Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48501 * 109.46798 * 270.00425 * 3 2 1 5 5 H 1.48504 * 109.47177 * 29.99887 * 3 2 1 6 6 H 1.48494 * 109.47346 * 149.99883 * 3 2 1 7 7 C 1.38800 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00512 * 359.97438 * 7 2 1 9 9 S 1.76200 * 119.99581 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99954 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47270 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99834 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00122 * 180.02562 * 11 10 9 14 14 C 1.47024 * 125.64574 * 359.95470 * 13 11 10 15 15 C 1.54329 * 107.26959 * 181.09707 * 14 13 11 16 16 C 1.55153 * 102.94008 * 22.19455 * 15 14 13 17 17 H 1.08998 * 111.04447 * 82.58744 * 16 15 14 18 18 N 1.46905 * 111.00374 * 206.42359 * 16 15 14 19 19 C 1.46893 * 111.00191 * 198.65076 * 18 16 15 20 20 C 1.52998 * 109.47185 * 180.02562 * 19 18 16 21 21 C 1.54071 * 108.79707 * 297.92886 * 20 19 18 22 22 C 1.54063 * 112.81676 * 197.56146 * 21 20 19 23 23 C 1.50476 * 112.49675 * 318.27911 * 22 21 20 24 24 C 1.54245 * 108.51279 * 94.15799 * 23 22 21 25 25 C 1.45537 * 112.40728 * 280.00235 * 24 23 22 26 26 C 1.50474 * 108.87880 * 174.99775 * 20 19 18 27 27 C 1.47414 * 125.65053 * 179.97438 * 13 11 10 28 28 H 0.96998 * 120.00288 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47536 * 59.99959 * 10 9 7 30 30 H 1.09004 * 109.47117 * 300.00033 * 10 9 7 31 31 H 1.09000 * 109.88334 * 300.51329 * 14 13 11 32 32 H 1.09002 * 109.88615 * 61.52485 * 14 13 11 33 33 H 1.08998 * 110.71956 * 263.82929 * 15 14 13 34 34 H 1.08994 * 110.71939 * 140.55404 * 15 14 13 35 35 H 1.00895 * 110.99860 * 322.60664 * 18 16 15 36 36 H 1.08999 * 109.47506 * 59.99906 * 19 18 16 37 37 H 1.09009 * 109.47115 * 299.99939 * 19 18 16 38 38 H 1.09003 * 108.85642 * 56.44227 * 20 19 18 39 39 H 1.08994 * 108.81493 * 76.69459 * 21 20 19 40 40 H 1.09007 * 108.81008 * 318.41886 * 21 20 19 41 41 H 1.09002 * 108.87867 * 197.50178 * 22 21 20 42 42 H 1.09000 * 108.87817 * 79.05963 * 22 21 20 43 43 H 1.08996 * 109.62739 * 213.86202 * 23 22 21 44 44 H 1.08995 * 109.62817 * 334.44920 * 23 22 21 45 45 H 1.09006 * 108.89114 * 40.75619 * 24 23 22 46 46 H 1.09001 * 108.89095 * 159.24371 * 24 23 22 47 47 H 1.08998 * 108.89158 * 182.69134 * 25 24 23 48 48 H 1.08997 * 108.89737 * 301.27941 * 25 24 23 49 49 H 1.09004 * 109.62563 * 95.10973 * 26 20 19 50 50 H 1.09002 * 109.78421 * 334.63184 * 26 20 19 51 51 H 1.08999 * 110.36477 * 36.99746 * 27 13 11 52 52 H 1.09000 * 110.37002 * 274.67712 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3440 -2.2963 -0.0024 13 7 6.0457 -4.4947 -0.0041 14 6 5.2273 -5.7161 -0.0047 15 6 6.1964 -6.9169 0.0218 16 6 7.4953 -6.3023 0.6070 17 1 7.4528 -6.2608 1.6954 18 7 8.6791 -7.0468 0.1572 19 6 9.8337 -6.7726 1.0229 20 6 11.0447 -7.5633 0.5236 21 6 10.7262 -9.0681 0.6128 22 6 11.9877 -9.9504 0.5523 23 6 12.9775 -9.4701 -0.4743 24 6 14.0015 -8.5523 0.2245 25 6 13.4903 -7.2050 0.4287 26 6 12.2477 -7.1798 1.3421 27 6 7.4689 -4.8792 -0.0049 28 1 -0.4850 0.8400 0.0004 29 1 3.6433 -3.4310 -0.8926 30 1 3.6440 -3.4322 0.8873 31 1 4.5892 -5.7351 0.8787 32 1 4.6144 -5.7512 -0.9054 33 1 6.3688 -7.2956 -0.9856 34 1 5.8160 -7.7051 0.6715 35 1 8.4882 -8.0364 0.1117 36 1 9.6006 -7.0713 2.0449 37 1 10.0611 -5.7068 0.9987 38 1 11.2299 -7.3032 -0.5186 39 1 10.0685 -9.3378 -0.2134 40 1 10.2061 -9.2623 1.5510 41 1 11.6930 -10.9709 0.3075 42 1 12.4664 -9.9490 1.5315 43 1 13.4920 -10.3242 -0.9146 44 1 12.4565 -8.9119 -1.2522 45 1 14.2584 -8.9828 1.1925 46 1 14.9025 -8.4992 -0.3865 47 1 14.2728 -6.5953 0.8803 48 1 13.2246 -6.7780 -0.5383 49 1 12.3780 -7.8917 2.1572 50 1 12.1128 -6.1777 1.7492 51 1 8.0481 -4.1909 0.6106 52 1 7.8566 -4.8967 -1.0235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181107243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -78.505782 kcal Electronic energy + Delta-G solvation = -27063.807569 eV Core-core repulsion = 23380.193916 eV Total energy + Delta-G solvation = -3683.613654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14727 -40.14939 -38.79015 -36.38151 -34.68705 -33.65291 -33.12302 -31.68197 -30.87062 -28.82950 -27.85670 -26.69132 -25.64794 -24.32105 -23.09326 -21.80609 -21.32980 -20.76678 -19.84385 -19.62357 -18.16275 -17.72947 -17.14724 -16.80107 -16.61432 -16.39020 -16.12361 -15.70780 -15.63537 -15.10201 -14.93003 -14.87484 -14.68596 -14.61764 -14.26705 -13.90421 -13.82698 -13.66154 -13.44684 -13.35265 -13.18625 -13.02743 -12.85266 -12.77008 -12.69119 -12.50401 -12.04362 -11.88506 -11.87103 -11.58995 -11.47011 -11.28575 -11.18324 -11.15519 -11.07916 -11.05788 -10.93498 -10.56134 -9.77260 -9.45007 -9.02981 -8.52739 -6.24346 0.93897 1.30406 1.43777 1.47570 1.51798 2.00697 2.24090 2.66014 2.85388 3.12433 3.32701 3.64548 3.73507 3.76595 3.81257 3.93239 4.06023 4.15382 4.20136 4.28617 4.29776 4.37090 4.37970 4.40964 4.46409 4.52301 4.53854 4.62831 4.68070 4.78962 4.79394 4.88471 4.92865 4.94910 4.95627 5.10602 5.18348 5.18877 5.24173 5.29177 5.32899 5.36934 5.40806 5.41411 5.51815 5.60651 5.65556 5.69655 6.03203 6.09936 6.30786 6.49018 6.92288 7.01660 8.59540 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029935 B = 0.001739 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.131393 B =16096.117542 C =16818.794477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.239 1.239 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.101 4.101 11 C 0.546 3.454 12 O -0.566 6.566 13 N -0.616 5.616 14 C 0.090 3.910 15 C -0.116 4.116 16 C 0.083 3.917 17 H 0.062 0.938 18 N -0.677 5.677 19 C 0.062 3.938 20 C -0.076 4.076 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.111 4.111 27 C 0.117 3.883 28 H 0.277 0.723 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.357 0.643 36 H 0.035 0.965 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.059 0.941 51 H 0.053 0.947 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.593 -26.171 2.113 36.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.163 1.163 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.252 4.252 11 C 0.334 3.666 12 O -0.445 6.445 13 N -0.351 5.351 14 C -0.032 4.032 15 C -0.154 4.154 16 C -0.028 4.028 17 H 0.080 0.920 18 N -0.311 5.311 19 C -0.067 4.067 20 C -0.095 4.095 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.007 4.007 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.178 0.822 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 26.692 -24.193 1.649 36.063 hybrid contribution -1.399 -0.415 0.705 1.620 sum 25.294 -24.609 2.354 35.368 Atomic orbital electron populations 1.70006 1.07201 1.29042 1.48997 1.25530 0.95272 1.02144 0.92836 0.85889 0.80656 0.79719 0.80247 1.18681 1.18121 1.16270 1.22430 0.89986 0.96785 1.58445 0.91833 1.84740 1.06752 1.05954 1.97578 1.23193 0.95213 0.99620 1.07132 1.19702 0.89572 0.81774 0.75576 1.90680 1.59519 1.43080 1.51238 1.48359 1.08849 1.04932 1.72935 1.22359 0.94715 0.82768 1.03376 1.22781 0.92372 0.96327 1.03925 1.22500 0.90884 0.92086 0.97308 0.91992 1.60265 1.03600 1.13902 1.53313 1.22234 0.90565 0.99820 0.94051 1.20905 0.93402 0.94916 1.00235 1.21944 0.97687 0.93216 1.01863 1.21304 0.95781 0.98894 0.99341 1.21337 0.96861 0.99117 0.98215 1.20482 0.98486 0.95726 1.00739 1.20454 0.97652 0.97642 0.99692 1.21351 0.94097 1.01300 0.98197 1.22222 0.80930 0.96148 1.01358 0.91312 0.87093 0.87021 0.90136 0.90095 0.88503 0.87137 0.82156 0.94655 0.92373 0.91323 0.91560 0.92225 0.91963 0.92286 0.91770 0.92078 0.92123 0.92389 0.92359 0.92705 0.91376 0.92267 0.92858 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.84 13.97 21.65 0.30 -55.53 16 2 C 0.05 2.83 5.50 84.86 0.47 3.30 16 3 Si 0.91 45.50 27.74 68.60 1.90 47.41 16 4 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.96 6.74 99.48 0.67 -11.29 16 7 C -0.53 -31.17 10.04 67.95 0.68 -30.49 16 8 H 0.06 3.93 8.03 -2.91 -0.02 3.90 16 9 S -0.18 -9.20 18.55 -56.49 -1.05 -10.25 16 10 C -0.10 -4.01 5.35 71.24 0.38 -3.63 16 11 C 0.55 20.65 7.87 87.66 0.69 21.34 16 12 O -0.57 -26.25 16.12 -3.02 -0.05 -26.30 16 13 N -0.62 -16.98 3.33 -811.76 -2.70 -19.68 16 14 C 0.09 1.64 6.49 86.73 0.56 2.21 16 15 C -0.12 -1.34 6.42 31.78 0.20 -1.13 16 16 C 0.08 1.26 3.32 46.31 0.15 1.42 16 17 H 0.06 0.97 7.92 -2.39 -0.02 0.95 16 18 N -0.68 -8.46 6.37 -484.38 -3.08 -11.54 16 19 C 0.06 0.80 4.75 86.30 0.41 1.20 16 20 C -0.08 -0.81 1.91 -11.25 -0.02 -0.84 16 21 C -0.11 -0.91 4.48 31.32 0.14 -0.77 16 22 C -0.12 -0.95 5.31 30.14 0.16 -0.79 16 23 C -0.12 -1.06 5.61 30.20 0.17 -0.89 16 24 C -0.12 -1.10 5.26 28.74 0.15 -0.94 16 25 C -0.12 -1.25 5.26 28.73 0.15 -1.10 16 26 C -0.11 -1.20 5.12 30.20 0.15 -1.05 16 27 C 0.12 2.79 6.56 86.86 0.57 3.36 16 28 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 30 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.36 3.12 7.00 -89.70 -0.63 2.49 16 36 H 0.04 0.43 8.02 -2.39 -0.02 0.41 16 37 H 0.06 0.95 7.96 -2.38 -0.02 0.93 16 38 H 0.07 0.92 6.63 -2.39 -0.02 0.91 16 39 H 0.07 0.52 7.41 -2.39 -0.02 0.50 16 40 H 0.06 0.47 7.92 -2.38 -0.02 0.45 16 41 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.06 0.50 6.63 -2.39 -0.02 0.48 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.64 6.98 -2.39 -0.02 0.63 16 45 H 0.06 0.54 7.47 -2.38 -0.02 0.53 16 46 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.05 0.67 7.46 -2.39 -0.02 0.65 16 49 H 0.07 0.69 6.98 -2.38 -0.02 0.67 16 50 H 0.06 0.71 7.60 -2.39 -0.02 0.69 16 51 H 0.05 1.49 8.04 -2.39 -0.02 1.47 16 52 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -72.99 406.18 0.57 -72.42 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.22 Total: 12.27 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.02 Total: -8.79 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -5.48 Total: -86.76 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.05 Total: -10.25 kcal Total: -72.99 0.57 -72.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.081 kcal (2) G-P(sol) polarization free energy of solvation -72.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds