Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09007 * 112.88819 * 332.87855 * 10 9 7 12 12 C 1.53945 * 113.66352 * 104.22888 * 10 9 7 13 13 C 1.53949 * 87.29561 * 139.20570 * 12 10 9 14 14 H 1.08997 * 113.66283 * 220.70040 * 13 12 10 15 15 N 1.46498 * 113.66325 * 89.73726 * 13 12 10 16 16 C 1.34776 * 120.00219 * 104.50906 * 15 13 12 17 17 O 1.21286 * 120.00159 * 359.97438 * 16 15 13 18 18 C 1.50694 * 120.00170 * 180.02562 * 16 15 13 19 19 C 1.53003 * 109.54890 * 59.81687 * 18 16 15 20 20 F 1.39898 * 109.46716 * 300.00592 * 19 18 16 21 21 C 1.53183 * 109.54142 * 299.55096 * 18 16 15 22 22 C 1.53089 * 109.16227 * 297.11111 * 21 18 16 23 23 O 1.42900 * 109.41795 * 302.39020 * 22 21 18 24 24 C 1.42911 * 114.09445 * 61.16155 * 23 22 21 25 25 C 1.53086 * 109.41041 * 298.83760 * 24 23 22 26 26 C 1.52905 * 86.78348 * 335.26563 * 13 12 10 27 27 C 1.52903 * 121.13998 * 150.62796 * 26 13 12 28 28 C 1.53952 * 86.78281 * 100.81413 * 27 26 13 29 29 C 1.52914 * 121.12967 * 259.18583 * 26 13 12 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09008 * 113.57875 * 253.80480 * 12 10 9 33 33 H 1.08998 * 113.58260 * 24.59978 * 12 10 9 34 34 H 0.97001 * 120.00352 * 284.50325 * 15 13 12 35 35 H 1.09007 * 109.46779 * 59.99736 * 19 18 16 36 36 H 1.08993 * 109.47417 * 180.02562 * 19 18 16 37 37 H 1.08992 * 109.52110 * 57.02025 * 21 18 16 38 38 H 1.09005 * 109.51986 * 177.21097 * 21 18 16 39 39 H 1.09003 * 109.47903 * 182.40495 * 22 21 18 40 40 H 1.09000 * 109.47975 * 62.37710 * 22 21 18 41 41 H 1.08995 * 109.47685 * 178.85755 * 24 23 22 42 42 H 1.08997 * 109.48322 * 58.82524 * 24 23 22 43 43 H 1.09001 * 109.52900 * 297.70133 * 25 24 23 44 44 H 1.09005 * 109.52121 * 177.51499 * 25 24 23 45 45 H 1.08996 * 113.66072 * 215.28504 * 27 26 13 46 46 H 1.08998 * 113.66137 * 346.33797 * 27 26 13 47 47 H 1.09003 * 113.57686 * 270.12827 * 28 27 26 48 48 H 1.09004 * 113.65027 * 139.35756 * 28 27 26 49 49 H 1.08996 * 113.66908 * 13.65263 * 29 26 13 50 50 H 1.09009 * 113.65938 * 144.62054 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0461 -3.5783 -0.4463 12 6 2.0605 -4.3616 1.3759 13 6 1.8527 -5.6831 0.6141 14 1 1.1451 -6.3586 1.0947 15 7 3.1029 -6.3448 0.2329 16 6 3.5254 -7.4297 0.9118 17 8 2.8708 -7.8580 1.8387 18 6 4.8117 -8.1101 0.5201 19 6 5.9721 -7.1202 0.6417 20 9 5.7455 -6.0298 -0.2050 21 6 4.7091 -8.6069 -0.9253 22 6 3.5961 -9.6539 -1.0189 23 8 3.8732 -10.7240 -0.1132 24 6 3.9337 -10.3268 1.2582 25 6 5.0603 -9.3069 1.4433 26 6 1.2380 -4.8416 -0.5048 27 6 1.3191 -5.2872 -1.9652 28 6 -0.1337 -5.7717 -1.8076 29 6 -0.2782 -4.7391 -0.6750 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0174 -4.3032 1.8947 33 1 1.2174 -4.0864 2.0096 34 1 3.6267 -6.0023 -0.5082 35 1 6.0454 -6.7712 1.6718 36 1 6.9017 -7.6133 0.3577 37 1 4.4773 -7.7691 -1.5828 38 1 5.6567 -9.0548 -1.2246 39 1 3.5470 -10.0422 -2.0362 40 1 2.6424 -9.1949 -0.7584 41 1 4.1278 -11.1998 1.8812 42 1 2.9844 -9.8767 1.5485 43 1 6.0150 -9.7689 1.1918 44 1 5.0796 -8.9696 2.4796 45 1 1.4312 -4.4623 -2.6687 46 1 2.0327 -6.0929 -2.1377 47 1 -0.2145 -6.8046 -1.4689 48 1 -0.7615 -5.5603 -2.6733 49 1 -0.8407 -5.1069 0.1831 50 1 -0.6151 -3.7596 -1.0145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203411054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = -101.177838 kcal Electronic energy + Delta-G solvation = -32199.664899 eV Core-core repulsion = 27948.854935 eV Total energy + Delta-G solvation = -4250.809964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.77259 -42.20544 -41.20572 -39.02438 -36.47869 -35.78128 -35.57605 -33.82584 -32.11823 -31.52835 -28.91080 -26.76900 -26.73943 -25.50315 -25.01259 -24.61244 -23.78546 -22.89153 -21.67674 -20.66248 -19.43906 -18.91664 -17.94526 -17.65061 -17.24362 -17.12095 -16.82595 -16.73946 -16.53990 -16.34287 -16.11594 -15.72372 -15.54689 -15.41727 -15.20391 -14.73070 -14.46503 -14.24093 -13.92697 -13.50651 -13.45595 -13.32299 -13.23922 -13.21286 -12.88137 -12.76261 -12.59852 -12.57768 -12.32469 -12.22346 -12.14171 -12.02555 -11.84383 -11.65858 -11.47828 -11.32161 -11.20827 -10.87512 -10.80803 -10.66735 -10.38455 -9.96997 -8.96247 -7.94908 -5.22458 1.46301 1.46834 1.47472 1.56795 2.00766 2.55625 2.93063 3.23400 3.35264 3.36427 3.40987 3.42635 3.62755 3.73922 3.81991 3.91281 3.94890 3.96544 4.09311 4.13656 4.18639 4.27475 4.30922 4.44760 4.53461 4.55169 4.60192 4.60831 4.68210 4.69940 4.79137 4.80161 4.87083 4.92910 4.95938 5.00053 5.03933 5.05175 5.09117 5.09812 5.14932 5.25683 5.46332 5.49878 5.62318 5.64951 6.22046 6.27547 6.50049 7.15755 7.34370 8.11219 8.35252 9.28454 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.003269 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.456099 B = 8563.655695 C = 9360.999666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.072 0.928 12 C -0.171 4.171 13 C 0.163 3.837 14 H 0.088 0.912 15 N -0.691 5.691 16 C 0.519 3.481 17 O -0.568 6.568 18 C -0.108 4.108 19 C 0.070 3.930 20 F -0.221 7.221 21 C -0.140 4.140 22 C 0.056 3.944 23 O -0.394 6.394 24 C 0.048 3.952 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.116 4.116 28 C -0.123 4.123 29 C -0.114 4.114 30 H 0.250 0.750 31 H 0.377 0.623 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.031 0.969 41 H 0.108 0.892 42 H 0.050 0.950 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.144 -22.755 -2.862 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.090 0.910 12 C -0.214 4.214 13 C 0.056 3.944 14 H 0.106 0.894 15 N -0.342 5.342 16 C 0.306 3.694 17 O -0.447 6.447 18 C -0.111 4.111 19 C 0.015 3.985 20 F -0.202 7.202 21 C -0.177 4.177 22 C -0.021 4.021 23 O -0.313 6.313 24 C -0.028 4.028 25 C -0.161 4.161 26 C -0.116 4.116 27 C -0.153 4.153 28 C -0.160 4.160 29 C -0.152 4.152 30 H 0.059 0.941 31 H 0.211 0.789 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.249 0.751 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.050 0.950 41 H 0.126 0.874 42 H 0.068 0.932 43 H 0.127 0.873 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.860 -23.062 -2.312 26.036 hybrid contribution -0.300 2.079 0.218 2.112 sum 11.561 -20.983 -2.094 24.048 Atomic orbital electron populations 1.69815 1.06514 1.25894 1.59647 1.25501 0.96323 1.00878 1.03856 0.85133 0.78296 0.80138 0.76569 1.19119 1.22006 1.22341 1.19694 0.91416 0.85399 1.40763 0.90832 1.42519 1.05572 1.00600 1.87208 1.21621 0.94713 0.84243 0.93608 0.90980 1.24121 1.00741 0.96850 0.99644 1.21145 0.86128 0.92067 0.95045 0.89363 1.45750 1.23742 1.29017 1.35706 1.20879 0.87197 0.79696 0.81655 1.90648 1.58307 1.65270 1.30470 1.21633 0.92513 0.97154 0.99844 1.22256 0.98452 0.83406 0.94418 1.92723 1.95846 1.57681 1.73971 1.22298 1.02499 1.00100 0.92843 1.22670 0.95896 0.88479 0.95019 1.87895 1.92291 1.34189 1.16941 1.22821 0.98495 0.98877 0.82613 1.21966 1.01065 0.93539 0.99482 1.23227 0.97164 0.95767 0.95426 1.22597 0.97712 1.00579 0.94423 1.22757 0.96617 0.98480 0.98160 1.22457 0.93487 0.99763 0.99495 0.94079 0.78939 0.92823 0.91412 0.75053 0.89879 0.85630 0.89350 0.87133 0.86491 0.95044 0.87409 0.93216 0.87314 0.90029 0.90657 0.90001 0.89374 0.90710 0.91671 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.24 -13.34 9.98 84.03 0.84 -12.50 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.72 -36.05 5.34 -321.56 -1.72 -37.76 16 10 C 0.17 6.61 4.28 45.28 0.19 6.80 16 11 H 0.07 2.84 8.12 -2.38 -0.02 2.82 16 12 C -0.17 -6.31 7.68 31.23 0.24 -6.07 16 13 C 0.16 4.94 4.08 45.28 0.18 5.12 16 14 H 0.09 2.85 7.54 -2.39 -0.02 2.84 16 15 N -0.69 -17.32 4.44 -441.17 -1.96 -19.28 16 16 C 0.52 12.65 5.15 87.66 0.45 13.11 16 17 O -0.57 -17.65 13.48 -3.05 -0.04 -17.69 16 18 C -0.11 -1.74 0.54 -52.81 -0.03 -1.76 16 19 C 0.07 0.93 6.37 71.98 0.46 1.39 16 20 F -0.22 -4.22 14.69 44.97 0.66 -3.56 16 21 C -0.14 -1.84 4.70 30.69 0.14 -1.69 16 22 C 0.06 0.92 6.62 72.01 0.48 1.40 16 23 O -0.39 -7.76 10.77 -148.98 -1.60 -9.36 16 24 C 0.05 0.90 6.55 72.01 0.47 1.37 16 25 C -0.12 -1.78 4.56 30.68 0.14 -1.64 16 26 C -0.11 -3.57 0.91 -52.31 -0.05 -3.62 16 27 C -0.12 -3.05 7.59 30.88 0.23 -2.81 16 28 C -0.12 -3.06 8.08 31.23 0.25 -2.81 16 29 C -0.11 -3.64 7.16 30.88 0.22 -3.42 16 30 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.38 20.13 6.12 -92.71 -0.57 19.57 16 32 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.41 9.44 5.85 -92.71 -0.54 8.90 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 1.12 7.29 -2.39 -0.02 1.10 16 38 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.03 0.64 7.38 -2.39 -0.02 0.62 16 41 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.23 5.80 -2.39 -0.01 1.21 16 43 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.26 8.03 -2.38 -0.02 1.24 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.08 1.77 7.50 -2.39 -0.02 1.75 16 47 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 48 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.07 2.66 6.96 -2.38 -0.02 2.64 16 Total: -1.00 -69.22 386.83 2.19 -67.03 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -0.16 Total: 42.04 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.70 Total: -10.89 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -3.39 Total: -115.83 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.64 Total: -27.05 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.66 Total: -3.56 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -69.22 2.19 -67.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203411054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.150 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds