063 5.46969 5.48224 5.64648 5.70297 5.73280 5.83872 5.86597 5.89802 6.06776 6.11280 6.11518 6.20522 6.21747 6.30712 6.42926 6.59003 6.60954 6.66836 6.84128 7.11599 7.49820 7.53653 7.69580 7.72097 7.86368 8.28514 8.31947 8.36976 9.08991 9.72140 10.29192 11.23426 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.002530 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.210622 B =11064.598189 C =12484.614977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.584 6.584 5 N -0.747 5.747 6 C 0.152 3.848 7 C -0.152 4.152 8 C 0.516 3.484 9 O -0.531 6.531 10 N -0.611 5.611 11 C 0.111 3.889 12 C -0.125 4.125 13 C 0.076 3.924 14 H 0.052 0.948 15 O -0.390 6.390 16 C 0.039 3.961 17 C 0.142 3.858 18 N -0.587 5.587 19 C -0.259 4.259 20 H 0.072 0.928 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.905 3.095 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.137 3.863 28 H 0.036 0.964 29 C 0.123 3.877 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.027 0.973 47 H 0.256 0.744 48 H 0.103 0.897 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 -22.910 3.730 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.461 6.461 5 N -0.403 5.403 6 C 0.028 3.972 7 C -0.192 4.192 8 C 0.303 3.697 9 O -0.407 6.407 10 N -0.345 5.345 11 C -0.012 4.012 12 C -0.164 4.164 13 C 0.017 3.983 14 H 0.070 0.930 15 O -0.309 6.309 16 C -0.039 4.039 17 C 0.016 3.984 18 N -0.312 5.312 19 C -0.388 4.388 20 H 0.090 0.910 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.734 3.266 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.206 1.206 27 C 0.029 3.971 28 H 0.054 0.946 29 C 0.002 3.998 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.046 0.954 47 H 0.066 0.934 48 H 0.121 0.879 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.658 -21.254 3.538 23.612 hybrid contribution 0.712 0.067 0.666 0.978 sum -8.946 -21.187 4.204 23.379 Atomic orbital electron populations 1.21389 0.78141 1.01860 1.02401 1.44917 1.07790 1.07071 1.81152 1.15944 0.81739 0.84299 0.78018 1.90975 1.67765 1.30286 1.57096 1.45093 1.04758 1.09801 1.80624 1.20918 0.88018 0.84002 1.04301 1.21832 0.95290 0.97334 1.04766 1.20209 0.82130 0.90726 0.76662 1.90771 1.67373 1.33425 1.49169 1.48279 1.05367 1.07916 1.72976 1.21800 0.94609 0.85881 0.98898 1.21929 0.97198 0.98130 0.99103 1.22419 0.89649 0.95114 0.91162 0.93021 1.87736 1.43552 1.47700 1.51888 1.23341 0.91960 0.88449 1.00102 1.21467 0.89599 0.94312 0.92993 1.44018 1.26346 1.16463 1.44350 1.19096 1.36149 0.85826 0.97698 0.91032 1.25078 1.01289 0.97062 0.95857 1.69994 1.48019 1.20249 1.16361 0.86327 0.78190 0.81059 0.80987 1.20957 1.21534 1.20612 1.21273 0.90951 0.88598 0.96238 0.94608 1.21778 0.94539 0.84741 0.98789 0.92361 0.92343 0.90729 0.77079 0.77230 0.90443 0.90497 0.88351 0.88221 0.91072 0.89600 0.90806 0.90285 0.94120 0.90077 0.88446 0.95444 0.93403 0.87892 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.66 10.70 59.85 0.64 1.30 16 2 N -0.75 -5.28 5.72 -72.07 -0.41 -5.69 16 3 C 0.70 7.88 8.57 -86.92 -0.74 7.14 16 4 O -0.58 -9.68 16.34 5.29 0.09 -9.60 16 5 N -0.75 -6.38 5.56 -65.22 -0.36 -6.75 16 6 C 0.15 1.71 4.96 -4.04 -0.02 1.69 16 7 C -0.15 -1.36 4.15 -27.88 -0.12 -1.48 16 8 C 0.52 7.55 7.69 -10.98 -0.08 7.47 16 9 O -0.53 -10.38 15.38 5.56 0.09 -10.30 16 10 N -0.61 -8.87 2.98 -172.45 -0.51 -9.39 16 11 C 0.11 1.15 6.34 -3.44 -0.02 1.12 16 12 C -0.12 -1.56 5.84 -26.43 -0.15 -1.71 16 13 C 0.08 1.32 2.47 -26.63 -0.07 1.26 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 15 O -0.39 -7.45 10.49 -35.23 -0.37 -7.82 16 16 C 0.04 0.76 6.96 37.26 0.26 1.02 16 17 C 0.14 3.35 5.42 -3.48 -0.02 3.33 16 18 N -0.59 -14.43 3.04 -164.38 -0.50 -14.93 16 19 C -0.26 -6.88 8.89 -15.06 -0.13 -7.01 16 20 H 0.07 1.85 6.26 -52.49 -0.33 1.52 16 21 C 0.01 0.17 5.01 -17.43 -0.09 0.08 16 22 N -0.90 -25.85 11.06 55.49 0.61 -25.24 16 23 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.14 2.85 3.02 -67.55 -0.20 2.65 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 C 0.12 2.34 4.48 -3.72 -0.02 2.32 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.40 1.34 8.84 -40.82 -0.36 0.98 16 34 H 0.39 1.79 8.49 -40.82 -0.35 1.44 16 35 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.10 0.61 7.94 -51.93 -0.41 0.20 16 38 H 0.10 0.67 7.67 -51.93 -0.40 0.27 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.56 5.90 -51.93 -0.31 0.26 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.10 2.51 6.16 -51.93 -0.32 2.19 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.10 2.31 6.80 -51.93 -0.35 1.96 16 49 H 0.07 1.38 7.38 -51.93 -0.38 1.00 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -36.74 385.49 -9.19 -45.93 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.84 Total: 2.20 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: -0.77 Total: 19.18 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -1.17 Total: -61.99 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.20 Total: -27.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.74 -9.19 -45.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177001753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.369 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds