Wall clock time and date at job start Sat Apr 11 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47411 * 2 1 4 4 C 1.30992 * 120.00245 * 127.62229 * 3 2 1 5 5 C 1.50699 * 119.99918 * 7.33041 * 4 3 2 6 6 C 1.53005 * 109.47186 * 126.39978 * 5 4 3 7 7 N 1.46895 * 109.47174 * 179.97438 * 6 5 4 8 8 C 1.46904 * 111.00281 * 180.02562 * 7 6 5 9 9 C 1.52990 * 109.47296 * 180.02562 * 8 7 6 10 10 C 1.53039 * 109.46179 * 295.02452 * 9 8 7 11 11 C 1.53193 * 109.31621 * 178.60091 * 10 9 8 12 12 N 1.46929 * 108.76035 * 54.65761 * 11 10 9 13 13 C 1.34779 * 120.63145 * 126.36278 * 12 11 10 14 14 O 1.21277 * 120.00143 * 180.02562 * 13 12 11 15 15 C 1.50705 * 119.99757 * 0.02562 * 13 12 11 16 16 S 1.80997 * 109.46937 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99839 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00458 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99989 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99661 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46881 * 60.00070 * 21 19 17 23 23 H 1.48495 * 109.46962 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47220 * 300.00121 * 21 19 17 25 25 C 1.46927 * 118.73990 * 306.38196 * 12 11 10 26 26 C 1.53045 * 109.46118 * 174.97083 * 9 8 7 27 27 H 1.09007 * 109.47026 * 59.99825 * 1 2 3 28 28 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47450 * 300.00285 * 1 2 3 30 30 H 1.09003 * 109.47450 * 239.99715 * 2 1 3 31 31 H 1.08997 * 109.47076 * 120.00036 * 2 1 3 32 32 H 1.08001 * 119.99621 * 307.34912 * 3 2 1 33 33 H 1.08000 * 120.00361 * 187.32827 * 4 3 2 34 34 H 1.09003 * 109.47340 * 246.39654 * 5 4 3 35 35 H 1.08994 * 109.47365 * 6.39946 * 5 4 3 36 36 H 1.08999 * 109.47126 * 300.00338 * 6 5 4 37 37 H 1.09003 * 109.47168 * 59.99896 * 6 5 4 38 38 H 1.00903 * 111.00160 * 303.95527 * 7 6 5 39 39 H 1.09001 * 109.46479 * 299.99942 * 8 7 6 40 40 H 1.09003 * 109.46919 * 59.99588 * 8 7 6 41 41 H 1.09002 * 109.46400 * 54.99622 * 9 8 7 42 42 H 1.08998 * 109.49651 * 298.56959 * 10 9 8 43 43 H 1.09000 * 109.49604 * 58.66425 * 10 9 8 44 44 H 1.08996 * 109.60081 * 294.87221 * 11 10 9 45 45 H 1.09001 * 109.70176 * 174.50521 * 11 10 9 46 46 H 1.09006 * 109.46702 * 299.99754 * 15 13 12 47 47 H 1.08996 * 109.47661 * 59.99719 * 15 13 12 48 48 H 0.97001 * 119.99913 * 180.02562 * 20 19 17 49 49 H 1.09001 * 109.58282 * 293.82137 * 25 12 11 50 50 H 1.08998 * 109.70053 * 173.47209 * 25 12 11 51 51 H 1.08999 * 109.49661 * 301.33709 * 26 9 8 52 52 H 1.09007 * 109.49203 * 61.43148 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9036 1.8075 0.8985 5 6 3.5279 0.7973 1.8263 6 6 5.0520 0.9105 1.7524 7 7 5.6605 -0.0738 2.6573 8 6 7.1267 0.0063 2.6131 9 6 7.7231 -1.0317 3.5657 10 6 7.3411 -0.6813 5.0056 11 6 7.9104 -1.7418 5.9533 12 7 9.3572 -1.8533 5.7232 13 6 10.2266 -1.7321 6.7460 14 8 11.4186 -1.8257 6.5430 15 6 9.7173 -1.4804 8.1419 16 16 11.1174 -1.3663 9.2834 17 6 10.2576 -1.0775 10.7940 18 1 9.1791 -1.0214 10.7995 19 6 10.9665 -0.9221 11.9773 20 7 12.2810 -0.9900 11.9706 21 14 10.0552 -0.6152 13.5787 22 1 9.1420 -1.7534 13.8544 23 1 11.0337 -0.4863 14.6882 24 1 9.2653 0.6372 13.4665 25 6 9.8385 -2.0989 4.3569 26 6 9.2472 -1.0347 3.4271 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6774 2.1190 -0.7436 33 1 3.1746 2.8502 0.9744 34 1 3.1985 0.9896 2.8475 35 1 3.2232 -0.2061 1.5291 36 1 5.3814 0.7183 0.7313 37 1 5.3567 1.9139 2.0497 38 1 5.3206 0.0431 3.6001 39 1 7.4709 -0.1924 1.5981 40 1 7.4454 1.0037 2.9161 41 1 7.3339 -2.0190 3.3168 42 1 7.7512 0.2951 5.2634 43 1 6.2553 -0.6563 5.0981 44 1 7.4340 -2.7021 5.7560 45 1 7.7263 -1.4480 6.9867 46 1 9.1564 -0.5460 8.1609 47 1 9.0669 -2.3009 8.4449 48 1 12.7764 -0.8817 12.7975 49 1 9.5192 -3.0884 4.0295 50 1 10.9266 -2.0401 4.3344 51 1 9.5183 -1.2613 2.3960 52 1 9.6392 -0.0548 3.7000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204567157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:57 Heat of formation + Delta-G solvation = -59.288130 kcal Electronic energy + Delta-G solvation = -26353.370607 eV Core-core repulsion = 22670.590293 eV Total energy + Delta-G solvation = -3682.780314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19614 -39.13686 -38.05316 -36.53927 -34.59033 -34.32916 -32.71309 -32.00392 -30.62078 -29.31935 -27.70094 -26.89018 -24.39855 -24.20003 -23.67249 -22.92720 -21.54433 -20.30756 -19.48910 -19.15662 -18.14814 -17.36097 -16.94071 -16.86713 -16.65534 -16.12685 -15.96225 -15.79244 -15.54056 -15.22306 -15.02727 -14.75880 -14.63584 -14.48448 -14.45891 -14.07408 -13.93043 -13.48923 -13.29891 -13.17014 -13.03823 -12.93779 -12.86706 -12.77045 -12.61035 -12.52583 -12.22493 -12.16434 -11.84044 -11.73263 -11.65211 -11.43744 -11.35506 -11.17512 -11.13011 -10.83464 -10.26925 -9.81478 -9.66614 -9.35745 -8.68063 -8.34466 -6.13339 1.25511 1.33587 1.43933 1.45865 1.55571 1.57445 2.12613 2.27588 2.99553 3.18644 3.25439 3.65027 3.76452 3.84285 3.93594 4.03483 4.14099 4.20491 4.22847 4.24161 4.25799 4.35062 4.39318 4.43463 4.46342 4.52772 4.58017 4.62847 4.72020 4.73213 4.78732 4.82067 4.85527 4.88800 5.01232 5.06334 5.07741 5.08834 5.14695 5.17670 5.25393 5.27112 5.38797 5.41107 5.48726 5.61564 5.82766 5.98921 6.09215 6.19322 6.30748 6.48505 7.06370 7.14933 8.74599 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.001693 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.615077 B =16534.411130 C =17913.323040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.160 4.160 4 C -0.168 4.168 5 C -0.094 4.094 6 C 0.068 3.932 7 N -0.692 5.692 8 C 0.070 3.930 9 C -0.076 4.076 10 C -0.125 4.125 11 C 0.101 3.899 12 N -0.606 5.606 13 C 0.531 3.469 14 O -0.569 6.569 15 C -0.123 4.123 16 S -0.153 6.153 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.109 3.891 26 C -0.119 4.119 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.345 0.655 39 H 0.075 0.925 40 H 0.024 0.976 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.095 0.905 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.023 2.651 -25.325 35.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.178 4.178 4 C -0.186 4.186 5 C -0.132 4.132 6 C -0.061 4.061 7 N -0.324 5.324 8 C -0.059 4.059 9 C -0.095 4.095 10 C -0.164 4.164 11 C -0.021 4.021 12 N -0.340 5.340 13 C 0.318 3.682 14 O -0.448 6.448 15 C -0.274 4.274 16 S 0.074 5.926 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.013 4.013 26 C -0.158 4.158 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.164 0.836 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.113 0.887 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.158 2.004 -26.010 34.227 hybrid contribution -0.997 1.328 1.722 2.393 sum -23.155 3.332 -24.287 33.722 Atomic orbital electron populations 1.21695 0.94774 1.02037 1.01854 1.20855 0.96418 0.94427 1.02929 1.22975 0.98329 0.97996 0.98531 1.22808 0.98666 0.99404 0.97747 1.20775 0.93831 0.99284 0.99263 1.21822 0.94043 0.92927 0.97324 1.60519 1.05927 1.52649 1.13347 1.21898 0.87393 0.96783 0.99799 1.21076 0.93883 1.00516 0.93980 1.21970 1.01945 0.98012 0.94435 1.22010 0.78049 1.00964 1.01083 1.48142 1.07517 1.71136 1.07246 1.20146 0.85891 0.75606 0.86527 1.90665 1.17694 1.51638 1.84837 1.23365 1.03378 1.05879 0.94763 1.85593 1.10708 1.94434 1.01876 1.23167 0.95552 1.57181 0.93613 0.89878 1.26131 0.95830 0.93983 1.03102 1.70179 1.07662 1.47579 1.29334 0.85005 0.77839 0.79423 0.75741 1.18579 1.20383 1.18621 1.21683 0.99845 0.99681 0.80110 1.21871 0.95649 0.98328 0.99966 0.92481 0.92038 0.93014 0.91140 0.90491 0.86920 0.87181 0.91210 0.89765 0.91420 0.95527 0.83607 0.90655 0.95791 0.89177 0.92768 0.88315 0.89086 0.89567 0.87653 0.87483 0.91986 0.89648 0.91480 0.88687 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.11 -1.04 6.02 29.85 0.18 -0.86 16 3 C -0.16 -1.67 9.51 25.66 0.24 -1.43 16 4 C -0.17 -1.81 9.51 25.65 0.24 -1.56 16 5 C -0.09 -0.99 5.58 29.85 0.17 -0.82 16 6 C 0.07 0.78 5.67 86.31 0.49 1.27 16 7 N -0.69 -8.16 6.50 -513.89 -3.34 -11.50 16 8 C 0.07 0.89 5.14 86.30 0.44 1.34 16 9 C -0.08 -1.03 2.36 -10.77 -0.03 -1.05 16 10 C -0.13 -1.84 5.16 30.67 0.16 -1.68 16 11 C 0.10 1.93 6.34 86.36 0.55 2.47 16 12 N -0.61 -16.63 2.97 -818.90 -2.43 -19.06 16 13 C 0.53 20.66 7.72 87.66 0.68 21.34 16 14 O -0.57 -27.49 15.28 -3.02 -0.05 -27.54 16 15 C -0.12 -5.03 4.50 71.24 0.32 -4.70 16 16 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 17 C -0.55 -31.46 9.50 67.96 0.65 -30.82 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.32 13.22 21.65 0.29 -56.04 16 21 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 C 0.11 2.51 6.43 86.36 0.56 3.07 16 26 C -0.12 -2.03 5.36 30.67 0.16 -1.86 16 27 H 0.06 0.43 8.14 -2.38 -0.02 0.42 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.75 5.29 -2.39 -0.01 0.74 16 32 H 0.11 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.11 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.93 5.27 -2.39 -0.01 0.91 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.34 3.59 6.96 -89.69 -0.62 2.97 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.10 1.02 6.62 -2.39 -0.02 1.01 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 1.72 5.93 -2.39 -0.01 1.71 16 46 H 0.11 3.92 7.69 -2.39 -0.02 3.90 16 47 H 0.11 3.96 7.94 -2.40 -0.02 3.94 16 48 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.07 1.93 7.01 -2.39 -0.02 1.92 16 51 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -75.16 420.69 1.58 -73.58 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.26 Total: 19.34 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 5.99 Total: -14.54 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -5.49 Total: -86.60 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -75.16 1.58 -73.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204567157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.292 kcal (2) G-P(sol) polarization free energy of solvation -75.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds