Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46508 * 119.99530 * 2 1 4 4 C 1.34770 * 120.00352 * 180.02562 * 2 1 3 5 5 O 1.21279 * 119.99834 * 359.97438 * 4 2 1 6 6 C 1.50700 * 119.99902 * 179.97438 * 4 2 1 7 7 C 1.50704 * 109.46888 * 179.97438 * 6 4 2 8 8 O 1.21278 * 120.00182 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99771 * 179.97438 * 7 6 4 10 10 C 1.47020 * 125.65043 * 359.96040 * 9 7 6 11 11 C 1.54366 * 107.28976 * 178.94016 * 10 9 7 12 12 C 1.55157 * 102.92392 * 337.86365 * 11 10 9 13 13 H 1.08996 * 111.00484 * 277.36153 * 12 11 10 14 14 N 1.46892 * 111.00742 * 153.54291 * 12 11 10 15 15 C 1.46903 * 111.00067 * 60.53373 * 14 12 11 16 16 C 1.46902 * 111.00147 * 184.48558 * 14 12 11 17 17 C 1.50699 * 109.47373 * 170.00188 * 16 14 12 18 18 O 1.21293 * 119.99838 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00384 * 179.97438 * 17 16 14 20 20 C 1.37095 * 120.00421 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99893 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00441 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00201 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99689 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46940 * 89.99755 * 24 22 20 26 26 H 1.48497 * 109.47077 * 209.99509 * 24 22 20 27 27 H 1.48496 * 109.47184 * 329.99877 * 24 22 20 28 28 C 1.47423 * 125.64773 * 180.02562 * 9 7 6 29 29 H 1.09004 * 109.46847 * 270.00088 * 1 2 3 30 30 H 1.08992 * 109.47629 * 30.00256 * 1 2 3 31 31 H 1.09004 * 109.46693 * 150.00176 * 1 2 3 32 32 H 1.08994 * 109.46773 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46648 * 299.99846 * 3 2 1 34 34 H 1.08991 * 109.46883 * 60.00057 * 3 2 1 35 35 H 1.08996 * 109.47250 * 60.00414 * 6 4 2 36 36 H 1.08995 * 109.47326 * 299.99714 * 6 4 2 37 37 H 1.09001 * 109.88351 * 298.39281 * 10 9 7 38 38 H 1.08999 * 109.88291 * 59.55801 * 10 9 7 39 39 H 1.08998 * 110.75863 * 219.49427 * 11 10 9 40 40 H 1.08994 * 110.70501 * 96.20745 * 11 10 9 41 41 H 1.08996 * 109.47342 * 178.47818 * 15 14 12 42 42 H 1.09005 * 109.46922 * 58.47720 * 15 14 12 43 43 H 1.08995 * 109.47042 * 298.47855 * 15 14 12 44 44 H 1.09000 * 109.46986 * 290.00273 * 16 14 12 45 45 H 1.08995 * 109.46970 * 50.00243 * 16 14 12 46 46 H 0.97001 * 119.99790 * 0.02562 * 19 17 16 47 47 H 0.97005 * 119.99722 * 180.02562 * 23 22 20 48 48 H 1.08997 * 110.36767 * 85.25501 * 28 9 7 49 49 H 1.09003 * 110.46068 * 322.98329 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5326 -2.2174 -0.0005 6 6 3.6459 -1.1670 -0.0011 7 6 4.1483 -2.5878 -0.0010 8 8 3.3603 -3.5097 -0.0009 9 7 5.4734 -2.8340 -0.0020 10 6 6.5341 -1.8159 -0.0040 11 6 7.8856 -2.5614 0.0228 12 6 7.5059 -3.9472 0.6081 13 1 7.4585 -3.9119 1.6965 14 7 8.4443 -4.9839 0.1582 15 6 9.8135 -4.6805 0.5955 16 6 8.0248 -6.3122 0.6249 17 6 8.8597 -7.3690 -0.0512 18 8 9.7199 -7.0474 -0.8435 19 7 8.6513 -8.6715 0.2253 20 6 9.4105 -9.6330 -0.3901 21 1 10.1759 -9.3467 -1.0962 22 6 9.1960 -10.9758 -0.1046 23 7 9.9240 -11.8974 -0.6941 24 14 7.8726 -11.4711 1.1173 25 1 6.5880 -11.6743 0.4004 26 1 8.2685 -12.7338 1.7911 27 1 7.7091 -10.3989 2.1316 28 6 6.0994 -4.1688 -0.0025 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 3.2690 1.0697 -0.0005 33 1 1.9340 1.8403 -0.8900 34 1 1.9341 1.8403 0.8899 35 1 4.0096 -0.6534 0.8889 36 1 4.0089 -0.6530 -0.8911 37 1 6.4632 -1.2085 -0.9063 38 1 6.4428 -1.1836 0.8791 39 1 8.5961 -2.0500 0.6722 40 1 8.2883 -2.6656 -0.9847 41 1 10.4832 -5.4774 0.2723 42 1 9.8389 -4.6030 1.6825 43 1 10.1342 -3.7359 0.1564 44 1 8.1604 -6.3775 1.7044 45 1 6.9741 -6.4680 0.3806 46 1 7.9636 -8.9287 0.8593 47 1 9.7740 -12.8348 -0.4950 48 1 6.1831 -4.5480 -1.0209 49 1 5.5233 -4.8600 0.6127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192723107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -65.884574 kcal Electronic energy + Delta-G solvation = -29774.571903 eV Core-core repulsion = 25545.212332 eV Total energy + Delta-G solvation = -4229.359572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78302 -39.74562 -38.69293 -37.63698 -35.87134 -35.44955 -33.86509 -31.94221 -31.65611 -30.71369 -29.09781 -28.11392 -28.01750 -26.22933 -24.91429 -23.94650 -22.88674 -20.52930 -20.21750 -19.33596 -18.99399 -18.21768 -17.97978 -17.01052 -16.67748 -16.47327 -16.18409 -15.76728 -15.44565 -14.97804 -14.79992 -14.56589 -14.48626 -14.04726 -13.71338 -13.63364 -13.55709 -13.14926 -13.09720 -13.02334 -13.00833 -12.84592 -12.67337 -12.45225 -12.40240 -12.21606 -12.08250 -11.81344 -11.49692 -11.37315 -11.13775 -11.03281 -10.84722 -10.56406 -10.32531 -9.95341 -9.63085 -9.51447 -9.11224 -8.80593 -8.58723 -8.16296 -8.02101 -6.28986 -3.80229 2.27354 2.32705 2.52417 2.88224 3.05875 3.11083 3.18660 3.74801 3.85051 3.98824 4.09000 4.13161 4.38668 4.46596 4.54341 4.65221 4.74740 4.78096 4.80284 4.85916 4.91042 5.06341 5.10408 5.12810 5.16035 5.23771 5.26621 5.43375 5.47763 5.56876 5.61937 5.71112 5.79998 5.82934 5.84708 5.93168 5.98903 6.01793 6.07581 6.45473 6.87291 7.08252 7.22696 7.31811 7.60369 7.83143 8.07504 8.16472 8.62183 8.97287 9.44764 9.85199 10.83982 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.002157 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.075717 B =12978.962247 C =14358.278955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.629 5.629 3 C 0.075 3.925 4 C 0.511 3.489 5 O -0.488 6.488 6 C -0.158 4.158 7 C 0.527 3.473 8 O -0.493 6.493 9 N -0.622 5.622 10 C 0.102 3.898 11 C -0.123 4.123 12 C 0.068 3.932 13 H 0.055 0.945 14 N -0.507 5.507 15 C 0.023 3.977 16 C 0.039 3.961 17 C 0.454 3.546 18 O -0.559 6.559 19 N -0.590 5.590 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.878 3.122 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.114 3.886 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.015 0.985 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.084 0.916 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.767 31.034 5.661 34.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.367 5.367 3 C -0.069 4.069 4 C 0.296 3.704 5 O -0.360 6.360 6 C -0.201 4.201 7 C 0.312 3.688 8 O -0.365 6.365 9 N -0.359 5.359 10 C -0.022 4.022 11 C -0.161 4.161 12 C -0.041 4.041 13 H 0.073 0.927 14 N -0.231 5.231 15 C -0.125 4.125 16 C -0.093 4.093 17 C 0.239 3.761 18 O -0.441 6.441 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.705 3.295 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.008 4.008 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.034 0.966 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.011 29.916 4.571 32.942 hybrid contribution -0.891 -0.279 1.905 2.122 sum -13.902 29.637 6.476 33.370 Atomic orbital electron populations 1.21596 0.78873 1.03173 1.01896 1.47763 1.07222 1.06131 1.75536 1.21863 0.97344 0.85464 1.02195 1.20064 0.89228 0.83599 0.77486 1.90883 1.69250 1.30065 1.45774 1.21592 0.94770 0.97433 1.06319 1.19562 0.80697 0.90634 0.77859 1.90890 1.53353 1.45473 1.46734 1.48417 1.04663 1.08338 1.74474 1.22080 0.87156 0.91455 1.01507 1.22699 0.95551 0.94316 1.03498 1.22797 0.92088 0.92192 0.97054 0.92695 1.61593 1.02077 0.99826 1.59596 1.22549 0.89885 1.03458 0.96604 1.21962 1.00287 0.89424 0.97599 1.19570 0.87246 0.82779 0.86479 1.90524 1.35599 1.80787 1.37230 1.42215 1.34439 1.05742 1.40580 1.19416 1.15968 0.85034 1.22838 0.86239 1.25033 0.97731 0.95504 0.97867 1.69621 1.39250 1.00926 1.42316 0.86690 0.82369 0.79065 0.81391 1.19521 1.20202 1.19522 1.22248 0.91759 0.84281 1.02559 0.92776 0.91253 0.90410 0.90292 0.91850 0.91896 0.86232 0.86136 0.91102 0.91459 0.89990 0.88910 0.88346 0.96638 0.91758 0.93188 0.89133 0.79700 0.91630 0.89805 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.48 59.85 0.63 1.18 16 2 N -0.63 -4.49 3.27 -189.52 -0.62 -5.11 16 3 C 0.07 0.20 10.60 59.85 0.63 0.84 16 4 C 0.51 5.45 7.67 -10.99 -0.08 5.37 16 5 O -0.49 -7.97 13.76 -18.96 -0.26 -8.23 16 6 C -0.16 -1.18 3.69 -29.03 -0.11 -1.29 16 7 C 0.53 6.53 7.84 -10.98 -0.09 6.45 16 8 O -0.49 -8.86 14.44 -18.96 -0.27 -9.14 16 9 N -0.62 -6.63 3.33 -170.48 -0.57 -7.20 16 10 C 0.10 0.68 6.49 -3.04 -0.02 0.66 16 11 C -0.12 -1.01 5.32 -24.87 -0.13 -1.14 16 12 C 0.07 0.78 2.71 -65.56 -0.18 0.60 16 13 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 14 N -0.51 -7.63 4.40 -233.74 -1.03 -8.66 16 15 C 0.02 0.33 8.97 60.07 0.54 0.86 16 16 C 0.04 0.65 5.33 -4.98 -0.03 0.62 16 17 C 0.45 10.24 7.46 -10.99 -0.08 10.16 16 18 O -0.56 -14.63 13.92 5.55 0.08 -14.56 16 19 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 20 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 23 N -0.88 -25.94 13.96 55.50 0.77 -25.17 16 24 Si 0.88 19.79 27.74 -169.99 -4.71 15.08 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 28 C 0.11 1.44 5.41 -2.52 -0.01 1.43 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 31 H 0.08 0.66 7.42 -51.93 -0.39 0.27 16 32 H 0.08 0.09 5.77 -51.93 -0.30 -0.21 16 33 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.12 0.51 7.79 -51.93 -0.40 0.10 16 36 H 0.12 0.53 7.79 -51.93 -0.40 0.13 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.80 5.81 -51.93 -0.30 1.50 16 42 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.06 0.78 7.22 -51.93 -0.37 0.40 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.09 1.40 6.75 -51.93 -0.35 1.05 16 46 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.08 1.07 7.68 -51.93 -0.40 0.67 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -39.52 393.51 -7.69 -47.21 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.78 Total: 6.06 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 0.82 Total: 18.02 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -1.50 Total: -60.38 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.46 Total: -31.93 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.71 Total: 15.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.52 -7.69 -47.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192723107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.671 kcal (2) G-P(sol) polarization free energy of solvation -39.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds