Wall clock time and date at job start Sat Apr 11 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47517 * 7.01605 * 3 2 1 5 5 H 1.09001 * 109.47163 * 304.91375 * 4 3 2 6 6 C 1.52999 * 109.47232 * 64.91571 * 4 3 2 7 7 C 1.50694 * 109.47079 * 186.80193 * 6 4 3 8 8 O 1.21283 * 120.00489 * 1.99009 * 7 6 4 9 9 N 1.34777 * 119.99807 * 181.99117 * 7 6 4 10 10 C 1.47022 * 125.65149 * 359.97051 * 9 7 6 11 11 C 1.54325 * 107.40368 * 178.89985 * 10 9 7 12 12 C 1.55401 * 102.82946 * 337.97855 * 11 10 9 13 13 H 1.08998 * 110.89589 * 277.26919 * 12 11 10 14 14 N 1.46495 * 111.07030 * 153.48738 * 12 11 10 15 15 C 1.46507 * 120.00003 * 307.66320 * 14 12 11 16 16 C 1.36941 * 120.00130 * 127.66447 * 14 12 11 17 17 H 1.07994 * 119.99845 * 327.68920 * 16 14 12 18 18 C 1.38818 * 119.99815 * 147.68637 * 16 14 12 19 19 N 1.31614 * 119.99701 * 153.56434 * 18 16 14 20 20 Si 1.86800 * 120.00126 * 333.55877 * 18 16 14 21 21 H 1.48496 * 109.46940 * 93.45726 * 20 18 16 22 22 H 1.48493 * 109.47247 * 213.46084 * 20 18 16 23 23 H 1.48505 * 109.47214 * 333.46136 * 20 18 16 24 24 C 1.47429 * 125.64743 * 180.02562 * 9 7 6 25 25 C 1.50701 * 109.47225 * 184.91534 * 4 3 2 26 26 C 1.38237 * 119.99952 * 299.72495 * 25 4 3 27 27 C 1.38230 * 119.99889 * 179.76829 * 26 25 4 28 28 C 1.38231 * 119.99976 * 0.50416 * 27 26 25 29 29 C 1.38231 * 120.00107 * 359.74988 * 28 27 26 30 30 C 1.38229 * 119.99933 * 359.97438 * 29 28 27 31 31 H 4.44643 * 5.63318 * 180.02562 * 4 1 2 32 32 H 1.09002 * 109.47017 * 247.01254 * 3 2 1 33 33 H 1.09007 * 109.46929 * 127.01683 * 3 2 1 34 34 H 1.09000 * 109.47246 * 66.79923 * 6 4 3 35 35 H 1.09007 * 109.46704 * 306.80036 * 6 4 3 36 36 H 1.08996 * 109.88485 * 298.40139 * 10 9 7 37 37 H 1.09003 * 109.88029 * 59.41021 * 10 9 7 38 38 H 1.08995 * 110.72214 * 96.25469 * 11 10 9 39 39 H 1.09010 * 110.71988 * 219.52475 * 11 10 9 40 40 H 1.09001 * 109.46840 * 85.45905 * 15 14 12 41 41 H 1.08997 * 109.47045 * 205.45809 * 15 14 12 42 42 H 1.08997 * 109.47102 * 325.46191 * 15 14 12 43 43 H 0.97003 * 119.99816 * 179.97438 * 19 18 16 44 44 H 1.08996 * 110.36762 * 322.92539 * 24 9 7 45 45 H 1.09005 * 110.36958 * 85.14773 * 24 9 7 46 46 H 1.07996 * 119.99849 * 359.97438 * 26 25 4 47 47 H 1.08006 * 120.00385 * 180.23125 * 27 26 25 48 48 H 1.08006 * 119.99987 * 179.72383 * 28 27 26 49 49 H 1.08001 * 120.00030 * 179.97438 * 29 28 27 50 50 H 1.08008 * 120.00014 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4308 -0.1762 5 1 2.7236 -2.0685 0.5944 6 6 2.7505 -1.9510 -1.5565 7 6 3.1054 -3.4113 -1.6674 8 8 3.5984 -3.9891 -0.7218 9 7 2.8749 -4.0754 -2.8173 10 6 2.2850 -3.5007 -4.0352 11 6 2.2396 -4.6189 -5.0980 12 6 3.3247 -5.6133 -4.5993 13 1 4.3179 -5.2967 -4.9177 14 7 3.0396 -6.9760 -5.0552 15 6 1.7233 -7.5703 -4.8096 16 6 4.0036 -7.6943 -5.7109 17 1 4.7197 -7.1877 -6.3408 18 6 4.0604 -9.0737 -5.5657 19 7 4.5819 -9.8149 -6.5202 20 14 3.3967 -9.8779 -4.0158 21 1 1.9843 -10.2816 -4.2335 22 1 4.2103 -11.0775 -3.6933 23 1 3.4678 -8.9139 -2.8885 24 6 3.1716 -5.4987 -3.0619 25 6 4.6588 -1.4466 -0.0556 26 6 5.4307 -0.7110 -0.9354 27 6 6.8083 -0.7218 -0.8217 28 6 7.4145 -1.4763 0.1651 29 6 6.6429 -2.2161 1.0416 30 6 5.2651 -2.2008 0.9316 31 1 -1.0497 -0.0004 -0.0002 32 1 3.0091 0.4022 0.9461 33 1 3.0090 0.6196 -0.8206 34 1 3.2790 -1.3891 -2.3266 35 1 1.6756 -1.8271 -1.6895 36 1 1.2757 -3.1463 -3.8266 37 1 2.9013 -2.6754 -4.3918 38 1 1.2593 -5.0951 -5.1150 39 1 2.4959 -4.2263 -6.0821 40 1 1.0391 -7.2800 -5.6069 41 1 1.8136 -8.6563 -4.7858 42 1 1.3377 -7.2167 -3.8533 43 1 4.6219 -10.7788 -6.4186 44 1 4.0996 -5.7834 -2.5661 45 1 2.3489 -6.1231 -2.7133 46 1 4.9572 -0.1253 -1.7094 47 1 7.4112 -0.1441 -1.5067 48 1 8.4910 -1.4883 0.2511 49 1 7.1166 -2.8060 1.8124 50 1 4.6622 -2.7792 1.6162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194531031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:33 Heat of formation + Delta-G solvation = 72.940694 kcal Electronic energy + Delta-G solvation = -29571.823314 eV Core-core repulsion = 25759.332921 eV Total energy + Delta-G solvation = -3812.490393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.30938 -39.21358 -37.59079 -36.07613 -34.96944 -32.84165 -31.88842 -30.93364 -30.42650 -29.66600 -28.79093 -27.61521 -26.21699 -24.25195 -23.28102 -22.57755 -22.34338 -20.64318 -19.44223 -18.94105 -18.27924 -17.11296 -17.01358 -16.91474 -16.22578 -15.65303 -15.46197 -15.10948 -14.65016 -14.42071 -14.32778 -13.94412 -13.87620 -13.49215 -13.37863 -13.25378 -12.88447 -12.73499 -12.62007 -12.38943 -12.27040 -12.21451 -12.09562 -11.98973 -11.69483 -11.56682 -11.06801 -10.91383 -10.87224 -10.79779 -10.54870 -10.46443 -10.30938 -10.16651 -9.97982 -9.64586 -9.57037 -8.90887 -8.71157 -8.55632 -8.35592 -6.99456 -6.06737 -3.41812 1.31576 1.41997 2.56695 2.59889 2.84566 3.18038 3.28348 3.46628 3.52187 3.76173 4.06176 4.47824 4.49642 4.60727 4.64960 4.77694 4.90293 4.96518 5.05981 5.07316 5.09634 5.17980 5.20248 5.29164 5.34955 5.39741 5.42511 5.48258 5.51574 5.61805 5.69057 5.75850 5.76393 5.87324 5.88229 5.99108 6.05644 6.12624 6.21051 6.31425 6.40542 6.43253 6.50278 6.51366 6.61806 6.62734 6.66384 6.77978 6.98956 7.37450 7.77869 7.92812 8.27619 8.38521 8.88637 9.63990 10.00786 11.08658 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003009 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.427272 B = 9301.906355 C =10446.173557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.184 4.184 3 C -0.005 4.005 4 C -0.027 4.027 5 H 0.091 0.909 6 C -0.130 4.130 7 C 0.524 3.476 8 O -0.537 6.537 9 N -0.616 5.616 10 C 0.104 3.896 11 C -0.150 4.150 12 C 0.172 3.828 13 H 0.086 0.914 14 N -0.594 5.594 15 C 0.105 3.895 16 C -0.275 4.275 17 H 0.084 0.916 18 C 0.037 3.963 19 N -0.893 5.893 20 Si 0.875 3.125 21 H -0.285 1.285 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.083 3.917 25 C -0.070 4.070 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.124 4.124 29 C -0.122 4.122 30 C -0.085 4.085 31 H 0.216 0.784 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.019 0.981 41 H 0.052 0.948 42 H 0.029 0.971 43 H 0.264 0.736 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 22.733 11.860 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.184 4.184 3 C -0.042 4.042 4 C -0.046 4.046 5 H 0.110 0.890 6 C -0.170 4.170 7 C 0.313 3.687 8 O -0.414 6.414 9 N -0.350 5.350 10 C -0.020 4.020 11 C -0.189 4.189 12 C 0.062 3.938 13 H 0.104 0.896 14 N -0.315 5.315 15 C -0.039 4.039 16 C -0.403 4.403 17 H 0.101 0.899 18 C -0.164 4.164 19 N -0.534 5.534 20 Si 0.705 3.295 21 H -0.213 1.213 22 H -0.229 1.229 23 H -0.194 1.194 24 C -0.042 4.042 25 C -0.070 4.070 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.142 4.142 29 C -0.140 4.140 30 C -0.103 4.103 31 H 0.233 0.767 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.542 22.258 12.345 25.697 hybrid contribution -0.617 -0.714 0.740 1.199 sum -4.159 21.544 13.086 25.548 Atomic orbital electron populations 1.24906 0.95958 1.00524 1.01286 1.23046 0.94429 1.00601 1.00322 1.18825 0.84687 0.96927 1.03740 1.19894 0.91909 0.95276 0.97505 0.89043 1.21775 1.03248 0.93514 0.98447 1.20175 0.78466 0.88642 0.81450 1.90693 1.44022 1.69673 1.37055 1.48527 1.61973 1.12162 1.12377 1.22010 0.97480 0.97155 0.85316 1.23153 1.01912 0.96245 0.97631 1.21631 0.96983 0.85872 0.89267 0.89573 1.44026 1.09791 1.11876 1.65830 1.21385 0.87187 0.98164 0.97152 1.18809 1.11064 0.89350 1.21043 0.89887 1.25349 0.97601 0.96381 0.97100 1.69908 1.47310 1.05352 1.30800 0.87058 0.77106 0.78743 0.86617 1.21341 1.22854 1.19418 1.23063 1.01158 0.80001 0.99938 1.19581 0.94196 0.97260 0.95923 1.20938 0.93868 0.99939 0.99049 1.21054 0.94673 0.99830 0.98549 1.21118 0.99660 0.97543 0.95848 1.21139 0.94017 0.99284 0.99552 1.21005 0.94517 0.97003 0.97780 0.76737 0.88989 0.89236 0.88896 0.88746 0.92109 0.91793 0.90638 0.90185 0.96235 0.92980 0.95219 0.92569 0.90800 0.91954 0.86398 0.86331 0.86438 0.86333 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.76 19.25 29.55 0.57 -1.19 16 2 C -0.18 -1.69 12.21 -37.13 -0.45 -2.14 16 3 C -0.01 -0.04 4.93 -29.52 -0.15 -0.19 16 4 C -0.03 -0.28 1.66 -91.77 -0.15 -0.43 16 5 H 0.09 1.08 7.59 -51.93 -0.39 0.68 16 6 C -0.13 -1.40 4.18 -27.89 -0.12 -1.51 16 7 C 0.52 7.99 7.59 -10.99 -0.08 7.90 16 8 O -0.54 -9.97 14.63 5.56 0.08 -9.89 16 9 N -0.62 -9.52 3.33 -170.51 -0.57 -10.08 16 10 C 0.10 1.28 6.48 -3.06 -0.02 1.26 16 11 C -0.15 -2.20 6.53 -24.76 -0.16 -2.36 16 12 C 0.17 3.27 3.54 -65.64 -0.23 3.03 16 13 H 0.09 1.69 7.96 -51.93 -0.41 1.28 16 14 N -0.59 -13.69 2.60 -170.87 -0.44 -14.13 16 15 C 0.11 2.26 8.18 59.85 0.49 2.75 16 16 C -0.27 -7.52 9.88 -15.06 -0.15 -7.67 16 17 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 18 C 0.04 1.05 5.24 -17.43 -0.09 0.96 16 19 N -0.89 -26.94 13.97 55.49 0.78 -26.16 16 20 Si 0.87 22.20 25.18 -169.99 -4.28 17.92 16 21 H -0.29 -6.97 6.52 56.52 0.37 -6.60 16 22 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 23 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.08 1.55 6.49 -2.52 -0.02 1.53 16 25 C -0.07 -0.79 3.85 -104.62 -0.40 -1.19 16 26 C -0.12 -1.23 8.68 -39.58 -0.34 -1.57 16 27 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 28 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 29 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 30 C -0.09 -1.05 8.77 -39.59 -0.35 -1.39 16 31 H 0.22 1.15 7.80 -54.11 -0.42 0.73 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.58 7.58 -51.92 -0.39 0.19 16 34 H 0.09 0.85 7.16 -51.93 -0.37 0.48 16 35 H 0.09 0.93 7.18 -51.92 -0.37 0.55 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.12 6.92 -51.93 -0.36 0.76 16 39 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 40 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 41 H 0.05 1.22 3.06 -51.93 -0.16 1.07 16 42 H 0.03 0.57 6.37 -51.93 -0.33 0.24 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.07 1.54 8.04 -51.93 -0.42 1.13 16 45 H 0.06 1.22 6.34 -51.93 -0.33 0.90 16 46 H 0.12 0.95 7.13 -52.49 -0.37 0.57 16 47 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 48 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 49 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 50 H 0.12 1.48 7.95 -52.48 -0.42 1.06 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -33.04 400.14 -8.97 -42.01 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.72 Total: 1.69 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.85 Total: -7.38 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.24 Total: -50.38 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.28 Total: 17.92 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.04 -8.97 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194531031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.947 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds