Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.88754 * 23.93049 * 10 9 7 12 12 C 1.53957 * 113.66372 * 252.46113 * 10 9 7 13 13 C 1.53947 * 87.29654 * 220.79461 * 12 10 9 14 14 H 1.09002 * 113.66143 * 139.20782 * 13 12 10 15 15 N 1.46497 * 113.74924 * 270.25046 * 13 12 10 16 16 C 1.34780 * 119.99740 * 252.22905 * 15 13 12 17 17 O 1.21276 * 120.00261 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99567 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.54369 * 60.00190 * 18 16 15 20 20 F 1.39906 * 109.47292 * 179.97438 * 19 18 16 21 21 C 1.53174 * 109.54555 * 299.82267 * 18 16 15 22 22 C 1.53282 * 109.06371 * 297.02929 * 21 18 16 23 23 O 1.42902 * 109.46284 * 302.44434 * 22 21 18 24 24 C 1.42907 * 114.09461 * 61.15954 * 23 22 21 25 25 C 1.53092 * 109.41454 * 298.84023 * 24 23 22 26 26 C 1.52908 * 113.66357 * 155.27728 * 10 9 7 27 27 C 1.52908 * 121.13642 * 13.64835 * 26 10 9 28 28 C 1.53946 * 86.78542 * 209.38235 * 27 26 10 29 29 C 1.52910 * 121.13509 * 265.09062 * 26 10 9 30 30 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.57648 * 335.40139 * 12 10 9 33 33 H 1.08999 * 113.57776 * 106.19339 * 12 10 9 34 34 H 0.97000 * 120.00231 * 72.22981 * 15 13 12 35 35 H 1.08997 * 109.46886 * 299.99974 * 19 18 16 36 36 H 1.09009 * 109.47053 * 59.99899 * 19 18 16 37 37 H 1.08994 * 109.52483 * 57.02582 * 21 18 16 38 38 H 1.09004 * 109.51805 * 177.20879 * 21 18 16 39 39 H 1.09003 * 109.45720 * 182.44563 * 22 21 18 40 40 H 1.08999 * 109.46577 * 62.45303 * 22 21 18 41 41 H 1.09002 * 109.47666 * 178.85852 * 24 23 22 42 42 H 1.08997 * 109.49162 * 58.82721 * 24 23 22 43 43 H 1.09001 * 109.52288 * 297.70599 * 25 24 23 44 44 H 1.08999 * 109.57365 * 177.55031 * 25 24 23 45 45 H 1.09002 * 113.66478 * 323.85928 * 27 26 10 46 46 H 1.09008 * 113.65934 * 94.91137 * 27 26 10 47 47 H 1.08996 * 113.58314 * 270.13495 * 28 27 26 48 48 H 1.08999 * 113.65166 * 139.34935 * 28 27 26 49 49 H 1.09004 * 113.66092 * 265.08702 * 29 26 10 50 50 H 1.08994 * 113.66382 * 36.05415 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0664 -3.5659 0.3985 12 6 1.9937 -4.4014 -1.3511 13 6 1.8251 -5.7000 -0.5416 14 1 1.0940 -6.3882 -0.9660 15 7 3.0920 -6.3526 -0.2025 16 6 3.4492 -7.4943 -0.8233 17 8 2.7216 -7.9817 -1.6623 18 6 4.7528 -8.1654 -0.4749 19 6 4.7568 -8.5363 1.0095 20 9 5.9673 -9.1596 1.3312 21 6 5.9147 -7.2111 -0.7677 22 6 5.9481 -6.9092 -2.2701 23 8 6.0731 -8.1321 -2.9989 24 6 4.9907 -9.0435 -2.7991 25 6 4.9190 -9.4321 -1.3200 26 6 1.2654 -4.8257 0.5811 27 6 -0.2406 -4.7175 0.8230 28 6 -0.0394 -5.7165 1.9768 29 6 1.4190 -5.2284 2.0482 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.1202 -4.1445 -1.9502 33 1 2.9238 -4.3587 -1.9178 34 1 3.6738 -5.9631 0.4688 35 1 4.6416 -7.6338 1.6098 36 1 3.9315 -9.2178 1.2159 37 1 5.7745 -6.2848 -0.2108 38 1 6.8535 -7.6780 -0.4693 39 1 6.7990 -6.2651 -2.4922 40 1 5.0258 -6.4058 -2.5600 41 1 5.1519 -9.9370 -3.4023 42 1 4.0557 -8.5684 -3.0958 43 1 5.8377 -9.9436 -1.0328 44 1 4.0678 -10.0931 -1.1569 45 1 -0.5611 -3.7287 1.1512 46 1 -0.8444 -5.1100 0.0047 47 1 -0.1359 -6.7588 1.6730 48 1 -0.6225 -5.4799 2.8668 49 1 2.1410 -6.0291 2.2087 50 1 1.5666 -4.3834 2.7206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203411051.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = -101.748597 kcal Electronic energy + Delta-G solvation = -31893.944419 eV Core-core repulsion = 27643.109705 eV Total energy + Delta-G solvation = -4250.834714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.68980 -42.26685 -41.19179 -39.04678 -36.45836 -35.86315 -35.53000 -33.79625 -32.13095 -31.54310 -29.04543 -26.73394 -26.65079 -25.44064 -24.87173 -24.73583 -23.92983 -22.89659 -21.62481 -20.59636 -19.43510 -18.94619 -18.00514 -17.66465 -17.33449 -17.11004 -16.80645 -16.55643 -16.46515 -16.40644 -16.21709 -15.76895 -15.64368 -15.26168 -15.14904 -14.65635 -14.61714 -14.20437 -13.92187 -13.52878 -13.38703 -13.37188 -13.25764 -13.17832 -12.87556 -12.74227 -12.67660 -12.54650 -12.36589 -12.29157 -12.11720 -11.99242 -11.82226 -11.54093 -11.48829 -11.33700 -11.16985 -10.86098 -10.83848 -10.64931 -10.40215 -10.00536 -8.93963 -7.93490 -5.20562 1.42601 1.47653 1.48596 1.57615 1.93841 2.56936 2.89863 3.22040 3.34743 3.37427 3.39260 3.45506 3.66176 3.72998 3.79517 3.92335 3.94886 4.00695 4.09152 4.16811 4.18100 4.27171 4.31039 4.37809 4.47220 4.56248 4.58815 4.63280 4.71118 4.72799 4.74865 4.79964 4.83406 4.96880 4.96972 4.98502 5.02443 5.08624 5.12377 5.12880 5.16435 5.25298 5.49530 5.52209 5.63916 5.68204 6.18842 6.28982 6.45836 7.12383 7.36062 8.14057 8.36210 9.29972 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.003244 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.163385 B = 8629.224782 C = 9461.866027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.295 1.295 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.167 3.833 11 H 0.082 0.918 12 C -0.173 4.173 13 C 0.165 3.835 14 H 0.091 0.909 15 N -0.690 5.690 16 C 0.530 3.470 17 O -0.561 6.561 18 C -0.107 4.107 19 C 0.077 3.923 20 F -0.214 7.214 21 C -0.141 4.141 22 C 0.054 3.946 23 O -0.398 6.398 24 C 0.048 3.952 25 C -0.126 4.126 26 C -0.115 4.115 27 C -0.116 4.116 28 C -0.126 4.126 29 C -0.114 4.114 30 H 0.249 0.751 31 H 0.376 0.624 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.412 0.588 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.034 0.966 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.306 -20.482 3.580 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.226 1.226 6 H -0.223 1.223 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.100 0.900 12 C -0.215 4.215 13 C 0.058 3.942 14 H 0.109 0.891 15 N -0.340 5.340 16 C 0.317 3.683 17 O -0.439 6.439 18 C -0.110 4.110 19 C 0.022 3.978 20 F -0.195 7.195 21 C -0.179 4.179 22 C -0.023 4.023 23 O -0.317 6.317 24 C -0.028 4.028 25 C -0.164 4.164 26 C -0.117 4.117 27 C -0.154 4.154 28 C -0.163 4.163 29 C -0.151 4.151 30 H 0.058 0.942 31 H 0.209 0.791 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.249 0.751 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.052 0.948 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.128 -20.733 2.894 23.255 hybrid contribution -0.371 1.671 -0.018 1.712 sum 9.757 -19.062 2.877 21.606 Atomic orbital electron populations 1.69814 1.06565 1.25804 1.59801 1.25479 0.96241 1.00854 1.04032 0.85172 0.78447 0.80351 0.76402 1.18887 1.22622 1.22258 1.19719 0.91519 0.85311 1.40440 0.90441 1.42545 1.05588 1.00722 1.87031 1.21706 0.95133 0.84002 0.93467 0.90010 1.24141 1.01016 0.96857 0.99499 1.21140 0.85821 0.92211 0.94982 0.89124 1.45533 1.21587 1.24628 1.42260 1.20454 0.86956 0.80262 0.80641 1.90669 1.54280 1.65312 1.33638 1.21525 0.93189 0.97933 0.98398 1.22046 0.83730 0.99832 0.92217 1.92771 1.48309 1.84923 1.93500 1.22328 0.98104 0.99983 0.97447 1.22712 1.02231 0.86447 0.90899 1.87891 1.46112 1.28709 1.68983 1.22837 0.90091 0.93758 0.96114 1.22004 1.03921 0.95490 0.94991 1.23268 0.97283 0.95924 0.95226 1.22455 0.93971 0.99771 0.99233 1.22773 0.96814 0.98761 0.97957 1.22594 0.97545 1.00804 0.94184 0.94188 0.79088 0.91680 0.92369 0.75070 0.87772 0.88856 0.88243 0.88343 0.86973 0.94793 0.87770 0.92764 0.89130 0.89769 0.91425 0.91874 0.89252 0.91130 0.89399 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.93 13.06 21.65 0.28 -57.64 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 7 C -0.24 -12.55 9.97 84.03 0.84 -11.72 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 9 N -0.72 -34.03 5.30 -321.55 -1.70 -35.73 16 10 C 0.17 5.87 4.28 45.28 0.19 6.06 16 11 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 12 C -0.17 -5.69 7.69 31.23 0.24 -5.45 16 13 C 0.16 4.31 4.12 45.28 0.19 4.50 16 14 H 0.09 2.61 7.46 -2.39 -0.02 2.59 16 15 N -0.69 -13.62 4.58 -441.16 -2.02 -15.64 16 16 C 0.53 11.23 5.15 87.66 0.45 11.68 16 17 O -0.56 -16.05 13.45 -3.02 -0.04 -16.09 16 18 C -0.11 -1.71 0.49 -52.81 -0.03 -1.74 16 19 C 0.08 0.91 6.28 71.98 0.45 1.37 16 20 F -0.21 -3.32 16.22 44.97 0.73 -2.59 16 21 C -0.14 -2.12 4.78 30.75 0.15 -1.97 16 22 C 0.05 1.06 6.62 72.08 0.48 1.54 16 23 O -0.40 -9.31 10.77 -148.98 -1.60 -10.92 16 24 C 0.05 1.03 6.55 72.01 0.47 1.50 16 25 C -0.13 -2.21 4.47 30.69 0.14 -2.08 16 26 C -0.11 -3.18 0.92 -52.31 -0.05 -3.23 16 27 C -0.12 -3.45 7.15 30.88 0.22 -3.23 16 28 C -0.13 -2.84 8.08 31.23 0.25 -2.59 16 29 C -0.11 -2.58 7.62 30.89 0.24 -2.35 16 30 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.38 19.28 6.23 -92.71 -0.58 18.71 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.41 6.23 7.24 -92.71 -0.67 5.56 16 35 H 0.10 0.80 7.57 -2.39 -0.02 0.78 16 36 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.10 1.15 7.51 -2.39 -0.02 1.13 16 38 H 0.10 1.40 7.73 -2.38 -0.02 1.39 16 39 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.03 0.79 7.38 -2.39 -0.02 0.77 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.42 5.81 -2.39 -0.01 1.41 16 43 H 0.09 1.47 7.73 -2.39 -0.02 1.45 16 44 H 0.08 1.45 8.03 -2.39 -0.02 1.43 16 45 H 0.07 2.45 7.03 -2.39 -0.02 2.43 16 46 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 47 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.09 1.47 7.58 -2.39 -0.02 1.45 16 50 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -66.96 388.70 2.07 -64.89 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.29 Total: 38.07 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.70 Total: -11.35 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -3.44 Total: -109.01 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.64 Total: -27.01 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.73 Total: -2.59 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.96 2.07 -64.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203411051.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.863 kcal (2) G-P(sol) polarization free energy of solvation -66.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds