Wall clock time and date at job start Sat Apr 11 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47517 * 7.01605 * 3 2 1 5 5 H 1.09001 * 109.47163 * 304.91375 * 4 3 2 6 6 C 1.52999 * 109.47232 * 64.91571 * 4 3 2 7 7 C 1.50694 * 109.47079 * 186.80193 * 6 4 3 8 8 O 1.21283 * 120.00489 * 1.99009 * 7 6 4 9 9 N 1.34777 * 119.99807 * 181.99117 * 7 6 4 10 10 C 1.47022 * 125.65149 * 359.97051 * 9 7 6 11 11 C 1.54325 * 107.40368 * 178.89985 * 10 9 7 12 12 C 1.55401 * 102.82946 * 337.97855 * 11 10 9 13 13 H 1.08998 * 110.89589 * 277.26919 * 12 11 10 14 14 N 1.46495 * 111.07030 * 153.48738 * 12 11 10 15 15 C 1.46507 * 120.00003 * 307.66320 * 14 12 11 16 16 C 1.36941 * 120.00130 * 127.66447 * 14 12 11 17 17 H 1.07994 * 119.99845 * 327.68920 * 16 14 12 18 18 C 1.38818 * 119.99815 * 147.68637 * 16 14 12 19 19 N 1.31614 * 119.99701 * 153.56434 * 18 16 14 20 20 Si 1.86800 * 120.00126 * 333.55877 * 18 16 14 21 21 H 1.48496 * 109.46940 * 93.45726 * 20 18 16 22 22 H 1.48493 * 109.47247 * 213.46084 * 20 18 16 23 23 H 1.48505 * 109.47214 * 333.46136 * 20 18 16 24 24 C 1.47429 * 125.64743 * 180.02562 * 9 7 6 25 25 C 1.50701 * 109.47225 * 184.91534 * 4 3 2 26 26 C 1.38237 * 119.99952 * 299.72495 * 25 4 3 27 27 C 1.38230 * 119.99889 * 179.76829 * 26 25 4 28 28 C 1.38231 * 119.99976 * 0.50416 * 27 26 25 29 29 C 1.38231 * 120.00107 * 359.74988 * 28 27 26 30 30 C 1.38229 * 119.99933 * 359.97438 * 29 28 27 31 31 H 4.44643 * 5.63318 * 180.02562 * 4 1 2 32 32 H 1.09002 * 109.47017 * 247.01254 * 3 2 1 33 33 H 1.09007 * 109.46929 * 127.01683 * 3 2 1 34 34 H 1.09000 * 109.47246 * 66.79923 * 6 4 3 35 35 H 1.09007 * 109.46704 * 306.80036 * 6 4 3 36 36 H 1.08996 * 109.88485 * 298.40139 * 10 9 7 37 37 H 1.09003 * 109.88029 * 59.41021 * 10 9 7 38 38 H 1.08995 * 110.72214 * 96.25469 * 11 10 9 39 39 H 1.09010 * 110.71988 * 219.52475 * 11 10 9 40 40 H 1.09001 * 109.46840 * 85.45905 * 15 14 12 41 41 H 1.08997 * 109.47045 * 205.45809 * 15 14 12 42 42 H 1.08997 * 109.47102 * 325.46191 * 15 14 12 43 43 H 0.97003 * 119.99816 * 179.97438 * 19 18 16 44 44 H 1.08996 * 110.36762 * 322.92539 * 24 9 7 45 45 H 1.09005 * 110.36958 * 85.14773 * 24 9 7 46 46 H 1.07996 * 119.99849 * 359.97438 * 26 25 4 47 47 H 1.08006 * 120.00385 * 180.23125 * 27 26 25 48 48 H 1.08006 * 119.99987 * 179.72383 * 28 27 26 49 49 H 1.08001 * 120.00030 * 179.97438 * 29 28 27 50 50 H 1.08008 * 120.00014 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4308 -0.1762 5 1 2.7236 -2.0685 0.5944 6 6 2.7505 -1.9510 -1.5565 7 6 3.1054 -3.4113 -1.6674 8 8 3.5984 -3.9891 -0.7218 9 7 2.8749 -4.0754 -2.8173 10 6 2.2850 -3.5007 -4.0352 11 6 2.2396 -4.6189 -5.0980 12 6 3.3247 -5.6133 -4.5993 13 1 4.3179 -5.2967 -4.9177 14 7 3.0396 -6.9760 -5.0552 15 6 1.7233 -7.5703 -4.8096 16 6 4.0036 -7.6943 -5.7109 17 1 4.7197 -7.1877 -6.3408 18 6 4.0604 -9.0737 -5.5657 19 7 4.5819 -9.8149 -6.5202 20 14 3.3967 -9.8779 -4.0158 21 1 1.9843 -10.2816 -4.2335 22 1 4.2103 -11.0775 -3.6933 23 1 3.4678 -8.9139 -2.8885 24 6 3.1716 -5.4987 -3.0619 25 6 4.6588 -1.4466 -0.0556 26 6 5.4307 -0.7110 -0.9354 27 6 6.8083 -0.7218 -0.8217 28 6 7.4145 -1.4763 0.1651 29 6 6.6429 -2.2161 1.0416 30 6 5.2651 -2.2008 0.9316 31 1 -1.0497 -0.0004 -0.0002 32 1 3.0091 0.4022 0.9461 33 1 3.0090 0.6196 -0.8206 34 1 3.2790 -1.3891 -2.3266 35 1 1.6756 -1.8271 -1.6895 36 1 1.2757 -3.1463 -3.8266 37 1 2.9013 -2.6754 -4.3918 38 1 1.2593 -5.0951 -5.1150 39 1 2.4959 -4.2263 -6.0821 40 1 1.0391 -7.2800 -5.6069 41 1 1.8136 -8.6563 -4.7858 42 1 1.3377 -7.2167 -3.8533 43 1 4.6219 -10.7788 -6.4186 44 1 4.0996 -5.7834 -2.5661 45 1 2.3489 -6.1231 -2.7133 46 1 4.9572 -0.1253 -1.7094 47 1 7.4112 -0.1441 -1.5067 48 1 8.4910 -1.4883 0.2511 49 1 7.1166 -2.8060 1.8124 50 1 4.6622 -2.7792 1.6162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194531031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:31 Heat of formation + Delta-G solvation = 54.940689 kcal Electronic energy + Delta-G solvation = -29572.603853 eV Core-core repulsion = 25759.332921 eV Total energy + Delta-G solvation = -3813.270932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.37458 -40.22919 -38.91129 -36.92988 -36.59066 -33.85349 -33.51483 -31.87342 -31.68732 -30.61615 -29.82012 -28.69053 -28.07000 -25.56746 -24.43140 -23.68999 -23.39115 -21.53044 -20.98070 -20.03535 -19.03816 -18.89464 -18.06185 -17.88061 -17.75261 -16.96706 -16.50227 -16.36136 -15.73048 -15.59938 -15.30100 -15.02001 -14.87238 -14.72540 -14.53491 -14.35295 -14.28089 -14.18547 -14.11100 -13.52969 -13.51681 -13.41616 -13.35318 -13.07179 -12.96296 -12.58328 -12.43983 -12.34195 -12.25506 -12.04173 -11.82998 -11.68479 -11.63074 -11.46436 -11.12547 -10.91941 -10.83904 -10.64335 -9.73675 -9.65535 -9.50417 -8.89333 -8.26298 -5.56398 0.50569 0.58779 1.24192 1.38691 1.47640 1.68660 1.90879 1.97960 2.03414 2.36209 2.94222 2.98081 3.28396 3.44578 3.53264 3.78256 3.83221 3.93540 3.98356 4.14921 4.17358 4.20633 4.27490 4.32588 4.35988 4.43491 4.46442 4.51493 4.61626 4.63673 4.69576 4.69806 4.76088 4.79641 4.88045 4.95545 4.95988 4.98871 5.12193 5.16946 5.22274 5.24828 5.26605 5.27327 5.37038 5.62802 5.68737 5.80456 5.85582 6.11006 6.19474 6.61260 6.77790 6.89383 7.20962 7.57014 7.96686 8.93567 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003009 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.427272 B = 9301.906355 C =10446.173557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.211 4.211 3 C 0.003 3.997 4 C -0.021 4.021 5 H 0.066 0.934 6 C -0.117 4.117 7 C 0.516 3.484 8 O -0.579 6.579 9 N -0.618 5.618 10 C 0.106 3.894 11 C -0.137 4.137 12 C 0.164 3.836 13 H 0.071 0.929 14 N -0.607 5.607 15 C 0.105 3.895 16 C -0.261 4.261 17 H 0.053 0.947 18 C -0.016 4.016 19 N -0.940 5.940 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.309 1.309 23 H -0.273 1.273 24 C 0.093 3.907 25 C -0.077 4.077 26 C -0.123 4.123 27 C -0.129 4.129 28 C -0.136 4.136 29 C -0.139 4.139 30 C -0.112 4.112 31 H 0.238 0.762 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.031 0.969 42 H 0.052 0.948 43 H 0.264 0.736 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.147 0.853 47 H 0.143 0.857 48 H 0.134 0.866 49 H 0.124 0.876 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 26.003 11.627 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.211 4.211 3 C -0.034 4.034 4 C -0.040 4.040 5 H 0.085 0.915 6 C -0.157 4.157 7 C 0.307 3.693 8 O -0.459 6.459 9 N -0.352 5.352 10 C -0.016 4.016 11 C -0.176 4.176 12 C 0.056 3.944 13 H 0.090 0.910 14 N -0.330 5.330 15 C -0.039 4.039 16 C -0.391 4.391 17 H 0.071 0.929 18 C -0.213 4.213 19 N -0.584 5.584 20 Si 0.763 3.237 21 H -0.194 1.194 22 H -0.238 1.238 23 H -0.198 1.198 24 C -0.033 4.033 25 C -0.077 4.077 26 C -0.141 4.141 27 C -0.146 4.146 28 C -0.153 4.153 29 C -0.157 4.157 30 C -0.130 4.130 31 H 0.255 0.745 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.165 0.835 47 H 0.161 0.839 48 H 0.152 0.848 49 H 0.142 0.858 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.547 25.583 12.122 28.848 hybrid contribution 0.020 -1.649 0.817 1.840 sum -5.527 23.934 12.939 27.764 Atomic orbital electron populations 1.25622 0.96853 0.99545 1.00541 1.23401 0.95090 1.01485 1.01110 1.18778 0.84316 0.95387 1.04888 1.19802 0.91171 0.96394 0.96607 0.91518 1.21800 1.04573 0.89929 0.99366 1.21074 0.77419 0.90294 0.80524 1.90688 1.45774 1.70892 1.38529 1.48608 1.62153 1.10677 1.13742 1.22223 0.99736 0.96622 0.82970 1.23049 0.99925 0.95513 0.99112 1.21713 0.98221 0.84783 0.89650 0.91040 1.44094 1.09673 1.13058 1.66155 1.21421 0.86628 0.96796 0.99056 1.18762 1.10789 0.89527 1.20008 0.92887 1.25877 0.99062 0.97126 0.99240 1.70006 1.50301 1.05555 1.32529 0.86088 0.77342 0.77305 0.82919 1.19412 1.23778 1.19800 1.22633 0.99121 0.82460 0.99061 1.19749 0.94957 0.97146 0.95808 1.21268 0.93951 0.99639 0.99205 1.21436 0.95200 0.99508 0.98496 1.21411 1.00635 0.97451 0.95844 1.21341 0.94046 0.99988 1.00365 1.21096 0.94998 0.98107 0.98782 0.74521 0.88654 0.87000 0.86208 0.86951 0.88873 0.88866 0.90333 0.88765 0.94269 0.95120 0.92963 0.92671 0.94263 0.92942 0.83505 0.83944 0.84770 0.85799 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.89 19.25 74.32 1.43 -1.46 16 2 C -0.21 -3.28 12.21 31.12 0.38 -2.90 16 3 C 0.00 0.03 4.93 28.79 0.14 0.18 16 4 C -0.02 -0.39 1.66 -11.54 -0.02 -0.41 16 5 H 0.07 1.58 7.59 -2.39 -0.02 1.56 16 6 C -0.12 -2.13 4.18 29.85 0.12 -2.01 16 7 C 0.52 14.89 7.59 87.66 0.67 15.55 16 8 O -0.58 -21.74 14.63 -3.04 -0.04 -21.79 16 9 N -0.62 -17.71 3.33 -811.76 -2.70 -20.41 16 10 C 0.11 2.14 6.48 86.73 0.56 2.70 16 11 C -0.14 -3.55 6.53 31.87 0.21 -3.34 16 12 C 0.16 6.10 3.54 46.47 0.16 6.26 16 13 H 0.07 2.83 7.96 -2.39 -0.02 2.81 16 14 N -0.61 -27.74 2.60 -694.52 -1.81 -29.55 16 15 C 0.10 4.30 8.18 127.77 1.05 5.35 16 16 C -0.26 -14.60 9.88 84.03 0.83 -13.77 16 17 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 18 C -0.02 -0.93 5.24 84.86 0.44 -0.48 16 19 N -0.94 -58.32 13.97 21.65 0.30 -58.02 16 20 Si 0.93 46.85 25.18 68.60 1.73 48.58 16 21 H -0.27 -12.50 6.52 99.48 0.65 -11.85 16 22 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 23 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 24 C 0.09 3.44 6.49 86.86 0.56 4.00 16 25 C -0.08 -1.65 3.85 -19.87 -0.08 -1.73 16 26 C -0.12 -2.20 8.68 22.27 0.19 -2.00 16 27 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 28 C -0.14 -2.78 10.05 22.27 0.22 -2.56 16 29 C -0.14 -3.29 10.05 22.27 0.22 -3.07 16 30 C -0.11 -2.85 8.77 22.27 0.20 -2.66 16 31 H 0.24 1.76 7.80 -4.43 -0.03 1.73 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 0.98 7.58 -2.38 -0.02 0.96 16 34 H 0.12 1.57 7.16 -2.39 -0.02 1.56 16 35 H 0.11 1.71 7.18 -2.38 -0.02 1.69 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 38 H 0.08 2.03 6.92 -2.39 -0.02 2.01 16 39 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.04 1.46 7.92 -2.39 -0.02 1.44 16 41 H 0.03 1.39 3.06 -2.39 -0.01 1.39 16 42 H 0.05 1.89 6.37 -2.39 -0.02 1.88 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 45 H 0.05 2.03 6.34 -2.38 -0.02 2.01 16 46 H 0.15 1.69 7.13 -2.91 -0.02 1.66 16 47 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 48 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 49 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 50 H 0.11 2.87 7.95 -2.91 -0.02 2.84 16 Total: -1.00 -75.53 400.14 5.86 -69.66 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.86 Total: 15.99 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 7.53 Total: -4.46 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -4.20 Total: -107.98 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.04 Total: -21.79 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.73 Total: 48.58 kcal Total: -75.53 5.86 -69.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194531031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.602 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds