Wall clock time and date at job start Sat Apr 11 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 112.84650 * 2 1 4 4 C 1.53786 * 113.61563 * 131.19560 * 2 1 3 5 5 C 1.53779 * 87.07948 * 89.11597 * 4 2 1 6 6 C 1.53000 * 113.61160 * 139.97927 * 5 4 2 7 7 N 1.46907 * 109.47070 * 176.52583 * 6 5 4 8 8 C 1.46900 * 110.99928 * 179.97438 * 7 6 5 9 9 C 1.53346 * 109.42051 * 275.13331 * 8 7 6 10 10 C 1.53195 * 109.14901 * 178.67519 * 9 8 7 11 11 N 1.46919 * 108.89273 * 54.57640 * 10 9 8 12 12 C 1.34778 * 120.63255 * 126.34238 * 11 10 9 13 13 O 1.21279 * 120.00169 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00023 * 179.97438 * 12 11 10 15 15 S 1.81004 * 109.47124 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00170 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99808 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99655 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47281 * 89.99944 * 20 18 16 22 22 H 1.48503 * 109.47201 * 209.99866 * 20 18 16 23 23 H 1.48500 * 109.47189 * 329.99935 * 20 18 16 24 24 C 1.46933 * 118.74003 * 306.32349 * 11 10 9 25 25 C 1.53034 * 109.45742 * 155.00274 * 8 7 6 26 26 C 1.53776 * 87.17439 * 25.39068 * 5 4 2 27 27 H 1.09002 * 109.47322 * 288.79768 * 1 2 3 28 28 H 1.08995 * 109.47529 * 48.80428 * 1 2 3 29 29 H 1.09003 * 109.46686 * 168.80684 * 1 2 3 30 30 H 1.09003 * 109.46829 * 191.19529 * 3 2 1 31 31 H 1.08996 * 109.46927 * 311.19833 * 3 2 1 32 32 H 1.08997 * 109.47188 * 71.19681 * 3 2 1 33 33 H 1.09004 * 113.61309 * 334.57026 * 4 2 1 34 34 H 1.08996 * 113.61234 * 203.66980 * 4 2 1 35 35 H 1.08997 * 113.61429 * 270.79774 * 5 4 2 36 36 H 1.09005 * 109.47250 * 56.53195 * 6 5 4 37 37 H 1.08994 * 109.47121 * 296.52797 * 6 5 4 38 38 H 1.00902 * 110.99413 * 56.05189 * 7 6 5 39 39 H 1.09001 * 109.45925 * 35.03526 * 8 7 6 40 40 H 1.08997 * 109.68637 * 58.70728 * 9 8 7 41 41 H 1.09002 * 109.47277 * 298.50984 * 9 8 7 42 42 H 1.09002 * 109.58720 * 294.71670 * 10 9 8 43 43 H 1.08996 * 109.58651 * 174.43567 * 10 9 8 44 44 H 1.09001 * 109.47488 * 299.99559 * 14 12 11 45 45 H 1.09001 * 109.47269 * 59.99982 * 14 12 11 46 46 H 0.96996 * 119.99581 * 180.02562 * 19 18 16 47 47 H 1.08994 * 109.58580 * 173.39910 * 24 11 10 48 48 H 1.09006 * 109.57831 * 293.67403 * 24 11 10 49 49 H 1.08994 * 109.50232 * 61.43691 * 25 8 7 50 50 H 1.09007 * 109.52628 * 301.35352 * 25 8 7 51 51 H 1.09002 * 113.61878 * 89.15730 * 26 5 4 52 52 H 1.09002 * 113.61315 * 220.06035 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9281 1.0603 5 6 2.0930 -2.0425 0.0020 6 6 3.3265 -2.9477 0.0029 7 7 3.1446 -4.0242 -0.9802 8 6 4.3125 -4.9148 -1.0076 9 6 5.3793 -4.3282 -1.9399 10 6 6.6070 -5.2446 -1.9382 11 7 6.1835 -6.6079 -2.2854 12 6 6.7761 -7.2747 -3.2958 13 8 7.6676 -6.7496 -3.9284 14 6 6.3308 -8.6728 -3.6394 15 16 7.3094 -9.2931 -5.0299 16 6 6.5999 -10.8955 -5.2128 17 1 5.8022 -11.2109 -4.5566 18 6 7.0654 -11.7519 -6.2010 19 7 8.0373 -11.3672 -7.0010 20 14 6.3126 -13.4504 -6.3953 21 1 5.1704 -13.3803 -7.3418 22 1 7.3361 -14.3880 -6.9232 23 1 5.8329 -13.9332 -5.0755 24 6 5.1020 -7.2308 -1.5100 25 6 3.8892 -6.2950 -1.5156 26 6 2.1448 -0.9318 -1.0602 27 1 -0.3634 0.3311 0.9729 28 1 -0.3634 0.6768 -0.7732 29 1 -0.3633 -1.0082 -0.1995 30 1 3.1942 1.3534 -0.1995 31 1 1.6414 2.0076 -0.7732 32 1 1.9599 1.8734 0.9728 33 1 1.4945 -1.1068 1.9157 34 1 3.1591 -0.6485 1.3496 35 1 1.1575 -2.6019 0.0035 36 1 3.4592 -3.3801 0.9946 37 1 4.2074 -2.3616 -0.2589 38 1 2.9555 -3.6481 -1.8972 39 1 4.7218 -5.0080 -0.0017 40 1 5.6656 -3.3358 -1.5918 41 1 4.9792 -4.2581 -2.9514 42 1 7.0618 -5.2443 -0.9476 43 1 7.3298 -4.8884 -2.6721 44 1 6.4737 -9.3223 -2.7757 45 1 5.2761 -8.6609 -3.9145 46 1 8.3623 -11.9656 -7.6918 47 1 4.8301 -8.1842 -1.9629 48 1 5.4350 -7.3949 -0.4852 49 1 3.5029 -6.2062 -2.5309 50 1 3.1139 -6.7005 -0.8655 51 1 3.1575 -0.6532 -1.3517 52 1 1.4923 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199395080.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:15 Heat of formation + Delta-G solvation = -53.992987 kcal Electronic energy + Delta-G solvation = -27042.140721 eV Core-core repulsion = 23359.590021 eV Total energy + Delta-G solvation = -3682.550699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24787 -40.69025 -38.87886 -36.28473 -34.58693 -33.25568 -32.45823 -31.14450 -30.04843 -28.28127 -27.68357 -26.77401 -26.55493 -24.38839 -24.19463 -22.01170 -21.45438 -20.36160 -19.51056 -19.13295 -18.22010 -16.96561 -16.89832 -16.86572 -16.52222 -16.16534 -15.87063 -15.65595 -15.42896 -15.07270 -14.98694 -14.80436 -14.53033 -14.41857 -14.29175 -13.80564 -13.62454 -13.56066 -13.36942 -13.23855 -13.16440 -12.89838 -12.87817 -12.68160 -12.60984 -12.57286 -12.27539 -12.22382 -11.89972 -11.71707 -11.61261 -11.52229 -11.36028 -11.14352 -10.90682 -10.88033 -10.70703 -10.26776 -9.73535 -9.28912 -8.67958 -8.34657 -6.13308 1.25415 1.42735 1.45877 1.55651 1.56849 2.10183 2.27389 2.99508 3.10715 3.25754 3.61249 3.63086 3.74047 3.80446 3.81370 3.90191 3.93109 4.07500 4.19127 4.24787 4.28889 4.33548 4.43021 4.47851 4.51764 4.55024 4.63377 4.71850 4.75720 4.78357 4.81068 4.86953 4.89047 4.91873 4.94849 5.00577 5.01972 5.05708 5.07533 5.14919 5.19794 5.29905 5.30068 5.35913 5.41680 5.57824 5.59209 5.69973 6.14775 6.19687 6.27386 6.46962 7.06457 7.12967 8.74646 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.001720 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.097260 B =16270.871542 C =16659.586998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.102 4.102 6 C 0.072 3.928 7 N -0.684 5.684 8 C 0.096 3.904 9 C -0.150 4.150 10 C 0.113 3.887 11 N -0.606 5.606 12 C 0.532 3.468 13 O -0.569 6.569 14 C -0.123 4.123 15 S -0.154 6.154 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.257 1.257 24 C 0.101 3.899 25 C -0.114 4.114 26 C -0.131 4.131 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.341 0.659 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.054 0.946 50 H 0.097 0.903 51 H 0.076 0.924 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.301 21.845 20.627 34.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.160 4.160 5 C -0.120 4.120 6 C -0.057 4.057 7 N -0.314 5.314 8 C -0.014 4.014 9 C -0.190 4.190 10 C -0.010 4.010 11 N -0.340 5.340 12 C 0.320 3.680 13 O -0.448 6.448 14 C -0.274 4.274 15 S 0.074 5.926 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.181 1.181 24 C -0.021 4.021 25 C -0.153 4.153 26 C -0.169 4.169 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.159 0.841 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.073 0.927 50 H 0.116 0.884 51 H 0.095 0.905 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.260 22.202 20.025 33.568 hybrid contribution -0.297 -0.907 -0.451 1.055 sum -15.557 21.296 19.574 32.843 Atomic orbital electron populations 1.21591 0.92982 1.01911 1.02021 1.21822 0.95756 0.94519 0.97038 1.21727 1.00350 0.95392 1.01815 1.23042 1.01230 0.95289 0.96473 1.22449 0.98662 0.93875 0.97029 1.21973 0.96138 0.91444 0.96146 1.60616 1.38015 1.20942 1.11786 1.21556 0.88549 0.92520 0.98790 1.22614 0.96367 0.99283 1.00771 1.21581 0.97246 0.80701 1.01432 1.48130 1.37197 1.16066 1.32630 1.20148 0.81379 0.87073 0.79430 1.90667 1.32125 1.69700 1.52326 1.23368 1.04529 0.96168 1.03350 1.85589 1.50205 1.17464 1.39378 1.23198 1.24043 1.00427 1.21692 0.89859 1.26137 0.95185 1.03661 0.94140 1.70187 1.27128 1.38430 1.19037 0.84946 0.77893 0.75945 0.79150 1.19307 1.20288 1.18093 1.22048 0.86186 0.97035 0.96868 1.21829 0.96918 0.94408 1.02145 1.23194 1.00764 0.96221 0.96675 0.92050 0.92428 0.92522 0.92720 0.92729 0.92288 0.91257 0.89940 0.89107 0.90938 0.95025 0.84076 0.89307 0.89536 0.92735 0.89597 0.91585 0.87389 0.87570 0.91997 0.89285 0.88905 0.92703 0.88414 0.90527 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.07 71.98 0.65 -0.55 16 2 C -0.09 -0.91 1.39 -51.59 -0.07 -0.98 16 3 C -0.14 -1.28 9.20 71.98 0.66 -0.62 16 4 C -0.12 -1.17 6.79 31.12 0.21 -0.96 16 5 C -0.10 -1.08 3.54 -10.27 -0.04 -1.11 16 6 C 0.07 0.81 5.31 86.30 0.46 1.27 16 7 N -0.68 -9.13 6.25 -490.89 -3.07 -12.20 16 8 C 0.10 1.38 2.43 45.04 0.11 1.49 16 9 C -0.15 -2.59 5.36 30.78 0.16 -2.43 16 10 C 0.11 2.60 6.42 86.36 0.55 3.16 16 11 N -0.61 -16.54 2.97 -818.91 -2.43 -18.97 16 12 C 0.53 20.63 7.72 87.66 0.68 21.31 16 13 O -0.57 -27.40 15.27 -3.03 -0.05 -27.45 16 14 C -0.12 -5.03 4.50 71.24 0.32 -4.71 16 15 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 16 C -0.55 -31.40 9.50 67.96 0.65 -30.76 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.77 5.49 84.86 0.47 1.24 16 19 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 20 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 C 0.10 1.95 6.34 86.36 0.55 2.50 16 25 C -0.11 -1.85 5.69 30.67 0.17 -1.68 16 26 C -0.13 -1.43 6.76 31.18 0.21 -1.22 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.56 7.34 -2.39 -0.02 0.54 16 30 H 0.05 0.52 7.96 -2.39 -0.02 0.50 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.64 8.10 -2.38 -0.02 0.62 16 34 H 0.08 0.76 8.06 -2.39 -0.02 0.74 16 35 H 0.09 1.12 7.66 -2.39 -0.02 1.10 16 36 H 0.07 0.82 8.06 -2.38 -0.02 0.80 16 37 H 0.03 0.36 7.15 -2.39 -0.02 0.34 16 38 H 0.34 4.77 8.48 -89.69 -0.76 4.01 16 39 H 0.09 1.15 7.80 -2.39 -0.02 1.13 16 40 H 0.09 1.23 7.43 -2.39 -0.02 1.21 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.91 7.00 -2.39 -0.02 1.89 16 44 H 0.11 3.98 7.94 -2.39 -0.02 3.96 16 45 H 0.11 3.95 7.69 -2.40 -0.02 3.94 16 46 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 47 H 0.09 1.80 5.93 -2.39 -0.01 1.78 16 48 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 51 H 0.08 0.87 7.75 -2.39 -0.02 0.85 16 52 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 Total: -1.00 -74.05 416.52 1.47 -72.58 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.12 Total: 20.28 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 5.75 Total: -14.06 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -5.22 Total: -87.25 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -74.05 1.47 -72.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199395080.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.590 kcal (2) G-P(sol) polarization free energy of solvation -74.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds