Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46886 * 2 1 4 4 C 1.52998 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47348 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.47390 * 179.97438 * 5 4 3 7 7 C 1.46897 * 111.00386 * 180.02562 * 6 5 4 8 8 H 1.09006 * 112.94367 * 26.89978 * 7 6 5 9 9 C 1.53950 * 113.66253 * 255.49940 * 7 6 5 10 10 C 1.53952 * 87.37851 * 220.83117 * 9 7 6 11 11 H 1.09004 * 113.65933 * 270.12700 * 10 9 7 12 12 N 1.46501 * 113.66271 * 139.16614 * 10 9 7 13 13 C 1.34779 * 119.99892 * 104.50320 * 12 10 9 14 14 O 1.21276 * 120.00041 * 0.02562 * 13 12 10 15 15 C 1.50693 * 119.99545 * 179.97438 * 13 12 10 16 16 S 1.81006 * 109.46853 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00108 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99874 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00335 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00206 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99642 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47120 * 89.99854 * 21 19 17 23 23 H 1.48500 * 109.46919 * 209.99758 * 21 19 17 24 24 H 1.48496 * 109.47201 * 329.99334 * 21 19 17 25 25 C 1.52913 * 86.78179 * 24.69389 * 10 9 7 26 26 C 1.52907 * 121.13530 * 209.38624 * 25 10 9 27 27 C 1.53950 * 86.78193 * 209.37968 * 26 25 10 28 28 C 1.52906 * 121.13846 * 100.82243 * 25 10 9 29 29 H 1.08999 * 109.47215 * 60.00523 * 1 2 3 30 30 H 1.08999 * 109.46993 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47103 * 300.00350 * 1 2 3 32 32 H 1.09000 * 109.47103 * 239.99650 * 2 1 3 33 33 H 1.09001 * 109.46728 * 119.99649 * 2 1 3 34 34 H 1.09000 * 109.47536 * 59.99915 * 3 2 1 35 35 H 1.09006 * 109.47572 * 299.99983 * 3 2 1 36 36 H 1.08993 * 109.47678 * 59.99847 * 4 3 2 37 37 H 1.09008 * 109.47111 * 299.99647 * 4 3 2 38 38 H 1.09000 * 109.47332 * 59.99723 * 5 4 3 39 39 H 1.08995 * 109.47106 * 300.00037 * 5 4 3 40 40 H 1.00899 * 110.99527 * 56.04112 * 6 5 4 41 41 H 1.09002 * 113.58302 * 106.18718 * 9 7 6 42 42 H 1.09004 * 113.57731 * 335.46891 * 9 7 6 43 43 H 0.97000 * 119.99912 * 284.49983 * 12 10 9 44 44 H 1.08997 * 109.47831 * 300.00115 * 15 13 12 45 45 H 1.09004 * 109.47216 * 60.00294 * 15 13 12 46 46 H 0.97009 * 120.00302 * 180.02562 * 20 19 17 47 47 H 1.09008 * 113.66358 * 323.84736 * 26 25 10 48 48 H 1.08997 * 113.66794 * 94.90547 * 26 25 10 49 49 H 1.09000 * 113.58006 * 270.12866 * 27 26 25 50 50 H 1.09006 * 113.58155 * 139.33341 * 27 26 25 51 51 H 1.09003 * 113.65932 * 265.08982 * 28 25 10 52 52 H 1.09003 * 113.66131 * 36.14542 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8851 -0.0013 6 7 5.5490 2.8851 -0.0013 7 6 6.0754 4.2565 -0.0013 8 1 5.3920 4.9741 0.4529 9 6 6.6265 4.7068 -1.3664 10 6 7.7829 5.3743 -0.6001 11 1 7.5809 6.4070 -0.3159 12 7 9.0888 5.2051 -1.2421 13 6 9.6516 6.2340 -1.9063 14 8 9.0771 7.3001 -1.9720 15 6 10.9951 6.0601 -2.5662 16 16 11.4778 7.6087 -3.3693 17 6 13.0364 7.1330 -4.0396 18 1 13.4065 6.1299 -3.8866 19 6 13.7880 8.0470 -4.7649 20 7 14.9525 7.6917 -5.2652 21 14 13.1475 9.7816 -5.0300 22 1 13.6112 10.6552 -3.9223 23 1 13.6593 10.3062 -6.3216 24 1 11.6629 9.7624 -5.0571 25 6 7.5121 4.3643 0.5157 26 6 7.8038 4.7042 1.9777 27 6 8.0551 3.1999 2.1869 28 6 8.3851 3.1205 0.6853 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9330 0.9289 -0.8908 37 1 3.9337 0.9286 0.8892 38 1 3.7170 3.3992 0.8887 39 1 3.7163 3.3986 -0.8912 40 1 5.9105 2.3586 -0.7824 41 1 5.9807 5.4154 -1.8852 42 1 6.9444 3.8805 -2.0024 43 1 9.5485 4.3525 -1.1892 44 1 11.7379 5.7945 -1.8140 45 1 10.9338 5.2674 -3.3119 46 1 15.4780 8.3306 -5.7718 47 1 8.6931 5.3195 2.1148 48 1 6.9374 5.0826 2.5202 49 1 7.1608 2.6431 2.4668 50 1 8.9070 2.9857 2.8325 51 1 7.9830 2.2337 0.1953 52 1 9.4378 3.2907 0.4591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202523686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -20.538017 kcal Electronic energy + Delta-G solvation = -26865.159411 eV Core-core repulsion = 23184.059428 eV Total energy + Delta-G solvation = -3681.099983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20068 -38.77820 -37.15327 -35.55160 -34.55184 -32.77145 -32.43458 -30.55600 -29.08088 -26.15622 -25.78399 -25.58279 -24.82328 -23.27830 -21.97172 -21.48141 -21.14929 -20.34348 -18.45345 -17.77021 -16.66222 -16.52393 -16.37551 -15.92946 -15.49482 -15.04839 -15.00107 -14.85139 -14.63306 -14.26332 -13.81243 -13.75074 -13.50046 -13.26451 -13.13746 -12.85321 -12.79683 -12.55883 -12.40585 -12.18554 -12.10089 -11.97841 -11.65401 -11.52461 -11.41518 -11.37665 -11.26083 -11.08508 -11.00744 -10.94344 -10.66835 -10.48113 -10.29551 -10.24010 -9.84845 -9.47463 -9.00617 -8.89398 -8.62079 -8.49630 -6.91344 -6.28730 -4.00342 2.77549 2.96923 3.29969 3.34012 3.50635 3.60457 3.80730 4.15594 4.26776 4.33425 4.38120 4.42884 4.50295 4.60922 4.66218 4.67833 4.71899 4.75196 4.81253 4.94300 5.09551 5.10438 5.16096 5.18788 5.21828 5.33076 5.33746 5.38578 5.44750 5.45700 5.48278 5.58852 5.60757 5.63668 5.67356 5.73238 5.75534 5.77307 5.81470 5.83205 5.89276 5.94101 6.00750 6.03607 6.21202 6.30775 6.63171 6.72708 7.02507 7.65962 7.94292 8.41781 8.51911 9.17556 10.80500 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.001803 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.467226 B =15522.382955 C =16107.218826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.118 4.118 5 C 0.058 3.942 6 N -0.673 5.673 7 C 0.096 3.904 8 H 0.101 0.899 9 C -0.179 4.179 10 C 0.141 3.859 11 H 0.113 0.887 12 N -0.722 5.722 13 C 0.531 3.469 14 O -0.520 6.520 15 C -0.125 4.125 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.236 1.236 25 C -0.100 4.100 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.110 4.110 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.343 0.657 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.399 0.601 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.271 0.729 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.085 0.915 50 H 0.060 0.940 51 H 0.075 0.925 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.918 -15.892 14.557 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.071 4.071 6 N -0.302 5.302 7 C -0.015 4.015 8 H 0.119 0.881 9 C -0.220 4.220 10 C 0.035 3.965 11 H 0.131 0.869 12 N -0.375 5.375 13 C 0.317 3.683 14 O -0.395 6.395 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.160 1.160 25 C -0.102 4.102 26 C -0.163 4.163 27 C -0.166 4.166 28 C -0.148 4.148 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.162 0.838 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.234 0.766 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.103 0.897 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.666 -14.139 15.019 32.928 hybrid contribution 0.768 -0.597 -1.151 1.507 sum -24.899 -14.735 13.867 32.084 Atomic orbital electron populations 1.21784 0.95947 1.01586 1.01797 1.21522 0.95797 0.96851 1.02043 1.21576 0.95189 0.96885 1.02074 1.21578 0.95046 0.96356 1.02603 1.22006 0.87625 0.96943 1.00529 1.60340 1.07132 1.12946 1.49792 1.22527 0.93908 0.89904 0.95190 0.88088 1.24160 0.98884 1.01470 0.97465 1.22027 0.82305 0.99722 0.92490 0.86896 1.45885 1.20842 1.15060 1.55751 1.20308 0.86655 0.83591 0.77709 1.90687 1.63669 1.26295 1.58851 1.23288 0.96050 1.05213 1.02996 1.84781 1.25551 1.13584 1.67631 1.22324 1.02509 1.02788 1.39305 0.89410 1.24705 0.93951 0.98808 0.93786 1.69939 1.11478 1.35939 1.34351 0.86737 0.82181 0.84354 0.78596 1.19201 1.19942 1.15951 1.23102 0.95802 0.96709 0.94543 1.22727 1.01647 0.97014 0.94922 1.22709 1.01511 0.96359 0.96001 1.22415 0.98473 0.96670 0.97208 0.92786 0.92820 0.92775 0.92088 0.92005 0.91944 0.92121 0.92176 0.91113 0.91105 0.95215 0.83839 0.91016 0.89612 0.76597 0.88548 0.88548 0.91953 0.90000 0.91560 0.89657 0.92075 0.90681 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.12 -0.61 5.21 -26.73 -0.14 -0.75 16 4 C -0.12 -0.65 5.47 -26.73 -0.15 -0.80 16 5 C 0.06 0.36 5.55 -3.82 -0.02 0.34 16 6 N -0.67 -4.59 5.77 -106.16 -0.61 -5.20 16 7 C 0.10 0.76 4.04 -67.18 -0.27 0.49 16 8 H 0.10 0.81 7.90 -51.93 -0.41 0.40 16 9 C -0.18 -1.71 7.51 -25.75 -0.19 -1.91 16 10 C 0.14 1.59 4.08 -67.48 -0.28 1.31 16 11 H 0.11 1.50 7.54 -51.93 -0.39 1.11 16 12 N -0.72 -9.22 5.29 -53.37 -0.28 -9.50 16 13 C 0.53 9.44 7.85 -10.99 -0.09 9.35 16 14 O -0.52 -11.24 15.50 5.56 0.09 -11.15 16 15 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 18 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 21 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 25 C -0.10 -0.86 1.07 -154.63 -0.16 -1.03 16 26 C -0.13 -1.09 7.84 -26.28 -0.21 -1.30 16 27 C -0.13 -1.02 8.08 -25.75 -0.21 -1.22 16 28 C -0.11 -0.88 6.85 -26.28 -0.18 -1.06 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 39 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.34 2.26 7.99 -39.29 -0.31 1.95 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.80 7.82 -51.93 -0.41 0.39 16 43 H 0.40 4.14 6.93 -40.82 -0.28 3.86 16 44 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.07 0.57 7.39 -51.93 -0.38 0.19 16 52 H 0.08 0.64 6.96 -51.93 -0.36 0.28 16 LS Contribution 424.28 15.07 6.39 6.39 Total: -1.00 -32.50 424.28 -11.33 -43.83 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -9.74 Total: 1.90 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.25 Total: -11.96 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.12 Total: -40.57 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -32.50 -11.33 -43.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202523686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.291 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds