Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09007 * 112.88819 * 332.87855 * 10 9 7 12 12 C 1.53945 * 113.66352 * 104.22888 * 10 9 7 13 13 C 1.53949 * 87.29561 * 139.20570 * 12 10 9 14 14 H 1.08997 * 113.66283 * 220.70040 * 13 12 10 15 15 N 1.46498 * 113.66325 * 89.73726 * 13 12 10 16 16 C 1.34776 * 120.00219 * 104.50906 * 15 13 12 17 17 O 1.21286 * 120.00159 * 359.97438 * 16 15 13 18 18 C 1.50694 * 120.00170 * 180.02562 * 16 15 13 19 19 C 1.53003 * 109.54890 * 59.81687 * 18 16 15 20 20 F 1.39898 * 109.46716 * 300.00592 * 19 18 16 21 21 C 1.53183 * 109.54142 * 299.55096 * 18 16 15 22 22 C 1.53089 * 109.16227 * 297.11111 * 21 18 16 23 23 O 1.42900 * 109.41795 * 302.39020 * 22 21 18 24 24 C 1.42911 * 114.09445 * 61.16155 * 23 22 21 25 25 C 1.53086 * 109.41041 * 298.83760 * 24 23 22 26 26 C 1.52905 * 86.78348 * 335.26563 * 13 12 10 27 27 C 1.52903 * 121.13998 * 150.62796 * 26 13 12 28 28 C 1.53952 * 86.78281 * 100.81413 * 27 26 13 29 29 C 1.52914 * 121.12967 * 259.18583 * 26 13 12 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09008 * 113.57875 * 253.80480 * 12 10 9 33 33 H 1.08998 * 113.58260 * 24.59978 * 12 10 9 34 34 H 0.97001 * 120.00352 * 284.50325 * 15 13 12 35 35 H 1.09007 * 109.46779 * 59.99736 * 19 18 16 36 36 H 1.08993 * 109.47417 * 180.02562 * 19 18 16 37 37 H 1.08992 * 109.52110 * 57.02025 * 21 18 16 38 38 H 1.09005 * 109.51986 * 177.21097 * 21 18 16 39 39 H 1.09003 * 109.47903 * 182.40495 * 22 21 18 40 40 H 1.09000 * 109.47975 * 62.37710 * 22 21 18 41 41 H 1.08995 * 109.47685 * 178.85755 * 24 23 22 42 42 H 1.08997 * 109.48322 * 58.82524 * 24 23 22 43 43 H 1.09001 * 109.52900 * 297.70133 * 25 24 23 44 44 H 1.09005 * 109.52121 * 177.51499 * 25 24 23 45 45 H 1.08996 * 113.66072 * 215.28504 * 27 26 13 46 46 H 1.08998 * 113.66137 * 346.33797 * 27 26 13 47 47 H 1.09003 * 113.57686 * 270.12827 * 28 27 26 48 48 H 1.09004 * 113.65027 * 139.35756 * 28 27 26 49 49 H 1.08996 * 113.66908 * 13.65263 * 29 26 13 50 50 H 1.09009 * 113.65938 * 144.62054 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0461 -3.5783 -0.4463 12 6 2.0605 -4.3616 1.3759 13 6 1.8527 -5.6831 0.6141 14 1 1.1451 -6.3586 1.0947 15 7 3.1029 -6.3448 0.2329 16 6 3.5254 -7.4297 0.9118 17 8 2.8708 -7.8580 1.8387 18 6 4.8117 -8.1101 0.5201 19 6 5.9721 -7.1202 0.6417 20 9 5.7455 -6.0298 -0.2050 21 6 4.7091 -8.6069 -0.9253 22 6 3.5961 -9.6539 -1.0189 23 8 3.8732 -10.7240 -0.1132 24 6 3.9337 -10.3268 1.2582 25 6 5.0603 -9.3069 1.4433 26 6 1.2380 -4.8416 -0.5048 27 6 1.3191 -5.2872 -1.9652 28 6 -0.1337 -5.7717 -1.8076 29 6 -0.2782 -4.7391 -0.6750 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0174 -4.3032 1.8947 33 1 1.2174 -4.0864 2.0096 34 1 3.6267 -6.0023 -0.5082 35 1 6.0454 -6.7712 1.6718 36 1 6.9017 -7.6133 0.3577 37 1 4.4773 -7.7691 -1.5828 38 1 5.6567 -9.0548 -1.2246 39 1 3.5470 -10.0422 -2.0362 40 1 2.6424 -9.1949 -0.7584 41 1 4.1278 -11.1998 1.8812 42 1 2.9844 -9.8767 1.5485 43 1 6.0150 -9.7689 1.1918 44 1 5.0796 -8.9696 2.4796 45 1 1.4312 -4.4623 -2.6687 46 1 2.0327 -6.0929 -2.1377 47 1 -0.2145 -6.8046 -1.4689 48 1 -0.7615 -5.5603 -2.6733 49 1 -0.8407 -5.1069 0.1831 50 1 -0.6151 -3.7596 -1.0145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203411054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = -81.541502 kcal Electronic energy + Delta-G solvation = -32198.813404 eV Core-core repulsion = 27948.854935 eV Total energy + Delta-G solvation = -4249.958469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.03764 -41.10922 -40.09081 -38.07184 -35.10223 -34.80141 -34.09717 -32.31621 -31.27224 -29.76774 -28.21102 -25.51904 -25.10567 -24.21790 -23.94627 -23.70287 -22.65908 -21.68994 -20.40184 -19.62564 -17.89455 -17.29160 -16.96453 -16.83794 -16.44435 -16.09803 -15.91137 -15.72527 -15.30508 -15.17338 -14.90289 -14.67806 -14.37861 -14.14347 -13.88050 -13.63907 -13.42119 -12.73786 -12.65509 -12.60171 -12.46154 -12.16764 -11.88807 -11.75741 -11.67590 -11.64240 -11.53887 -11.39256 -10.97307 -10.95333 -10.83142 -10.74406 -10.64370 -10.20622 -10.10736 -9.96091 -9.85498 -9.68469 -9.49922 -9.36318 -8.83308 -8.73618 -6.95971 -5.79861 -3.07980 2.47045 3.04417 3.41393 3.47617 3.49488 3.64184 3.98616 4.04829 4.17190 4.53171 4.57298 4.64298 4.70014 4.74314 4.79020 4.95323 4.97137 5.02499 5.13420 5.19057 5.20908 5.24513 5.26855 5.33812 5.44281 5.45378 5.54265 5.63291 5.64357 5.71009 5.78315 5.87191 5.91535 6.00852 6.05951 6.13740 6.17431 6.19770 6.35647 6.41349 6.51883 6.64414 6.75489 6.93025 6.95793 7.06280 7.56563 7.69484 8.19169 8.39215 9.50766 10.08590 10.43547 11.42627 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.003269 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.456099 B = 8563.655695 C = 9360.999666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.709 5.709 10 C 0.181 3.819 11 H 0.074 0.926 12 C -0.173 4.173 13 C 0.141 3.859 14 H 0.094 0.906 15 N -0.695 5.695 16 C 0.522 3.478 17 O -0.537 6.537 18 C -0.114 4.114 19 C 0.074 3.926 20 F -0.206 7.206 21 C -0.144 4.144 22 C 0.060 3.940 23 O -0.383 6.383 24 C 0.050 3.950 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.139 4.139 29 C -0.105 4.105 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.405 0.595 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 -20.904 -1.802 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.068 3.932 11 H 0.091 0.909 12 C -0.216 4.216 13 C 0.036 3.964 14 H 0.112 0.888 15 N -0.346 5.346 16 C 0.307 3.693 17 O -0.414 6.414 18 C -0.117 4.117 19 C 0.019 3.981 20 F -0.187 7.187 21 C -0.182 4.182 22 C -0.017 4.017 23 O -0.302 6.302 24 C -0.026 4.026 25 C -0.165 4.165 26 C -0.125 4.125 27 C -0.160 4.160 28 C -0.177 4.177 29 C -0.143 4.143 30 H 0.065 0.935 31 H 0.222 0.778 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.242 0.758 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.385 -21.167 -1.241 23.188 hybrid contribution 0.452 1.588 -0.173 1.660 sum 9.838 -19.579 -1.414 21.957 Atomic orbital electron populations 1.69665 1.05092 1.25595 1.57669 1.24739 0.95503 0.97693 1.02895 0.86138 0.78835 0.84176 0.77171 1.20556 1.21884 1.21888 1.19336 0.91090 0.84193 1.42624 0.91132 1.42375 1.05852 0.99620 1.86885 1.21377 0.94472 0.84978 0.92331 0.90853 1.24271 1.01679 0.95021 1.00590 1.21534 0.85202 0.93385 0.96289 0.88818 1.45798 1.24513 1.28873 1.35370 1.20143 0.86322 0.80318 0.82512 1.90650 1.57077 1.64597 1.29117 1.21599 0.94382 0.96940 0.98820 1.22028 0.97633 0.84019 0.94466 1.92754 1.95716 1.56741 1.73493 1.22275 1.01817 1.00308 0.93816 1.22552 0.96362 0.88330 0.94425 1.87907 1.92291 1.33374 1.16635 1.22822 0.99235 0.97959 0.82581 1.21954 1.00423 0.94279 0.99795 1.23369 0.97576 0.97846 0.93707 1.22637 0.96467 1.00290 0.96640 1.22821 0.97170 0.98622 0.99083 1.22467 0.93574 1.00111 0.98101 0.93532 0.77821 0.92435 0.89624 0.75770 0.89866 0.89346 0.89741 0.89540 0.88353 0.92972 0.88850 0.90276 0.90211 0.89651 0.89554 0.92434 0.91035 0.91824 0.91845 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.23 5.34 -52.99 -0.28 -17.52 16 10 C 0.18 3.50 4.28 -67.48 -0.29 3.21 16 11 H 0.07 1.45 8.12 -51.93 -0.42 1.02 16 12 C -0.17 -3.12 7.68 -25.75 -0.20 -3.32 16 13 C 0.14 2.16 4.08 -67.49 -0.28 1.89 16 14 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 15 N -0.69 -9.11 4.44 -53.38 -0.24 -9.35 16 16 C 0.52 6.68 5.15 -10.99 -0.06 6.62 16 17 O -0.54 -8.41 13.48 5.55 0.07 -8.33 16 18 C -0.11 -1.06 0.54 -155.47 -0.08 -1.15 16 19 C 0.07 0.61 6.37 37.16 0.24 0.85 16 20 F -0.21 -2.23 14.69 2.25 0.03 -2.20 16 21 C -0.14 -1.19 4.70 -26.59 -0.12 -1.31 16 22 C 0.06 0.57 6.62 37.20 0.25 0.81 16 23 O -0.38 -4.18 10.77 -35.23 -0.38 -4.56 16 24 C 0.05 0.51 6.55 37.20 0.24 0.75 16 25 C -0.13 -1.08 4.56 -26.59 -0.12 -1.21 16 26 C -0.12 -1.94 0.91 -154.71 -0.14 -2.08 16 27 C -0.12 -1.71 7.59 -26.28 -0.20 -1.91 16 28 C -0.14 -1.85 8.08 -25.75 -0.21 -2.06 16 29 C -0.10 -1.65 7.16 -26.28 -0.19 -1.84 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.39 9.90 6.12 -40.82 -0.25 9.65 16 32 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.40 5.01 5.85 -40.82 -0.24 4.77 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.68 7.29 -51.93 -0.38 0.30 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.57 7.38 -51.93 -0.38 0.18 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.98 5.80 -51.93 -0.30 0.68 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.74 8.03 -51.93 -0.42 0.33 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.06 0.70 7.50 -51.93 -0.39 0.31 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.10 1.78 6.96 -51.92 -0.36 1.41 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -31.23 386.83 -8.82 -40.05 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -8.15 Total: 13.77 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.40 Total: -7.94 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.20 Total: -53.82 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.30 Total: -12.89 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.03 Total: -2.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.23 -8.82 -40.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203411054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.495 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds