Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47423 * 2 1 4 4 C 1.53003 * 109.46822 * 119.99610 * 2 1 3 5 5 C 1.53003 * 109.46731 * 174.99850 * 4 2 1 6 6 N 1.46905 * 109.47025 * 180.02562 * 5 4 2 7 7 C 1.46898 * 111.00245 * 180.02562 * 6 5 4 8 8 H 1.09003 * 112.94705 * 23.59053 * 7 6 5 9 9 C 1.53953 * 113.66096 * 252.19269 * 7 6 5 10 10 C 1.53952 * 87.29058 * 220.79104 * 9 7 6 11 11 H 1.09006 * 113.74692 * 139.21731 * 10 9 7 12 12 N 1.46499 * 113.66030 * 270.25790 * 10 9 7 13 13 C 1.34781 * 119.99977 * 252.18568 * 12 10 9 14 14 O 1.21287 * 119.99946 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00061 * 180.02562 * 13 12 10 16 16 S 1.80993 * 109.47080 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00046 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00358 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00465 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46876 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47271 * 120.00098 * 21 19 17 24 24 H 1.48496 * 109.47733 * 240.00484 * 21 19 17 25 25 C 1.52901 * 113.66487 * 155.00103 * 7 6 5 26 26 C 1.52913 * 121.14004 * 13.65694 * 25 7 6 27 27 C 1.53952 * 86.78179 * 209.37105 * 26 25 7 28 28 C 1.53068 * 121.18245 * 265.01684 * 25 7 6 29 29 H 1.09007 * 109.47291 * 300.00348 * 1 2 3 30 30 H 1.09006 * 109.47035 * 59.99831 * 1 2 3 31 31 H 1.08995 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47248 * 239.99746 * 2 1 3 33 33 H 1.08995 * 109.47662 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46712 * 300.00344 * 3 2 1 35 35 H 1.09007 * 109.47171 * 59.99578 * 3 2 1 36 36 H 1.08999 * 109.46892 * 55.00505 * 4 2 1 37 37 H 1.08993 * 109.47343 * 295.00003 * 4 2 1 38 38 H 1.08999 * 109.46898 * 60.00659 * 5 4 2 39 39 H 1.08993 * 109.47332 * 300.00160 * 5 4 2 40 40 H 1.00901 * 110.99785 * 56.04992 * 6 5 4 41 41 H 1.08996 * 113.58380 * 106.18520 * 9 7 6 42 42 H 1.09005 * 113.65067 * 335.40302 * 9 7 6 43 43 H 0.96992 * 120.00049 * 72.19462 * 12 10 9 44 44 H 1.08996 * 109.46797 * 300.00452 * 15 13 12 45 45 H 1.09001 * 109.47034 * 60.00048 * 15 13 12 46 46 H 0.96996 * 120.00444 * 179.97438 * 20 19 17 47 47 H 1.08992 * 113.66596 * 94.89573 * 26 25 7 48 48 H 1.09003 * 113.74044 * 323.85238 * 26 25 7 49 49 H 1.09002 * 113.58142 * 139.33940 * 27 26 25 50 50 H 1.09004 * 113.57653 * 270.05541 * 27 26 25 51 51 H 1.09010 * 113.66093 * 36.15047 * 28 25 7 52 52 H 1.08996 * 113.71306 * 265.05284 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0544 -1.5240 2.3873 7 6 5.5180 -1.6475 2.3633 8 1 5.9977 -0.8958 1.7364 9 6 6.0128 -3.0809 2.0974 10 6 7.0926 -2.8281 3.1651 11 1 7.2659 -3.6788 3.8243 12 7 8.3322 -2.2638 2.6255 13 6 9.4411 -3.0259 2.5462 14 8 9.4125 -4.1790 2.9210 15 6 10.7164 -2.4452 1.9916 16 16 12.0140 -3.7067 2.0154 17 6 13.3513 -2.7830 1.3349 18 1 13.2054 -1.7514 1.0505 19 6 14.5923 -3.3808 1.1652 20 7 14.7702 -4.6381 1.5122 21 14 16.0098 -2.4018 0.4430 22 1 15.5534 -1.0221 0.1373 23 1 17.1244 -2.3483 1.4229 24 1 16.4787 -3.0564 -0.8047 25 6 6.1455 -1.7804 3.7512 26 6 5.2891 -2.0883 4.9801 27 6 6.3336 -1.3057 5.7965 28 6 6.6848 -0.5577 4.4976 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6053 -1.7197 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 3.9994 0.1675 1.1421 39 1 3.8531 -1.3939 0.3004 40 1 3.6166 -2.4276 2.4868 41 1 6.4159 -3.2242 1.0949 42 1 5.2939 -3.8508 2.3780 43 1 8.3550 -1.3417 2.3256 44 1 10.5496 -2.1152 0.9663 45 1 11.0239 -1.5955 2.6012 46 1 15.6374 -5.0560 1.3933 47 1 5.2449 -3.1487 5.2280 48 1 4.3067 -1.6164 4.9597 49 1 5.8974 -0.6660 6.5638 50 1 7.1456 -1.9267 6.1751 51 1 6.0956 0.3459 4.3401 52 1 7.7541 -0.3970 4.3606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202521144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -36.723679 kcal Electronic energy + Delta-G solvation = -27195.115043 eV Core-core repulsion = 23513.313198 eV Total energy + Delta-G solvation = -3681.801846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.06850 -40.06186 -38.14322 -36.42158 -35.33813 -34.59489 -33.29150 -30.71514 -28.98534 -27.98755 -27.67789 -26.68434 -25.55190 -24.73964 -23.10764 -22.26080 -21.44025 -20.79468 -19.96732 -19.13497 -17.93590 -17.09274 -16.91685 -16.89053 -16.61092 -16.35788 -16.12492 -15.95479 -15.69493 -15.17842 -14.85273 -14.69289 -14.50500 -14.27691 -14.00855 -13.85426 -13.32799 -13.30369 -13.17583 -13.16863 -12.99260 -12.92466 -12.89351 -12.74858 -12.63027 -12.54707 -12.30528 -11.95568 -11.73181 -11.60837 -11.47791 -11.42312 -11.24889 -11.16905 -11.03049 -10.92077 -10.84204 -10.28731 -10.03466 -9.22024 -8.67938 -8.35847 -6.13968 1.25071 1.40639 1.45532 1.56519 1.57037 2.18633 2.26420 2.98408 3.14055 3.29974 3.37888 3.58280 3.73291 3.83671 3.91646 3.94446 3.99521 4.03542 4.07431 4.15897 4.28062 4.43566 4.46516 4.48029 4.56644 4.58218 4.63212 4.75390 4.78293 4.82601 4.86194 4.90035 4.91748 4.99284 5.02263 5.04018 5.09443 5.12951 5.17349 5.19959 5.21296 5.36930 5.41211 5.49539 5.51103 5.54684 5.57130 5.61927 6.15263 6.19070 6.46423 6.52165 7.05589 7.21643 8.73638 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.002010 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.987730 B =13929.727440 C =14918.449425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.105 4.105 5 C 0.059 3.941 6 N -0.670 5.670 7 C 0.096 3.904 8 H 0.099 0.901 9 C -0.173 4.173 10 C 0.136 3.864 11 H 0.076 0.924 12 N -0.692 5.692 13 C 0.538 3.462 14 O -0.564 6.564 15 C -0.129 4.129 16 S -0.150 6.150 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.092 4.092 26 C -0.092 4.092 27 C -0.144 4.144 28 C -0.121 4.121 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.346 0.654 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.414 0.586 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.271 0.729 47 H 0.060 0.940 48 H 0.108 0.892 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.096 0.904 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.451 13.952 0.553 32.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.143 4.143 5 C -0.070 4.070 6 N -0.300 5.300 7 C -0.015 4.015 8 H 0.117 0.883 9 C -0.213 4.213 10 C 0.030 3.970 11 H 0.094 0.906 12 N -0.345 5.345 13 C 0.324 3.676 14 O -0.442 6.442 15 C -0.280 4.280 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.094 4.094 26 C -0.130 4.130 27 C -0.182 4.182 28 C -0.158 4.158 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.166 0.834 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.251 0.749 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.126 0.874 49 H 0.095 0.905 50 H 0.080 0.920 51 H 0.115 0.885 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.417 12.490 1.567 31.996 hybrid contribution 1.407 0.884 -1.592 2.302 sum -28.009 13.374 -0.025 31.038 Atomic orbital electron populations 1.21822 0.94793 1.01810 1.01915 1.21086 0.96068 0.96449 0.97953 1.21885 1.01041 0.95831 1.01789 1.21545 0.93999 1.00669 0.98072 1.22067 0.95753 0.98782 0.90402 1.60344 1.04021 1.26130 1.39485 1.22712 0.88372 0.94723 0.95646 0.88322 1.24119 0.98698 0.99517 0.99007 1.21479 0.82720 0.96763 0.96049 0.90597 1.45328 1.08802 1.15704 1.64623 1.20069 0.84726 0.85640 0.77171 1.90691 1.85089 1.19263 1.49177 1.23364 0.95701 1.03723 1.05248 1.85586 1.04502 1.18479 1.83699 1.23240 0.97259 1.00546 1.48335 0.89894 1.26133 1.01378 0.96263 0.95405 1.70188 1.25145 1.13199 1.46238 0.84900 0.76777 0.78442 0.77790 1.18008 1.19916 1.19922 1.22937 0.95790 0.95981 0.94666 1.22437 0.98231 1.00176 0.92168 1.22822 0.99010 0.99355 0.96995 1.22689 1.00649 0.96835 0.95665 0.92556 0.92556 0.92657 0.91734 0.92673 0.92723 0.92606 0.92014 0.91382 0.90946 0.95821 0.83424 0.92118 0.88303 0.74914 0.87229 0.87216 0.91985 0.92117 0.87413 0.90461 0.92043 0.88509 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 71.98 0.66 -0.63 16 2 C -0.10 -0.94 2.92 -10.79 -0.03 -0.97 16 3 C -0.15 -1.43 8.95 71.98 0.64 -0.79 16 4 C -0.10 -1.05 4.94 30.60 0.15 -0.89 16 5 C 0.06 0.68 5.29 86.30 0.46 1.13 16 6 N -0.67 -8.24 5.83 -490.07 -2.86 -11.09 16 7 C 0.10 1.43 3.98 45.20 0.18 1.61 16 8 H 0.10 1.45 7.87 -2.39 -0.02 1.43 16 9 C -0.17 -3.29 7.50 31.23 0.23 -3.06 16 10 C 0.14 3.19 4.12 45.28 0.19 3.38 16 11 H 0.08 2.25 7.46 -2.38 -0.02 2.23 16 12 N -0.69 -17.90 4.80 -441.13 -2.12 -20.02 16 13 C 0.54 20.06 7.85 87.66 0.69 20.75 16 14 O -0.56 -26.54 15.46 -3.05 -0.05 -26.59 16 15 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 16 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 17 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 21 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C -0.09 -1.54 0.92 -52.26 -0.05 -1.59 16 26 C -0.09 -1.43 7.44 30.89 0.23 -1.20 16 27 C -0.14 -2.44 8.08 31.23 0.25 -2.19 16 28 C -0.12 -1.97 7.63 30.94 0.24 -1.73 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.55 6.56 -2.39 -0.02 0.54 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.87 6.56 -2.39 -0.02 0.86 16 39 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.35 3.96 8.19 -89.69 -0.73 3.23 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 1.70 7.82 -2.38 -0.02 1.68 16 43 H 0.41 8.13 8.42 -92.71 -0.78 7.35 16 44 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 46 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.11 1.47 7.77 -2.39 -0.02 1.45 16 49 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 51 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 52 H 0.06 1.08 7.59 -2.39 -0.02 1.07 16 Total: -1.00 -72.88 425.34 0.90 -71.99 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.62 Total: 25.72 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 5.39 Total: -20.31 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -4.69 Total: -87.01 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -72.88 0.90 -71.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202521144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.261 kcal (2) G-P(sol) polarization free energy of solvation -72.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds