Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99706 * 2 1 4 4 H 1.48508 * 109.46862 * 269.99816 * 3 2 1 5 5 H 1.48497 * 109.47312 * 30.00119 * 3 2 1 6 6 H 1.48499 * 109.47074 * 150.00230 * 3 2 1 7 7 C 1.38810 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99974 * 197.45596 * 7 2 1 9 9 N 1.36929 * 120.00043 * 17.46549 * 7 2 1 10 10 C 1.46938 * 120.56395 * 27.96164 * 9 7 2 11 11 C 1.53335 * 108.69177 * 125.64202 * 10 9 7 12 12 C 1.52141 * 109.45698 * 53.34225 * 11 10 9 13 13 C 1.54089 * 110.63344 * 64.33823 * 12 11 10 14 14 N 1.47546 * 104.74339 * 81.48701 * 13 12 11 15 15 C 1.34776 * 125.55715 * 203.74773 * 14 13 12 16 16 O 1.21281 * 120.00472 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99673 * 0.02994 * 15 14 13 18 18 C 1.53002 * 109.47027 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47471 * 179.97438 * 18 17 15 20 20 F 1.39891 * 109.47543 * 179.97438 * 19 18 17 21 21 C 1.46761 * 108.88743 * 23.76798 * 14 13 12 22 22 H 1.08996 * 111.72918 * 234.64674 * 21 14 13 23 23 C 1.53822 * 109.94113 * 109.90648 * 21 14 13 24 24 O 1.42907 * 107.17496 * 272.08627 * 23 21 14 25 25 C 1.42787 * 110.68805 * 342.00726 * 24 23 21 26 26 C 1.53807 * 108.43830 * 1.83336 * 25 24 23 27 27 H 1.08999 * 113.97711 * 250.68429 * 26 25 24 28 28 C 1.52122 * 111.54430 * 300.67594 * 12 11 10 29 29 C 1.46939 * 120.56366 * 207.94339 * 9 7 2 30 30 H 0.97001 * 120.00381 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.60006 * 5.87784 * 10 9 7 32 32 H 1.09004 * 109.73239 * 245.47825 * 10 9 7 33 33 H 1.09007 * 109.47480 * 293.34591 * 11 10 9 34 34 H 1.09000 * 109.47749 * 173.33684 * 11 10 9 35 35 H 1.09003 * 110.38324 * 200.30186 * 13 12 11 36 36 H 1.08999 * 110.38759 * 322.66916 * 13 12 11 37 37 H 1.09000 * 109.47063 * 299.98758 * 17 15 14 38 38 H 1.08999 * 109.47504 * 59.99259 * 17 15 14 39 39 H 1.09005 * 109.47129 * 299.99541 * 18 17 15 40 40 H 1.08999 * 109.47494 * 59.99362 * 18 17 15 41 41 H 1.09005 * 109.46859 * 300.00061 * 19 18 17 42 42 H 1.08999 * 109.46992 * 59.99411 * 19 18 17 43 43 H 1.09000 * 109.89822 * 31.47084 * 23 21 14 44 44 H 1.09001 * 109.90166 * 152.69505 * 23 21 14 45 45 H 1.09003 * 109.69058 * 121.60453 * 25 24 23 46 46 H 1.09000 * 109.68979 * 242.13920 * 25 24 23 47 47 H 1.09011 * 109.46876 * 179.30372 * 28 12 11 48 48 H 1.08999 * 109.47865 * 299.30655 * 28 12 11 49 49 H 1.08994 * 109.59489 * 354.10907 * 29 9 7 50 50 H 1.09000 * 109.60007 * 114.42463 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0529 -1.2235 0.2811 9 7 1.3730 -2.3608 -0.3548 10 6 0.2339 -2.3327 -1.2827 11 6 0.5222 -3.2917 -2.4439 12 6 0.8756 -4.6646 -1.8916 13 6 -0.3267 -5.2760 -1.1464 14 7 -1.1749 -5.8493 -2.2089 15 6 -2.4995 -6.0795 -2.1156 16 8 -3.0998 -6.5569 -3.0550 17 6 -3.2349 -5.7436 -0.8437 18 6 -4.7146 -6.0995 -1.0010 19 6 -5.4611 -5.7590 0.2904 20 9 -6.8141 -6.0839 0.1465 21 6 -0.3409 -6.1284 -3.3838 22 1 -0.7334 -5.6488 -4.2805 23 6 -0.1875 -7.6477 -3.5693 24 8 0.9408 -8.0558 -2.7929 25 6 1.7630 -6.9341 -2.4696 26 6 1.1050 -5.6674 -3.0426 27 1 1.6371 -5.2369 -3.8909 28 6 2.0956 -4.6049 -0.9849 29 6 1.8168 -3.6534 0.1848 30 1 -0.4851 0.8400 0.0004 31 1 0.1008 -1.3218 -1.6677 32 1 -0.6712 -2.6485 -0.7638 33 1 1.3575 -2.9103 -3.0313 34 1 -0.3612 -3.3713 -3.0774 35 1 0.0072 -6.0576 -0.4640 36 1 -0.8697 -4.5028 -0.6029 37 1 -2.8099 -6.3130 -0.0171 38 1 -3.1377 -4.6775 -0.6385 39 1 -5.1395 -5.5298 -1.8275 40 1 -4.8121 -7.1655 -1.2064 41 1 -5.0361 -6.3290 1.1167 42 1 -5.3636 -4.6931 0.4962 43 1 -1.0843 -8.1570 -3.2164 44 1 -0.0169 -7.8778 -4.6210 45 1 1.8523 -6.8439 -1.3870 46 1 2.7516 -7.0643 -2.9100 47 1 2.3107 -5.6015 -0.5992 48 1 2.9526 -4.2420 -1.5522 49 1 2.7274 -3.5132 0.7671 50 1 1.0367 -4.0713 0.8211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205507658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -108.245215 kcal Electronic energy + Delta-G solvation = -32088.882019 eV Core-core repulsion = 27837.765591 eV Total energy + Delta-G solvation = -4251.116428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -47.70456 -41.53666 -39.00977 -37.80124 -35.50252 -34.13050 -33.44592 -31.46586 -30.40260 -30.30213 -28.49242 -27.42846 -26.27534 -24.71092 -23.64143 -22.69396 -22.01544 -21.44928 -20.35492 -19.31142 -18.26535 -17.49672 -16.83568 -16.70040 -16.35720 -15.98872 -15.86535 -15.45930 -15.18337 -14.93567 -14.79627 -14.47137 -14.27857 -14.08925 -13.51437 -13.44303 -13.27312 -13.11107 -12.96071 -12.42684 -12.23995 -12.10035 -11.89637 -11.84495 -11.69787 -11.60041 -11.36985 -11.26196 -11.17660 -11.01731 -10.81757 -10.78545 -10.61716 -10.34970 -10.32323 -9.98655 -9.88255 -9.68107 -9.54158 -9.37022 -8.65379 -8.55756 -6.78706 -5.89630 -3.32047 2.59710 2.86621 3.31184 3.39095 3.39561 3.83970 4.04380 4.39109 4.40381 4.46783 4.58581 4.61546 4.81224 4.89020 4.90130 4.99983 5.03615 5.07676 5.11263 5.22822 5.30578 5.31764 5.39105 5.44774 5.50106 5.54862 5.65362 5.71571 5.74630 5.77618 5.81765 5.83531 5.92336 5.97759 6.06919 6.13497 6.25521 6.33281 6.46506 6.49985 6.54445 6.67950 6.79544 7.00048 7.19650 7.48399 7.51793 7.70484 8.11989 8.34270 9.10565 9.73723 10.29097 11.18753 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.004087 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.824604 B = 6849.002320 C = 9208.445846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.173 3.827 11 C -0.127 4.127 12 C -0.045 4.045 13 C 0.105 3.895 14 N -0.606 5.606 15 C 0.533 3.467 16 O -0.546 6.546 17 C -0.137 4.137 18 C -0.136 4.136 19 C 0.060 3.940 20 F -0.220 7.220 21 C 0.112 3.888 22 H 0.099 0.901 23 C 0.048 3.952 24 O -0.382 6.382 25 C 0.051 3.949 26 C -0.125 4.125 27 H 0.110 0.890 28 C -0.126 4.126 29 C 0.145 3.855 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.017 0.983 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 -12.727 -2.747 13.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.166 4.166 12 C -0.046 4.046 13 C -0.017 4.017 14 N -0.339 5.339 15 C 0.322 3.678 16 O -0.424 6.424 17 C -0.177 4.177 18 C -0.174 4.174 19 C 0.005 3.995 20 F -0.201 7.201 21 C 0.008 3.992 22 H 0.117 0.883 23 C -0.030 4.030 24 O -0.301 6.301 25 C -0.025 4.025 26 C -0.144 4.144 27 H 0.128 0.872 28 C -0.166 4.166 29 C 0.018 3.982 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.373 -13.049 -3.137 13.629 hybrid contribution 0.423 1.193 -0.149 1.275 sum -1.950 -11.856 -3.286 12.457 Atomic orbital electron populations 1.70009 1.05273 1.25627 1.53753 1.25012 0.95250 0.98405 1.00722 0.86313 0.79179 0.83684 0.77728 1.21447 1.21756 1.20406 1.19189 0.92797 0.84854 1.41573 0.91628 1.44040 1.36215 1.01407 1.49584 1.20805 0.88546 0.98443 0.87537 1.22039 1.00336 0.94033 1.00234 1.20998 0.94883 0.95062 0.93667 1.22568 0.91764 0.97414 0.89982 1.48464 1.07035 1.62715 1.15682 1.20240 0.80213 0.77607 0.89691 1.90693 1.66517 1.45043 1.40179 1.21548 0.95271 1.04542 0.96354 1.21889 0.93562 1.03976 0.97965 1.22017 0.76597 1.02101 0.98747 1.92758 1.35508 1.94640 1.97192 1.22742 0.90876 0.95261 0.90300 0.88327 1.23348 0.89641 0.94195 0.95776 1.88148 1.36902 1.31996 1.73054 1.23316 0.94042 0.84004 1.01095 1.23625 0.93834 0.96916 0.99983 0.87231 1.22077 0.96306 0.99669 0.98521 1.20936 0.97804 0.86927 0.92507 0.93577 0.89296 0.96457 0.92090 0.93212 0.91383 0.88987 0.88525 0.87926 0.89953 0.90166 0.90682 0.90367 0.89747 0.91689 0.89786 0.91498 0.92050 0.91413 0.92541 0.96389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 11.20 55.49 0.62 -23.95 16 2 C 0.00 0.13 4.90 -17.43 -0.09 0.04 16 3 Si 0.90 20.66 29.59 -169.99 -5.03 15.63 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.25 -6.46 9.57 -15.06 -0.14 -6.60 16 8 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -13.10 2.98 -172.13 -0.51 -13.61 16 10 C 0.17 3.62 5.01 -3.63 -0.02 3.60 16 11 C -0.13 -2.10 4.89 -27.00 -0.13 -2.23 16 12 C -0.05 -0.62 0.37 -154.10 -0.06 -0.67 16 13 C 0.10 1.37 4.21 -2.90 -0.01 1.36 16 14 N -0.61 -8.03 2.98 -162.39 -0.48 -8.52 16 15 C 0.53 7.36 7.47 -10.98 -0.08 7.28 16 16 O -0.55 -9.06 15.78 5.56 0.09 -8.97 16 17 C -0.14 -1.47 4.71 -27.88 -0.13 -1.60 16 18 C -0.14 -1.44 4.96 -26.73 -0.13 -1.57 16 19 C 0.06 0.56 7.55 37.16 0.28 0.84 16 20 F -0.22 -2.66 17.36 2.25 0.04 -2.62 16 21 C 0.11 1.43 3.35 -66.00 -0.22 1.21 16 22 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 23 C 0.05 0.61 7.34 37.59 0.28 0.88 16 24 O -0.38 -5.16 11.27 -35.23 -0.40 -5.55 16 25 C 0.05 0.60 6.46 37.58 0.24 0.84 16 26 C -0.12 -1.48 3.44 -88.12 -0.30 -1.78 16 27 H 0.11 1.21 8.13 -51.93 -0.42 0.79 16 28 C -0.13 -1.78 4.42 -27.01 -0.12 -1.90 16 29 C 0.14 2.58 6.24 -3.63 -0.02 2.56 16 30 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.09 2.20 6.01 -51.93 -0.31 1.88 16 32 H 0.02 0.38 6.58 -51.93 -0.34 0.04 16 33 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 35 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 36 H 0.09 1.32 5.53 -51.93 -0.29 1.03 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.07 7.85 -51.93 -0.41 0.66 16 39 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.18 7.30 -51.93 -0.38 0.80 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.97 4.61 -51.93 -0.24 0.73 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.73 5.57 -51.92 -0.29 0.44 16 48 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.06 1.01 7.93 -51.93 -0.41 0.60 16 50 H 0.02 0.32 7.64 -51.93 -0.40 -0.08 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -29.58 377.34 -8.70 -38.29 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.05 Total: 1.36 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.66 Total: 2.26 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.38 Total: -46.08 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.31 Total: -14.53 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.58 -8.70 -38.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205507658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.957 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds