Wall clock time and date at job start Sat Apr 11 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46508 * 119.99530 * 2 1 4 4 C 1.34770 * 120.00352 * 180.02562 * 2 1 3 5 5 O 1.21279 * 119.99834 * 359.97438 * 4 2 1 6 6 C 1.50700 * 119.99902 * 179.97438 * 4 2 1 7 7 C 1.50704 * 109.46888 * 179.97438 * 6 4 2 8 8 O 1.21278 * 120.00182 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99771 * 179.97438 * 7 6 4 10 10 C 1.47020 * 125.65043 * 359.96040 * 9 7 6 11 11 C 1.54366 * 107.28976 * 178.94016 * 10 9 7 12 12 C 1.55157 * 102.92392 * 337.86365 * 11 10 9 13 13 H 1.08996 * 111.00484 * 277.36153 * 12 11 10 14 14 N 1.46892 * 111.00742 * 153.54291 * 12 11 10 15 15 C 1.46903 * 111.00067 * 60.53373 * 14 12 11 16 16 C 1.46902 * 111.00147 * 184.48558 * 14 12 11 17 17 C 1.50699 * 109.47373 * 170.00188 * 16 14 12 18 18 O 1.21293 * 119.99838 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00384 * 179.97438 * 17 16 14 20 20 C 1.37095 * 120.00421 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99893 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00441 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00201 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99689 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46940 * 89.99755 * 24 22 20 26 26 H 1.48497 * 109.47077 * 209.99509 * 24 22 20 27 27 H 1.48496 * 109.47184 * 329.99877 * 24 22 20 28 28 C 1.47423 * 125.64773 * 180.02562 * 9 7 6 29 29 H 1.09004 * 109.46847 * 270.00088 * 1 2 3 30 30 H 1.08992 * 109.47629 * 30.00256 * 1 2 3 31 31 H 1.09004 * 109.46693 * 150.00176 * 1 2 3 32 32 H 1.08994 * 109.46773 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46648 * 299.99846 * 3 2 1 34 34 H 1.08991 * 109.46883 * 60.00057 * 3 2 1 35 35 H 1.08996 * 109.47250 * 60.00414 * 6 4 2 36 36 H 1.08995 * 109.47326 * 299.99714 * 6 4 2 37 37 H 1.09001 * 109.88351 * 298.39281 * 10 9 7 38 38 H 1.08999 * 109.88291 * 59.55801 * 10 9 7 39 39 H 1.08998 * 110.75863 * 219.49427 * 11 10 9 40 40 H 1.08994 * 110.70501 * 96.20745 * 11 10 9 41 41 H 1.08996 * 109.47342 * 178.47818 * 15 14 12 42 42 H 1.09005 * 109.46922 * 58.47720 * 15 14 12 43 43 H 1.08995 * 109.47042 * 298.47855 * 15 14 12 44 44 H 1.09000 * 109.46986 * 290.00273 * 16 14 12 45 45 H 1.08995 * 109.46970 * 50.00243 * 16 14 12 46 46 H 0.97001 * 119.99790 * 0.02562 * 19 17 16 47 47 H 0.97005 * 119.99722 * 180.02562 * 23 22 20 48 48 H 1.08997 * 110.36767 * 85.25501 * 28 9 7 49 49 H 1.09003 * 110.46068 * 322.98329 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5326 -2.2174 -0.0005 6 6 3.6459 -1.1670 -0.0011 7 6 4.1483 -2.5878 -0.0010 8 8 3.3603 -3.5097 -0.0009 9 7 5.4734 -2.8340 -0.0020 10 6 6.5341 -1.8159 -0.0040 11 6 7.8856 -2.5614 0.0228 12 6 7.5059 -3.9472 0.6081 13 1 7.4585 -3.9119 1.6965 14 7 8.4443 -4.9839 0.1582 15 6 9.8135 -4.6805 0.5955 16 6 8.0248 -6.3122 0.6249 17 6 8.8597 -7.3690 -0.0512 18 8 9.7199 -7.0474 -0.8435 19 7 8.6513 -8.6715 0.2253 20 6 9.4105 -9.6330 -0.3901 21 1 10.1759 -9.3467 -1.0962 22 6 9.1960 -10.9758 -0.1046 23 7 9.9240 -11.8974 -0.6941 24 14 7.8726 -11.4711 1.1173 25 1 6.5880 -11.6743 0.4004 26 1 8.2685 -12.7338 1.7911 27 1 7.7091 -10.3989 2.1316 28 6 6.0994 -4.1688 -0.0025 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 3.2690 1.0697 -0.0005 33 1 1.9340 1.8403 -0.8900 34 1 1.9341 1.8403 0.8899 35 1 4.0096 -0.6534 0.8889 36 1 4.0089 -0.6530 -0.8911 37 1 6.4632 -1.2085 -0.9063 38 1 6.4428 -1.1836 0.8791 39 1 8.5961 -2.0500 0.6722 40 1 8.2883 -2.6656 -0.9847 41 1 10.4832 -5.4774 0.2723 42 1 9.8389 -4.6030 1.6825 43 1 10.1342 -3.7359 0.1564 44 1 8.1604 -6.3775 1.7044 45 1 6.9741 -6.4680 0.3806 46 1 7.9636 -8.9287 0.8593 47 1 9.7740 -12.8348 -0.4950 48 1 6.1831 -4.5480 -1.0209 49 1 5.5233 -4.8600 0.6127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192723107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:07 Heat of formation + Delta-G solvation = -98.337276 kcal Electronic energy + Delta-G solvation = -29775.979158 eV Core-core repulsion = 25545.212332 eV Total energy + Delta-G solvation = -4230.766826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.58644 -40.74945 -40.11445 -38.78243 -36.79522 -36.39435 -35.81815 -33.76328 -32.73204 -31.48755 -29.91134 -29.42035 -28.51852 -26.82593 -26.57711 -25.06999 -23.87468 -21.40353 -21.27679 -20.97730 -20.17155 -19.66447 -18.72368 -17.92596 -17.71516 -17.19754 -17.08397 -16.88772 -16.78848 -16.30605 -15.91227 -15.82921 -15.43405 -15.39380 -14.88312 -14.70021 -14.41041 -14.31114 -14.24884 -14.08821 -13.85242 -13.65264 -13.44439 -13.35559 -13.30961 -13.16005 -12.90136 -12.86234 -12.81134 -12.56904 -12.43244 -12.35212 -11.99216 -11.84769 -11.78560 -11.48694 -11.11760 -10.55709 -10.37163 -10.24099 -9.65394 -9.63796 -9.25434 -8.42607 -6.02454 1.27695 1.33244 1.40835 1.57565 1.65259 1.68790 1.93957 2.20384 2.24681 2.63527 3.13094 3.22358 3.29761 3.48366 3.71535 3.80827 4.04785 4.11051 4.22612 4.27316 4.28459 4.35045 4.39573 4.42502 4.45020 4.45895 4.54616 4.58289 4.67164 4.75753 4.82793 4.85077 4.92343 4.93156 5.01953 5.06564 5.21464 5.23768 5.33702 5.51959 5.53721 5.87028 5.98080 6.19743 6.33418 6.53366 6.58488 6.87433 7.12666 7.29670 7.38793 7.95285 8.74795 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.002157 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.075717 B =12978.962247 C =14358.278955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.624 5.624 3 C 0.065 3.935 4 C 0.498 3.502 5 O -0.562 6.562 6 C -0.143 4.143 7 C 0.516 3.484 8 O -0.563 6.563 9 N -0.618 5.618 10 C 0.099 3.901 11 C -0.117 4.117 12 C 0.074 3.926 13 H 0.072 0.928 14 N -0.528 5.528 15 C 0.029 3.971 16 C 0.051 3.949 17 C 0.454 3.546 18 O -0.600 6.600 19 N -0.595 5.595 20 C -0.324 4.324 21 H 0.059 0.941 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.959 3.041 25 H -0.262 1.262 26 H -0.272 1.272 27 H -0.234 1.234 28 C 0.112 3.888 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.036 0.964 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.387 0.613 47 H 0.279 0.721 48 H 0.057 0.943 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 35.582 8.171 39.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.359 5.359 3 C -0.076 4.076 4 C 0.285 3.715 5 O -0.439 6.439 6 C -0.185 4.185 7 C 0.305 3.695 8 O -0.440 6.440 9 N -0.354 5.354 10 C -0.022 4.022 11 C -0.155 4.155 12 C -0.035 4.035 13 H 0.089 0.911 14 N -0.253 5.253 15 C -0.119 4.119 16 C -0.080 4.080 17 C 0.241 3.759 18 O -0.484 6.484 19 N -0.237 5.237 20 C -0.453 4.453 21 H 0.077 0.923 22 C -0.212 4.212 23 N -0.573 5.573 24 Si 0.780 3.220 25 H -0.187 1.187 26 H -0.197 1.197 27 H -0.157 1.157 28 C -0.012 4.012 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.182 0.818 36 H 0.178 0.822 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.222 0.778 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.952 34.595 7.089 37.970 hybrid contribution -0.498 -1.543 1.003 1.906 sum -14.450 33.052 8.092 36.969 Atomic orbital electron populations 1.21665 0.79094 1.03184 1.02080 1.47935 1.07548 1.06877 1.73547 1.22223 0.98327 0.83403 1.03666 1.20746 0.90721 0.83472 0.76557 1.90862 1.70793 1.32825 1.49445 1.21646 0.92261 0.94439 1.10110 1.20488 0.80505 0.92109 0.76426 1.90869 1.55226 1.47930 1.49955 1.48507 1.05133 1.08396 1.73322 1.22422 0.84466 0.90577 1.04759 1.22744 0.97227 0.92439 1.03100 1.22824 0.90183 0.92642 0.97884 0.91061 1.61512 1.03177 0.99852 1.60761 1.22425 0.88672 1.02818 0.97977 1.21831 0.99337 0.88587 0.98279 1.20767 0.86534 0.83307 0.85244 1.90510 1.37397 1.81594 1.38867 1.42079 1.34738 1.05635 1.41198 1.18999 1.16199 0.86866 1.23274 0.92270 1.26035 1.00479 0.94683 1.00025 1.69792 1.41569 1.01614 1.44346 0.85439 0.78178 0.79557 0.78852 1.18660 1.19718 1.15717 1.22077 0.92783 0.85618 1.00743 0.92570 0.88109 0.93449 0.87864 0.90388 0.90404 0.81819 0.82163 0.88409 0.87552 0.87120 0.90265 0.92983 0.94512 0.89243 0.90388 0.87773 0.77780 0.91173 0.92494 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.48 127.77 1.34 2.32 16 2 N -0.62 -7.43 3.27 -871.90 -2.85 -10.29 16 3 C 0.06 0.05 10.60 127.77 1.35 1.40 16 4 C 0.50 10.01 7.67 87.66 0.67 10.68 16 5 O -0.56 -19.27 13.76 20.41 0.28 -18.98 16 6 C -0.14 -1.59 3.69 29.10 0.11 -1.49 16 7 C 0.52 12.05 7.84 87.66 0.69 12.74 16 8 O -0.56 -21.04 14.44 20.42 0.29 -20.75 16 9 N -0.62 -11.58 3.33 -811.67 -2.70 -14.28 16 10 C 0.10 0.79 6.49 86.74 0.56 1.36 16 11 C -0.12 -1.42 5.32 31.80 0.17 -1.26 16 12 C 0.07 1.47 2.71 46.32 0.13 1.60 16 13 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 14 N -0.53 -15.17 4.40 -893.41 -3.93 -19.10 16 15 C 0.03 0.78 8.97 127.69 1.15 1.92 16 16 C 0.05 1.65 5.33 85.56 0.46 2.11 16 17 C 0.45 20.97 7.46 87.66 0.65 21.62 16 18 O -0.60 -33.02 13.92 -3.07 -0.04 -33.06 16 19 N -0.59 -29.06 5.09 -306.99 -1.56 -30.63 16 20 C -0.32 -19.36 10.16 84.04 0.85 -18.51 16 21 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.93 -57.21 13.96 21.66 0.30 -56.91 16 24 Si 0.96 40.63 27.74 68.60 1.90 42.53 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.23 -8.47 6.52 99.48 0.65 -7.82 16 28 C 0.11 2.73 5.41 86.86 0.47 3.20 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.10 0.52 8.07 -2.39 -0.02 0.50 16 31 H 0.05 0.86 7.42 -2.39 -0.02 0.84 16 32 H 0.10 -0.42 5.77 -2.39 -0.01 -0.44 16 33 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.16 0.36 7.79 -2.39 -0.02 0.34 16 36 H 0.16 0.50 7.79 -2.39 -0.02 0.48 16 37 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.11 0.14 8.14 -2.39 -0.02 0.13 16 39 H 0.11 0.78 8.11 -2.39 -0.02 0.76 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.93 5.81 -2.39 -0.01 1.92 16 42 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.09 1.93 7.22 -2.39 -0.02 1.92 16 44 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 45 H 0.10 3.13 6.75 -2.39 -0.02 3.11 16 46 H 0.39 16.08 5.76 -92.71 -0.53 15.55 16 47 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 48 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 49 H 0.06 1.63 7.68 -2.39 -0.02 1.61 16 Total: -1.00 -100.23 393.51 1.12 -99.11 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.37 Total: 24.97 kcal Atomic # 6 Polarization: 28.33 SS G_CDS: 9.06 Total: 37.39 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -10.74 Total: -131.21 kcal Atomic # 8 Polarization: -73.33 SS G_CDS: 0.53 Total: -72.80 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.90 Total: 42.53 kcal Total: -100.23 1.12 -99.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192723107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.769 kcal (2) G-P(sol) polarization free energy of solvation -100.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds