Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46901 * 109.47251 * 180.02562 * 5 4 2 7 7 C 1.46904 * 110.99756 * 180.02562 * 6 5 4 8 8 H 1.09004 * 112.88621 * 333.15292 * 7 6 5 9 9 C 1.53943 * 113.66202 * 104.50481 * 7 6 5 10 10 C 1.53953 * 87.29320 * 139.20550 * 9 7 6 11 11 H 1.09007 * 113.65868 * 220.79109 * 10 9 7 12 12 N 1.46504 * 113.66471 * 89.73614 * 10 9 7 13 13 C 1.34779 * 119.99909 * 104.50497 * 12 10 9 14 14 O 1.21281 * 119.99800 * 359.97438 * 13 12 10 15 15 C 1.50700 * 119.99712 * 180.02562 * 13 12 10 16 16 S 1.80999 * 109.46915 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99832 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00076 * 359.97438 * 17 16 15 19 19 C 1.38794 * 119.99854 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47085 * 89.99665 * 21 19 17 23 23 H 1.48496 * 109.47021 * 209.99588 * 21 19 17 24 24 H 1.48499 * 109.47278 * 330.00137 * 21 19 17 25 25 C 1.52906 * 86.78258 * 335.26195 * 10 9 7 26 26 C 1.52899 * 121.13784 * 150.62832 * 25 10 9 27 27 C 1.53946 * 86.78633 * 100.81049 * 26 25 10 28 28 C 1.52914 * 121.13236 * 259.18519 * 25 10 9 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 37 37 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 38 38 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 39 39 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 40 40 H 1.00898 * 111.00315 * 56.04456 * 6 5 4 41 41 H 1.09001 * 113.57898 * 253.80112 * 9 7 6 42 42 H 1.08992 * 113.58408 * 24.52383 * 9 7 6 43 43 H 0.96993 * 119.99780 * 284.50254 * 12 10 9 44 44 H 1.09003 * 109.46978 * 299.99938 * 15 13 12 45 45 H 1.08994 * 109.47461 * 59.99851 * 15 13 12 46 46 H 0.96995 * 119.99728 * 180.02562 * 20 19 17 47 47 H 1.09002 * 113.66360 * 215.28781 * 26 25 10 48 48 H 1.09005 * 113.66136 * 346.34107 * 26 25 10 49 49 H 1.08995 * 113.58391 * 270.13373 * 27 26 25 50 50 H 1.09009 * 113.65288 * 139.34899 * 27 26 25 51 51 H 1.08990 * 113.66547 * 13.65640 * 28 25 10 52 52 H 1.08996 * 113.66034 * 144.71114 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 7 4.0544 -1.5230 -2.3879 7 6 5.5180 -1.6475 -2.3633 8 1 6.0005 -0.8626 -1.7808 9 6 6.0118 -3.0644 -2.0193 10 6 7.0873 -2.8740 -3.1043 11 1 7.2551 -3.7616 -3.7145 12 7 8.3302 -2.2822 -2.6029 13 6 9.4196 -3.0549 -2.4224 14 8 9.3708 -4.2402 -2.6747 15 6 10.6979 -2.4463 -1.9060 16 16 11.9665 -3.7304 -1.7723 17 6 13.3123 -2.7687 -1.1651 18 1 13.1852 -1.7101 -0.9928 19 6 14.5361 -3.3714 -0.9093 20 7 14.6912 -4.6615 -1.1198 21 14 15.9632 -2.3518 -0.2663 22 1 15.9369 -2.3446 1.2185 23 1 17.2431 -2.9402 -0.7359 24 1 15.8437 -0.9600 -0.7701 25 6 6.1391 -1.8595 -3.7444 26 6 6.6743 -0.6821 -4.5599 27 6 6.3186 -1.5011 -5.8140 28 6 5.2766 -2.2347 -4.9501 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 3.1301 1.4425 0.0005 36 1 1.6053 -1.7198 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 3.9994 0.1675 -1.1421 39 1 3.8531 -1.3940 -0.3003 40 1 3.7450 -1.0553 -3.2267 41 1 6.4194 -3.1516 -1.0122 42 1 5.2894 -3.8465 -2.2523 43 1 8.3690 -1.3344 -2.4009 44 1 11.0355 -1.6717 -2.5946 45 1 10.5207 -2.0074 -0.9242 46 1 15.5464 -5.0827 -0.9407 47 1 6.0859 0.2290 -4.4510 48 1 7.7442 -0.5145 -4.4359 49 1 7.1285 -2.1434 -6.1596 50 1 5.8798 -0.9061 -6.6150 51 1 5.2299 -3.3073 -5.1377 52 1 4.2955 -1.7600 -4.9508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202521141.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = -35.947048 kcal Electronic energy + Delta-G solvation = -27203.581426 eV Core-core repulsion = 23521.813257 eV Total energy + Delta-G solvation = -3681.768169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12403 -40.08940 -38.14028 -36.36505 -35.37054 -34.59103 -33.37154 -30.70922 -29.08840 -28.00073 -27.67441 -26.75310 -25.59810 -24.76202 -23.06720 -22.20913 -21.39370 -20.82964 -19.94549 -19.04375 -17.94890 -17.36650 -17.05635 -16.88536 -16.44076 -16.43071 -16.24017 -16.00976 -15.63494 -15.41285 -14.70342 -14.68025 -14.46914 -14.22435 -13.97466 -13.93826 -13.58669 -13.29234 -13.17383 -13.10463 -12.96475 -12.89579 -12.87803 -12.76863 -12.60140 -12.48638 -12.24661 -12.02130 -11.74972 -11.61778 -11.55262 -11.44259 -11.28159 -11.14984 -10.99027 -10.94661 -10.83785 -10.28672 -10.03789 -9.31329 -8.67606 -8.35206 -6.13512 1.25081 1.41962 1.45646 1.56240 1.57253 2.17983 2.26871 2.98891 3.13168 3.30433 3.32019 3.51708 3.70666 3.79951 3.89086 3.93896 3.97184 3.98311 4.06483 4.16410 4.28276 4.35850 4.42691 4.47911 4.50206 4.62338 4.63539 4.74454 4.78041 4.82668 4.84238 4.85864 4.93143 4.97517 5.01882 5.02960 5.04873 5.10720 5.15234 5.19316 5.20635 5.36517 5.41155 5.45649 5.50053 5.50741 5.53873 5.56278 6.15546 6.19186 6.47271 6.53296 7.05977 7.21978 8.74002 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.002025 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.645261 B =13823.062584 C =14861.251035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.104 4.104 5 C 0.059 3.941 6 N -0.675 5.675 7 C 0.088 3.912 8 H 0.076 0.924 9 C -0.135 4.135 10 C 0.137 3.863 11 H 0.076 0.924 12 N -0.693 5.693 13 C 0.538 3.462 14 O -0.564 6.564 15 C -0.129 4.129 16 S -0.150 6.150 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.258 1.258 25 C -0.099 4.099 26 C -0.126 4.126 27 C -0.141 4.141 28 C -0.097 4.097 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.348 0.652 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.413 0.587 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.101 0.899 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.063 0.937 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.908 15.850 -3.488 33.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.142 4.142 5 C -0.070 4.070 6 N -0.307 5.307 7 C -0.022 4.022 8 H 0.093 0.907 9 C -0.175 4.175 10 C 0.031 3.969 11 H 0.094 0.906 12 N -0.345 5.345 13 C 0.324 3.676 14 O -0.441 6.441 15 C -0.280 4.280 16 S 0.077 5.923 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.182 1.182 25 C -0.101 4.101 26 C -0.164 4.164 27 C -0.178 4.178 28 C -0.135 4.135 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.169 0.831 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.251 0.749 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.102 0.898 51 H 0.082 0.918 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -29.006 13.131 -3.654 32.049 hybrid contribution 1.532 2.453 0.727 2.982 sum -27.474 15.583 -2.927 31.721 Atomic orbital electron populations 1.21817 0.94713 1.01798 1.01971 1.21086 0.96137 0.96378 0.98022 1.21890 1.00951 0.95786 1.01922 1.21538 0.93997 1.00694 0.97973 1.22064 0.95638 0.96168 0.93159 1.60521 1.08753 1.56153 1.05293 1.22676 0.87993 0.95925 0.95603 0.90662 1.23471 0.97059 0.98889 0.98036 1.21472 0.82646 0.96496 0.96274 0.90582 1.45336 1.09698 1.12475 1.67006 1.20069 0.84684 0.86291 0.76585 1.90693 1.84578 1.17459 1.51415 1.23362 0.95747 1.03520 1.05369 1.85600 1.05927 1.14355 1.86382 1.23206 0.98022 0.97350 1.50873 0.89887 1.26135 1.01441 0.96492 0.95110 1.70185 1.26136 1.11651 1.46767 0.84949 0.76166 0.78307 0.78525 1.19317 1.20281 1.18165 1.22975 0.96487 0.96840 0.93787 1.22778 1.01327 0.96790 0.95487 1.22815 0.98921 0.99058 0.97050 1.22516 0.97951 1.00933 0.92066 0.92387 0.92766 0.92541 0.91840 0.92399 0.92693 0.92805 0.91868 0.91461 0.94549 0.92423 0.83131 0.92769 0.88805 0.74950 0.87172 0.87257 0.91990 0.88032 0.91822 0.91850 0.89810 0.91817 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 71.98 0.66 -0.67 16 2 C -0.10 -0.99 2.92 -10.79 -0.03 -1.02 16 3 C -0.15 -1.40 8.95 71.98 0.64 -0.76 16 4 C -0.10 -1.10 4.94 30.59 0.15 -0.95 16 5 C 0.06 0.73 5.31 86.30 0.46 1.19 16 6 N -0.67 -8.91 6.28 -490.05 -3.08 -11.98 16 7 C 0.09 1.39 3.91 45.20 0.18 1.57 16 8 H 0.08 1.16 7.90 -2.39 -0.02 1.14 16 9 C -0.13 -2.96 7.68 31.23 0.24 -2.72 16 10 C 0.14 3.31 4.08 45.28 0.18 3.49 16 11 H 0.08 2.29 7.55 -2.38 -0.02 2.27 16 12 N -0.69 -18.09 4.86 -441.13 -2.15 -20.24 16 13 C 0.54 20.20 7.85 87.66 0.69 20.89 16 14 O -0.56 -26.73 15.51 -3.03 -0.05 -26.78 16 15 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 16 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 17 C -0.55 -31.34 9.50 67.95 0.65 -30.70 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.74 5.49 84.86 0.47 1.21 16 20 N -0.91 -56.25 13.22 21.65 0.29 -55.97 16 21 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 C -0.10 -1.59 0.84 -52.32 -0.04 -1.64 16 26 C -0.13 -1.73 7.59 30.88 0.23 -1.50 16 27 C -0.14 -2.02 8.08 31.23 0.25 -1.77 16 28 C -0.10 -1.34 7.38 30.89 0.23 -1.11 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.54 6.57 -2.39 -0.02 0.52 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.04 0.43 6.55 -2.39 -0.02 0.41 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.35 3.58 7.04 -89.70 -0.63 2.95 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.41 8.13 8.27 -92.71 -0.77 7.36 16 44 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 46 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 47 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.01 7.51 -2.38 -0.02 1.00 16 49 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 51 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.11 1.06 6.76 -2.39 -0.02 1.05 16 Total: -1.00 -73.79 423.85 0.77 -73.02 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.50 Total: 24.97 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 5.39 Total: -19.18 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -4.93 Total: -88.19 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -73.79 0.77 -73.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202521141.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.071 kcal (2) G-P(sol) polarization free energy of solvation -73.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds