Wall clock time and date at job start Sat Apr 11 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99990 * 2 1 4 4 C 1.34779 * 120.00030 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99774 * 0.02562 * 4 2 1 6 6 C 1.50706 * 119.99871 * 179.97438 * 4 2 1 7 7 C 1.50701 * 109.46899 * 180.02562 * 6 4 2 8 8 O 1.21283 * 119.99916 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99976 * 180.02562 * 7 6 4 10 10 C 1.47610 * 118.74415 * 359.97438 * 9 7 6 11 11 C 1.53833 * 111.28702 * 138.30698 * 10 9 7 12 12 C 1.51271 * 109.63825 * 319.97674 * 11 10 9 13 13 N 1.46203 * 109.09413 * 92.40537 * 12 11 10 14 14 C 1.46897 * 111.00156 * 144.75742 * 13 12 11 15 15 C 1.50699 * 109.46919 * 64.74987 * 14 13 12 16 16 O 1.21294 * 120.00052 * 354.38236 * 15 14 13 17 17 N 1.34771 * 120.00115 * 174.37327 * 15 14 13 18 18 C 1.37097 * 120.00212 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00143 * 0.02562 * 18 17 15 20 20 C 1.38958 * 119.99991 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47288 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47082 * 120.00236 * 22 20 18 25 25 H 1.48502 * 109.47137 * 240.00381 * 22 20 18 26 26 C 1.41441 * 116.34538 * 272.96464 * 13 12 11 27 27 C 1.44883 * 118.74747 * 180.02562 * 9 7 6 28 28 H 1.09000 * 109.47255 * 269.99576 * 1 2 3 29 29 H 1.08995 * 109.47201 * 30.00430 * 1 2 3 30 30 H 1.09003 * 109.47152 * 149.99749 * 1 2 3 31 31 H 1.09001 * 109.47200 * 269.99914 * 3 2 1 32 32 H 1.08999 * 109.47239 * 29.99953 * 3 2 1 33 33 H 1.09004 * 109.47179 * 149.99492 * 3 2 1 34 34 H 1.09003 * 109.46721 * 60.00439 * 6 4 2 35 35 H 1.08998 * 109.47183 * 300.00326 * 6 4 2 36 36 H 1.08999 * 109.11244 * 258.78211 * 10 9 7 37 37 H 1.09009 * 109.11688 * 17.90550 * 10 9 7 38 38 H 1.09004 * 109.44355 * 199.92091 * 11 10 9 39 39 H 1.08994 * 109.43073 * 80.02719 * 11 10 9 40 40 H 1.08994 * 109.53438 * 332.51879 * 12 11 10 41 41 H 1.09000 * 109.53335 * 212.28978 * 12 11 10 42 42 H 1.08990 * 109.47087 * 184.74985 * 14 13 12 43 43 H 1.09006 * 109.47138 * 304.75771 * 14 13 12 44 44 H 0.97004 * 120.00289 * 0.02562 * 17 15 14 45 45 H 0.96991 * 119.99772 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.38913 * 183.64130 * 26 13 12 47 47 H 1.09003 * 109.38722 * 303.32719 * 26 13 12 48 48 H 1.08997 * 109.43352 * 149.65630 * 27 9 7 49 49 H 1.08993 * 109.43477 * 29.78725 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6460 -1.1672 -0.0001 7 6 4.1483 -2.5880 0.0001 8 8 3.3601 -3.5098 0.0001 9 7 5.4734 -2.8343 0.0001 10 6 6.4078 -1.6916 -0.0005 11 6 7.5899 -1.9363 0.9530 12 6 7.0943 -2.6051 2.2160 13 7 7.1986 -4.0553 2.0619 14 6 7.5528 -4.6959 3.3355 15 6 6.4366 -4.4927 4.3274 16 8 5.4905 -3.7902 4.0402 17 7 6.4896 -5.0917 5.5335 18 6 5.4740 -4.9073 6.4358 19 1 4.6312 -4.2823 6.1798 20 6 5.5289 -5.5245 7.6795 21 7 6.5547 -6.2845 7.9912 22 14 4.1447 -5.2737 8.9085 23 1 3.1147 -4.3812 8.3188 24 1 3.5321 -6.5856 9.2385 25 1 4.6867 -4.6554 10.1452 26 6 6.0960 -4.7032 1.4578 27 6 5.9263 -4.2105 -0.0003 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3792 1.5834 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0096 -0.6528 0.8895 35 1 4.0089 -0.6539 -0.8905 36 1 6.7887 -1.5427 -1.0108 37 1 5.8750 -0.7946 0.3157 38 1 8.0556 -0.9837 1.2055 39 1 8.3221 -2.5795 0.4650 40 1 6.0537 -2.3310 2.3894 41 1 7.7027 -2.2837 3.0614 42 1 7.7065 -5.7629 3.1750 43 1 8.4691 -4.2510 3.7236 44 1 7.2464 -5.6534 5.7634 45 1 6.5931 -6.7150 8.8595 46 1 6.2644 -5.7801 1.4583 47 1 5.1911 -4.4799 2.0229 48 1 6.8824 -4.2774 -0.5195 49 1 5.1924 -4.8337 -0.5112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197369455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:10 Heat of formation + Delta-G solvation = -104.540148 kcal Electronic energy + Delta-G solvation = -31293.417945 eV Core-core repulsion = 27062.382142 eV Total energy + Delta-G solvation = -4231.035803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79258 -40.91260 -40.01566 -38.44993 -36.60291 -36.25260 -35.63975 -33.58012 -33.35659 -32.38304 -30.30740 -28.69328 -27.86041 -27.07092 -26.67360 -25.58148 -23.40888 -21.88573 -21.00903 -20.81787 -19.91182 -19.48291 -18.73669 -18.01393 -17.43137 -17.39974 -17.11493 -16.77350 -16.56764 -16.46660 -16.26969 -16.02742 -15.54123 -15.45639 -15.04382 -14.72623 -14.41207 -14.23317 -14.13399 -13.93084 -13.62316 -13.50336 -13.42931 -13.28844 -13.12323 -13.03538 -12.92190 -12.85776 -12.62868 -12.48992 -12.35715 -12.20878 -12.16657 -11.77530 -11.69080 -11.50823 -11.01202 -10.83849 -10.48856 -10.05066 -9.67544 -9.55675 -9.03699 -8.51162 -6.01175 1.29191 1.34477 1.48329 1.55335 1.68979 1.81287 1.99685 2.24250 2.33247 2.98703 3.14434 3.24408 3.35377 3.62764 3.91946 4.05661 4.12293 4.21867 4.25608 4.30163 4.32719 4.39215 4.40072 4.46988 4.47918 4.51883 4.59279 4.65480 4.77952 4.80769 4.83102 4.87497 4.95381 4.96845 5.00843 5.14863 5.24973 5.34413 5.46972 5.52123 5.75834 5.89661 6.07951 6.26577 6.35284 6.49951 6.54744 7.07558 7.14614 7.33878 7.51246 8.07538 8.64481 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.003312 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.656523 B = 8451.012039 C =10241.584388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.626 5.626 3 C 0.067 3.933 4 C 0.496 3.504 5 O -0.561 6.561 6 C -0.149 4.149 7 C 0.494 3.506 8 O -0.562 6.562 9 N -0.605 5.605 10 C 0.100 3.900 11 C -0.121 4.121 12 C 0.072 3.928 13 N -0.515 5.515 14 C 0.056 3.944 15 C 0.405 3.595 16 O -0.627 6.627 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.917 5.917 22 Si 0.989 3.011 23 H -0.280 1.280 24 H -0.271 1.271 25 H -0.264 1.264 26 C 0.052 3.948 27 C 0.133 3.867 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.169 0.831 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.397 0.603 45 H 0.279 0.721 46 H 0.074 0.926 47 H -0.001 1.001 48 H 0.114 0.886 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 18.096 -19.366 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.361 5.361 3 C -0.074 4.074 4 C 0.284 3.716 5 O -0.438 6.438 6 C -0.191 4.191 7 C 0.282 3.718 8 O -0.439 6.439 9 N -0.338 5.338 10 C -0.020 4.020 11 C -0.159 4.159 12 C -0.056 4.056 13 N -0.237 5.237 14 C -0.075 4.075 15 C 0.192 3.808 16 O -0.515 6.515 17 N -0.209 5.209 18 C -0.464 4.464 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.558 5.558 22 Si 0.812 3.188 23 H -0.205 1.205 24 H -0.196 1.196 25 H -0.189 1.189 26 C -0.079 4.079 27 C 0.009 3.991 28 H 0.067 0.933 29 H 0.125 0.875 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.161 0.839 35 H 0.186 0.814 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.017 0.983 48 H 0.132 0.868 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.991 17.374 -19.717 26.449 hybrid contribution -1.400 -0.723 1.975 2.526 sum 1.592 16.651 -17.743 24.384 Atomic orbital electron populations 1.21690 0.78992 1.03481 1.01803 1.47951 1.07620 1.06846 1.73673 1.22194 0.97921 0.83378 1.03923 1.20761 0.90760 0.83569 0.76537 1.90842 1.70760 1.32867 1.49361 1.21720 0.92507 0.95682 1.09168 1.20832 0.82824 0.91786 0.76378 1.90826 1.55935 1.47696 1.49411 1.47955 1.05374 1.07771 1.72725 1.22427 0.90718 0.87176 1.01717 1.21891 0.97714 1.02295 0.94031 1.21522 0.99318 0.86143 0.98609 1.59143 1.38977 1.04747 1.20798 1.22198 0.95778 1.02208 0.87359 1.22319 0.90684 0.83539 0.84282 1.90507 1.38273 1.44056 1.78668 1.42093 1.21473 1.44045 1.13294 1.19598 1.01677 1.29469 0.95625 0.91243 1.25985 1.00279 0.95586 0.99175 1.69662 1.30736 1.31503 1.23852 0.84945 0.77640 0.78296 0.77872 1.20530 1.19582 1.18867 1.21672 0.91928 0.98278 0.95986 1.21376 1.00945 0.82246 0.94538 0.93286 0.87451 0.93237 0.89961 0.89265 0.89435 0.83930 0.81411 0.87906 0.88267 0.87318 0.89357 0.96130 0.92424 0.87808 0.86521 0.76947 0.91183 0.90776 0.98253 0.86780 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 10.44 127.77 1.33 2.88 16 2 N -0.63 -12.38 3.27 -871.89 -2.85 -15.24 16 3 C 0.07 0.53 10.24 127.77 1.31 1.84 16 4 C 0.50 14.51 7.67 87.66 0.67 15.18 16 5 O -0.56 -24.23 13.76 20.41 0.28 -23.95 16 6 C -0.15 -3.14 3.08 29.10 0.09 -3.05 16 7 C 0.49 15.99 7.62 87.66 0.67 16.66 16 8 O -0.56 -25.82 13.61 20.40 0.28 -25.54 16 9 N -0.60 -15.47 2.18 -817.68 -1.78 -17.25 16 10 C 0.10 1.41 5.99 86.45 0.52 1.93 16 11 C -0.12 -1.96 5.78 30.31 0.18 -1.78 16 12 C 0.07 2.07 4.13 85.87 0.35 2.43 16 13 N -0.51 -16.11 3.99 -916.06 -3.66 -19.77 16 14 C 0.06 1.94 5.58 85.56 0.48 2.41 16 15 C 0.40 19.66 7.22 87.66 0.63 20.29 16 16 O -0.63 -35.50 12.19 -3.07 -0.04 -35.54 16 17 N -0.57 -30.30 5.29 -306.99 -1.62 -31.93 16 18 C -0.33 -19.79 9.68 84.04 0.81 -18.97 16 19 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 21 N -0.92 -50.64 13.05 21.67 0.28 -50.36 16 22 Si 0.99 44.87 29.55 68.60 2.03 46.90 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 C 0.05 1.85 4.93 87.93 0.43 2.29 16 27 C 0.13 3.75 5.52 87.31 0.48 4.23 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 30 H 0.05 1.20 7.42 -2.39 -0.02 1.18 16 31 H 0.08 0.29 8.14 -2.39 -0.02 0.28 16 32 H 0.09 0.46 8.07 -2.39 -0.02 0.44 16 33 H 0.09 0.46 6.44 -2.38 -0.02 0.44 16 34 H 0.14 2.34 6.67 -2.39 -0.02 2.33 16 35 H 0.17 1.68 8.01 -2.39 -0.02 1.66 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.94 5.87 -2.38 -0.01 0.93 16 38 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.09 1.34 7.98 -2.39 -0.02 1.32 16 40 H 0.02 0.77 6.22 -2.39 -0.01 0.75 16 41 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 42 H 0.10 3.26 7.92 -2.39 -0.02 3.24 16 43 H 0.12 3.43 7.94 -2.38 -0.02 3.41 16 44 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 45 H 0.28 14.33 8.31 -92.72 -0.77 13.56 16 46 H 0.07 2.54 7.85 -2.39 -0.02 2.52 16 47 H 0.00 -0.04 6.22 -2.39 -0.01 -0.05 16 48 H 0.11 2.39 8.11 -2.39 -0.02 2.37 16 49 H 0.06 2.08 7.28 -2.39 -0.02 2.06 16 Total: -1.00 -96.40 385.16 1.58 -94.82 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.24 Total: 31.61 kcal Atomic # 6 Polarization: 37.83 SS G_CDS: 8.43 Total: 46.25 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -9.63 Total: -134.54 kcal Atomic # 8 Polarization: -85.56 SS G_CDS: 0.52 Total: -85.03 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -96.40 1.58 -94.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197369455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.720 kcal (2) G-P(sol) polarization free energy of solvation -96.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds