Wall clock time and date at job start Sat Apr 11 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47423 * 2 1 4 4 C 1.53003 * 109.46822 * 119.99610 * 2 1 3 5 5 C 1.53003 * 109.46731 * 174.99850 * 4 2 1 6 6 N 1.46905 * 109.47025 * 180.02562 * 5 4 2 7 7 C 1.46898 * 111.00245 * 180.02562 * 6 5 4 8 8 H 1.09003 * 112.94705 * 23.59053 * 7 6 5 9 9 C 1.53953 * 113.66096 * 252.19269 * 7 6 5 10 10 C 1.53952 * 87.29058 * 220.79104 * 9 7 6 11 11 H 1.09006 * 113.74692 * 139.21731 * 10 9 7 12 12 N 1.46499 * 113.66030 * 270.25790 * 10 9 7 13 13 C 1.34781 * 119.99977 * 252.18568 * 12 10 9 14 14 O 1.21287 * 119.99946 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00061 * 180.02562 * 13 12 10 16 16 S 1.80993 * 109.47080 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00046 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00358 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00465 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46876 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47271 * 120.00098 * 21 19 17 24 24 H 1.48496 * 109.47733 * 240.00484 * 21 19 17 25 25 C 1.52901 * 113.66487 * 155.00103 * 7 6 5 26 26 C 1.52913 * 121.14004 * 13.65694 * 25 7 6 27 27 C 1.53952 * 86.78179 * 209.37105 * 26 25 7 28 28 C 1.53068 * 121.18245 * 265.01684 * 25 7 6 29 29 H 1.09007 * 109.47291 * 300.00348 * 1 2 3 30 30 H 1.09006 * 109.47035 * 59.99831 * 1 2 3 31 31 H 1.08995 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47248 * 239.99746 * 2 1 3 33 33 H 1.08995 * 109.47662 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46712 * 300.00344 * 3 2 1 35 35 H 1.09007 * 109.47171 * 59.99578 * 3 2 1 36 36 H 1.08999 * 109.46892 * 55.00505 * 4 2 1 37 37 H 1.08993 * 109.47343 * 295.00003 * 4 2 1 38 38 H 1.08999 * 109.46898 * 60.00659 * 5 4 2 39 39 H 1.08993 * 109.47332 * 300.00160 * 5 4 2 40 40 H 1.00901 * 110.99785 * 56.04992 * 6 5 4 41 41 H 1.08996 * 113.58380 * 106.18520 * 9 7 6 42 42 H 1.09005 * 113.65067 * 335.40302 * 9 7 6 43 43 H 0.96992 * 120.00049 * 72.19462 * 12 10 9 44 44 H 1.08996 * 109.46797 * 300.00452 * 15 13 12 45 45 H 1.09001 * 109.47034 * 60.00048 * 15 13 12 46 46 H 0.96996 * 120.00444 * 179.97438 * 20 19 17 47 47 H 1.08992 * 113.66596 * 94.89573 * 26 25 7 48 48 H 1.09003 * 113.74044 * 323.85238 * 26 25 7 49 49 H 1.09002 * 113.58142 * 139.33940 * 27 26 25 50 50 H 1.09004 * 113.57653 * 270.05541 * 27 26 25 51 51 H 1.09010 * 113.66093 * 36.15047 * 28 25 7 52 52 H 1.08996 * 113.71306 * 265.05284 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0544 -1.5240 2.3873 7 6 5.5180 -1.6475 2.3633 8 1 5.9977 -0.8958 1.7364 9 6 6.0128 -3.0809 2.0974 10 6 7.0926 -2.8281 3.1651 11 1 7.2659 -3.6788 3.8243 12 7 8.3322 -2.2638 2.6255 13 6 9.4411 -3.0259 2.5462 14 8 9.4125 -4.1790 2.9210 15 6 10.7164 -2.4452 1.9916 16 16 12.0140 -3.7067 2.0154 17 6 13.3513 -2.7830 1.3349 18 1 13.2054 -1.7514 1.0505 19 6 14.5923 -3.3808 1.1652 20 7 14.7702 -4.6381 1.5122 21 14 16.0098 -2.4018 0.4430 22 1 15.5534 -1.0221 0.1373 23 1 17.1244 -2.3483 1.4229 24 1 16.4787 -3.0564 -0.8047 25 6 6.1455 -1.7804 3.7512 26 6 5.2891 -2.0883 4.9801 27 6 6.3336 -1.3057 5.7965 28 6 6.6848 -0.5577 4.4976 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6053 -1.7197 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 3.9994 0.1675 1.1421 39 1 3.8531 -1.3939 0.3004 40 1 3.6166 -2.4276 2.4868 41 1 6.4159 -3.2242 1.0949 42 1 5.2939 -3.8508 2.3780 43 1 8.3550 -1.3417 2.3256 44 1 10.5496 -2.1152 0.9663 45 1 11.0239 -1.5955 2.6012 46 1 15.6374 -5.0560 1.3933 47 1 5.2449 -3.1487 5.2280 48 1 4.3067 -1.6164 4.9597 49 1 5.8974 -0.6660 6.5638 50 1 7.1456 -1.9267 6.1751 51 1 6.0956 0.3459 4.3401 52 1 7.7541 -0.3970 4.3606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202521144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:31 Heat of formation + Delta-G solvation = -16.871280 kcal Electronic energy + Delta-G solvation = -27194.254179 eV Core-core repulsion = 23513.313198 eV Total energy + Delta-G solvation = -3680.940981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16013 -38.65913 -37.62300 -35.66469 -34.36294 -32.43757 -32.24829 -29.35312 -28.22240 -27.56194 -25.93778 -25.50522 -24.76772 -23.87424 -22.50467 -21.27807 -20.35155 -20.18996 -18.49388 -17.69226 -16.52835 -16.24182 -16.05220 -15.75777 -15.52182 -15.05706 -14.81238 -14.80658 -14.62226 -14.26517 -14.03057 -13.69963 -13.18351 -13.11073 -12.87719 -12.76168 -12.65720 -12.53003 -12.41686 -12.24171 -12.07244 -11.93298 -11.87362 -11.73738 -11.20552 -11.09256 -11.07683 -11.02885 -11.02510 -10.88242 -10.77234 -10.46663 -10.18942 -10.06937 -9.80263 -9.41092 -9.08290 -8.86414 -8.55620 -8.23840 -6.50536 -6.22422 -3.92873 2.98685 3.05926 3.20998 3.27151 3.31582 3.64545 3.79545 4.19620 4.22084 4.36277 4.45988 4.48928 4.55534 4.60222 4.69971 4.72262 4.76836 4.97977 5.08085 5.11018 5.12881 5.18755 5.23491 5.26400 5.31226 5.37295 5.42666 5.46782 5.52571 5.56564 5.60027 5.65076 5.69286 5.71025 5.73226 5.79147 5.81629 5.84387 5.87574 5.90662 5.94875 5.99339 6.02258 6.12969 6.29512 6.35717 6.66203 6.82251 7.10310 7.59322 7.71472 8.34827 8.60911 9.23074 10.85061 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.002010 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.987730 B =13929.727440 C =14918.449425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.112 4.112 5 C 0.056 3.944 6 N -0.674 5.674 7 C 0.081 3.919 8 H 0.095 0.905 9 C -0.178 4.178 10 C 0.151 3.849 11 H 0.103 0.897 12 N -0.718 5.718 13 C 0.535 3.465 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.102 4.102 26 C -0.100 4.100 27 C -0.141 4.141 28 C -0.124 4.124 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.342 0.658 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.064 0.936 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.086 11.314 1.188 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.073 4.073 6 N -0.304 5.304 7 C -0.029 4.029 8 H 0.113 0.887 9 C -0.219 4.219 10 C 0.044 3.956 11 H 0.121 0.879 12 N -0.371 5.371 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.103 4.103 26 C -0.138 4.138 27 C -0.178 4.178 28 C -0.162 4.162 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.160 0.840 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.232 0.768 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.101 0.899 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.997 9.804 2.205 29.746 hybrid contribution 1.124 1.688 -1.831 2.732 sum -26.873 11.492 0.374 29.230 Atomic orbital electron populations 1.21832 0.95186 1.01664 1.01741 1.21093 0.95738 0.96501 0.98270 1.21894 1.01205 0.95858 1.01674 1.21621 0.94705 1.00582 0.98107 1.22077 0.95211 0.99061 0.90950 1.60360 1.04973 1.25814 1.39228 1.22873 0.87513 0.95977 0.96545 0.88727 1.24124 0.99429 0.97809 1.00535 1.21305 0.82913 0.96313 0.95040 0.87863 1.45632 1.09677 1.15530 1.66274 1.20327 0.84036 0.86078 0.77438 1.90701 1.84350 1.17173 1.46722 1.23530 0.97532 1.05926 1.03401 1.85404 1.00984 1.13670 1.83234 1.22910 0.96859 1.00205 1.48366 0.90879 1.24994 0.98216 0.95174 0.95225 1.70027 1.24217 1.11137 1.44889 0.86116 0.81006 0.79666 0.78699 1.19623 1.20552 1.20570 1.23058 0.96607 0.96790 0.93886 1.22447 0.98023 1.00262 0.93046 1.22827 0.99267 0.99263 0.96493 1.22671 1.00939 0.96583 0.95977 0.92659 0.92775 0.92775 0.91391 0.92454 0.92912 0.92619 0.92207 0.91097 0.90875 0.95374 0.83955 0.90979 0.89282 0.76842 0.89271 0.89194 0.92232 0.91783 0.88622 0.91698 0.90323 0.89891 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 2 C -0.10 -0.55 2.92 -90.62 -0.26 -0.82 16 3 C -0.15 -0.84 8.95 37.16 0.33 -0.51 16 4 C -0.11 -0.67 4.94 -26.73 -0.13 -0.81 16 5 C 0.06 0.39 5.29 -3.82 -0.02 0.36 16 6 N -0.67 -4.98 5.83 -106.25 -0.62 -5.60 16 7 C 0.08 0.69 3.98 -67.27 -0.27 0.43 16 8 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 9 C -0.18 -1.80 7.50 -25.75 -0.19 -1.99 16 10 C 0.15 1.81 4.12 -67.48 -0.28 1.53 16 11 H 0.10 1.48 7.46 -51.93 -0.39 1.09 16 12 N -0.72 -9.60 4.80 -53.37 -0.26 -9.85 16 13 C 0.53 9.94 7.85 -10.98 -0.09 9.85 16 14 O -0.52 -11.70 15.46 5.55 0.09 -11.62 16 15 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 C -0.10 -0.94 0.92 -154.63 -0.14 -1.08 16 26 C -0.10 -0.86 7.44 -26.28 -0.20 -1.06 16 27 C -0.14 -1.29 8.08 -25.75 -0.21 -1.50 16 28 C -0.12 -1.14 7.63 -26.20 -0.20 -1.34 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 39 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.34 2.38 8.19 -39.29 -0.32 2.06 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.82 7.82 -51.93 -0.41 0.41 16 43 H 0.40 4.31 8.42 -40.82 -0.34 3.97 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.10 0.79 7.77 -51.93 -0.40 0.39 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 52 H 0.07 0.68 7.59 -51.93 -0.39 0.28 16 LS Contribution 425.34 15.07 6.41 6.41 Total: -1.00 -32.68 425.34 -11.43 -44.11 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -9.66 Total: 2.63 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.89 Total: -13.20 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.14 Total: -40.91 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -32.68 -11.43 -44.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202521144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.237 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds