Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46886 * 2 1 4 4 C 1.52998 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47348 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.47390 * 179.97438 * 5 4 3 7 7 C 1.46897 * 111.00386 * 180.02562 * 6 5 4 8 8 H 1.09006 * 112.94367 * 26.89978 * 7 6 5 9 9 C 1.53950 * 113.66253 * 255.49940 * 7 6 5 10 10 C 1.53952 * 87.37851 * 220.83117 * 9 7 6 11 11 H 1.09004 * 113.65933 * 270.12700 * 10 9 7 12 12 N 1.46501 * 113.66271 * 139.16614 * 10 9 7 13 13 C 1.34779 * 119.99892 * 104.50320 * 12 10 9 14 14 O 1.21276 * 120.00041 * 0.02562 * 13 12 10 15 15 C 1.50693 * 119.99545 * 179.97438 * 13 12 10 16 16 S 1.81006 * 109.46853 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00108 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99874 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00335 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00206 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99642 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47120 * 89.99854 * 21 19 17 23 23 H 1.48500 * 109.46919 * 209.99758 * 21 19 17 24 24 H 1.48496 * 109.47201 * 329.99334 * 21 19 17 25 25 C 1.52913 * 86.78179 * 24.69389 * 10 9 7 26 26 C 1.52907 * 121.13530 * 209.38624 * 25 10 9 27 27 C 1.53950 * 86.78193 * 209.37968 * 26 25 10 28 28 C 1.52906 * 121.13846 * 100.82243 * 25 10 9 29 29 H 1.08999 * 109.47215 * 60.00523 * 1 2 3 30 30 H 1.08999 * 109.46993 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47103 * 300.00350 * 1 2 3 32 32 H 1.09000 * 109.47103 * 239.99650 * 2 1 3 33 33 H 1.09001 * 109.46728 * 119.99649 * 2 1 3 34 34 H 1.09000 * 109.47536 * 59.99915 * 3 2 1 35 35 H 1.09006 * 109.47572 * 299.99983 * 3 2 1 36 36 H 1.08993 * 109.47678 * 59.99847 * 4 3 2 37 37 H 1.09008 * 109.47111 * 299.99647 * 4 3 2 38 38 H 1.09000 * 109.47332 * 59.99723 * 5 4 3 39 39 H 1.08995 * 109.47106 * 300.00037 * 5 4 3 40 40 H 1.00899 * 110.99527 * 56.04112 * 6 5 4 41 41 H 1.09002 * 113.58302 * 106.18718 * 9 7 6 42 42 H 1.09004 * 113.57731 * 335.46891 * 9 7 6 43 43 H 0.97000 * 119.99912 * 284.49983 * 12 10 9 44 44 H 1.08997 * 109.47831 * 300.00115 * 15 13 12 45 45 H 1.09004 * 109.47216 * 60.00294 * 15 13 12 46 46 H 0.97009 * 120.00302 * 180.02562 * 20 19 17 47 47 H 1.09008 * 113.66358 * 323.84736 * 26 25 10 48 48 H 1.08997 * 113.66794 * 94.90547 * 26 25 10 49 49 H 1.09000 * 113.58006 * 270.12866 * 27 26 25 50 50 H 1.09006 * 113.58155 * 139.33341 * 27 26 25 51 51 H 1.09003 * 113.65932 * 265.08982 * 28 25 10 52 52 H 1.09003 * 113.66131 * 36.14542 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8851 -0.0013 6 7 5.5490 2.8851 -0.0013 7 6 6.0754 4.2565 -0.0013 8 1 5.3920 4.9741 0.4529 9 6 6.6265 4.7068 -1.3664 10 6 7.7829 5.3743 -0.6001 11 1 7.5809 6.4070 -0.3159 12 7 9.0888 5.2051 -1.2421 13 6 9.6516 6.2340 -1.9063 14 8 9.0771 7.3001 -1.9720 15 6 10.9951 6.0601 -2.5662 16 16 11.4778 7.6087 -3.3693 17 6 13.0364 7.1330 -4.0396 18 1 13.4065 6.1299 -3.8866 19 6 13.7880 8.0470 -4.7649 20 7 14.9525 7.6917 -5.2652 21 14 13.1475 9.7816 -5.0300 22 1 13.6112 10.6552 -3.9223 23 1 13.6593 10.3062 -6.3216 24 1 11.6629 9.7624 -5.0571 25 6 7.5121 4.3643 0.5157 26 6 7.8038 4.7042 1.9777 27 6 8.0551 3.1999 2.1869 28 6 8.3851 3.1205 0.6853 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9330 0.9289 -0.8908 37 1 3.9337 0.9286 0.8892 38 1 3.7170 3.3992 0.8887 39 1 3.7163 3.3986 -0.8912 40 1 5.9105 2.3586 -0.7824 41 1 5.9807 5.4154 -1.8852 42 1 6.9444 3.8805 -2.0024 43 1 9.5485 4.3525 -1.1892 44 1 11.7379 5.7945 -1.8140 45 1 10.9338 5.2674 -3.3119 46 1 15.4780 8.3306 -5.7718 47 1 8.6931 5.3195 2.1148 48 1 6.9374 5.0826 2.5202 49 1 7.1608 2.6431 2.4668 50 1 8.9070 2.9857 2.8325 51 1 7.9830 2.2337 0.1953 52 1 9.4378 3.2907 0.4591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202523686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -40.102525 kcal Electronic energy + Delta-G solvation = -26866.007791 eV Core-core repulsion = 23184.059428 eV Total energy + Delta-G solvation = -3681.948364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03522 -40.11721 -37.65049 -36.21716 -35.43184 -34.67969 -33.70201 -31.32223 -30.33202 -27.87008 -26.77742 -26.35508 -25.56110 -24.09382 -22.45602 -22.04830 -21.79084 -21.61131 -19.97676 -19.02400 -17.93987 -17.64944 -17.10599 -16.90020 -16.60845 -16.42047 -16.13587 -15.96391 -15.49690 -15.34351 -14.93859 -14.76586 -14.53803 -14.28271 -14.10683 -13.85822 -13.63268 -13.39123 -13.36022 -13.21118 -13.03044 -12.97716 -12.82631 -12.73035 -12.47560 -12.33869 -12.21687 -11.87738 -11.86639 -11.83036 -11.59051 -11.36413 -11.24070 -11.17993 -11.09729 -10.98311 -10.86687 -10.54580 -9.96447 -9.25534 -9.00403 -8.52217 -6.23125 0.98167 1.30659 1.46075 1.54427 1.55414 2.21422 2.25855 2.70858 2.86122 3.13579 3.38864 3.52395 3.68689 3.80248 3.87037 3.94164 3.99906 4.06219 4.10387 4.22174 4.24485 4.35907 4.43366 4.44815 4.50308 4.53349 4.63224 4.70983 4.74925 4.76642 4.89369 4.91863 4.92568 4.95702 5.02211 5.04070 5.06375 5.18046 5.19052 5.24631 5.26104 5.35677 5.43969 5.48035 5.53206 5.59236 5.66182 5.69992 6.10575 6.12297 6.45592 6.50240 6.93044 7.19408 8.60174 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.001803 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.467226 B =15522.382955 C =16107.218826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.110 4.110 5 C 0.060 3.940 6 N -0.668 5.668 7 C 0.109 3.891 8 H 0.103 0.897 9 C -0.173 4.173 10 C 0.127 3.873 11 H 0.091 0.909 12 N -0.697 5.697 13 C 0.536 3.464 14 O -0.564 6.564 15 C -0.112 4.112 16 S -0.175 6.175 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.238 1.238 25 C -0.090 4.090 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.108 4.108 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.027 0.973 40 H 0.347 0.653 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.414 0.586 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.277 0.723 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.389 -17.016 15.433 34.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.148 4.148 5 C -0.069 4.069 6 N -0.298 5.298 7 C -0.003 4.003 8 H 0.120 0.880 9 C -0.214 4.214 10 C 0.022 3.978 11 H 0.109 0.891 12 N -0.350 5.350 13 C 0.321 3.679 14 O -0.442 6.442 15 C -0.263 4.263 16 S 0.051 5.949 17 C -0.678 4.678 18 H 0.080 0.920 19 C -0.158 4.158 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.162 1.162 25 C -0.091 4.091 26 C -0.167 4.167 27 C -0.158 4.158 28 C -0.145 4.145 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.166 0.834 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.252 0.748 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.083 0.917 51 H 0.102 0.898 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.145 -15.323 15.915 34.999 hybrid contribution 1.172 -0.392 -1.335 1.819 sum -25.973 -15.715 14.580 33.677 Atomic orbital electron populations 1.21791 0.95784 1.01811 1.01807 1.21518 0.95963 0.96691 1.02020 1.21547 0.94944 0.96989 1.01982 1.21498 0.95164 0.95714 1.02450 1.22000 0.87105 0.97405 1.00345 1.60329 1.07555 1.11963 1.49931 1.22370 0.93561 0.90601 0.93725 0.87951 1.24139 0.97809 1.01209 0.98255 1.22215 0.81730 0.99597 0.94302 0.89082 1.45677 1.21141 1.14352 1.53830 1.19988 0.85925 0.83959 0.77983 1.90678 1.64540 1.28132 1.60844 1.23282 0.97577 1.01965 1.03481 1.84710 1.23590 1.18131 1.68440 1.22465 1.04112 1.01799 1.39381 0.91970 1.25542 0.94164 1.02531 0.93586 1.70014 1.12637 1.37525 1.35252 0.85876 0.81437 0.79874 0.79237 1.18693 1.18261 1.16174 1.23070 0.96274 0.96186 0.93608 1.22745 1.01434 0.97652 0.94874 1.22652 1.01760 0.95439 0.95958 1.22445 0.98317 0.96390 0.97380 0.92871 0.92520 0.92681 0.92174 0.91954 0.91919 0.92328 0.92096 0.91414 0.91197 0.95504 0.83365 0.91997 0.88851 0.74843 0.86951 0.86901 0.91358 0.90994 0.91185 0.89396 0.91697 0.89754 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.12 -1.07 5.93 30.59 0.18 -0.89 16 3 C -0.12 -1.03 5.21 30.59 0.16 -0.87 16 4 C -0.11 -1.01 5.47 30.59 0.17 -0.84 16 5 C 0.06 0.63 5.55 86.30 0.48 1.11 16 6 N -0.67 -7.54 5.77 -489.79 -2.82 -10.37 16 7 C 0.11 1.52 4.04 45.26 0.18 1.70 16 8 H 0.10 1.46 7.90 -2.38 -0.02 1.44 16 9 C -0.17 -3.05 7.51 31.23 0.23 -2.82 16 10 C 0.13 2.72 4.08 45.28 0.18 2.90 16 11 H 0.09 2.42 7.54 -2.38 -0.02 2.40 16 12 N -0.70 -16.72 5.29 -441.15 -2.33 -19.06 16 13 C 0.54 18.55 7.85 87.65 0.69 19.24 16 14 O -0.56 -24.31 15.50 -3.02 -0.05 -24.36 16 15 C -0.11 -4.24 6.16 71.23 0.44 -3.80 16 16 S -0.18 -8.92 18.55 -56.49 -1.05 -9.96 16 17 C -0.53 -31.00 10.04 67.95 0.68 -30.31 16 18 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 19 C 0.05 2.78 5.50 84.86 0.47 3.25 16 20 N -0.92 -55.90 13.97 21.65 0.30 -55.59 16 21 Si 0.91 45.20 27.74 68.60 1.90 47.10 16 22 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 25 C -0.09 -1.38 1.07 -52.26 -0.06 -1.43 16 26 C -0.13 -2.03 7.84 30.88 0.24 -1.79 16 27 C -0.12 -1.62 8.08 31.23 0.25 -1.37 16 28 C -0.11 -1.43 6.85 30.88 0.21 -1.22 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 39 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.35 3.64 7.99 -89.69 -0.72 2.92 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.52 7.82 -2.38 -0.02 1.50 16 43 H 0.41 7.59 6.93 -92.71 -0.64 6.95 16 44 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 45 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 46 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 47 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 51 H 0.08 1.01 7.39 -2.39 -0.02 0.99 16 52 H 0.08 1.07 6.96 -2.39 -0.02 1.05 16 Total: -1.00 -70.16 424.28 0.67 -69.48 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.51 Total: 20.46 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 5.23 Total: -17.70 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -4.86 Total: -85.02 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.96 kcal Total: -70.16 0.67 -69.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202523686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.381 kcal (2) G-P(sol) polarization free energy of solvation -70.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds