Wall clock time and date at job start Sat Apr 11 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99706 * 2 1 4 4 H 1.48508 * 109.46862 * 269.99816 * 3 2 1 5 5 H 1.48497 * 109.47312 * 30.00119 * 3 2 1 6 6 H 1.48499 * 109.47074 * 150.00230 * 3 2 1 7 7 C 1.38810 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99974 * 197.45596 * 7 2 1 9 9 N 1.36929 * 120.00043 * 17.46549 * 7 2 1 10 10 C 1.46938 * 120.56395 * 27.96164 * 9 7 2 11 11 C 1.53335 * 108.69177 * 125.64202 * 10 9 7 12 12 C 1.52141 * 109.45698 * 53.34225 * 11 10 9 13 13 C 1.54089 * 110.63344 * 64.33823 * 12 11 10 14 14 N 1.47546 * 104.74339 * 81.48701 * 13 12 11 15 15 C 1.34776 * 125.55715 * 203.74773 * 14 13 12 16 16 O 1.21281 * 120.00472 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99673 * 0.02994 * 15 14 13 18 18 C 1.53002 * 109.47027 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47471 * 179.97438 * 18 17 15 20 20 F 1.39891 * 109.47543 * 179.97438 * 19 18 17 21 21 C 1.46761 * 108.88743 * 23.76798 * 14 13 12 22 22 H 1.08996 * 111.72918 * 234.64674 * 21 14 13 23 23 C 1.53822 * 109.94113 * 109.90648 * 21 14 13 24 24 O 1.42907 * 107.17496 * 272.08627 * 23 21 14 25 25 C 1.42787 * 110.68805 * 342.00726 * 24 23 21 26 26 C 1.53807 * 108.43830 * 1.83336 * 25 24 23 27 27 H 1.08999 * 113.97711 * 250.68429 * 26 25 24 28 28 C 1.52122 * 111.54430 * 300.67594 * 12 11 10 29 29 C 1.46939 * 120.56366 * 207.94339 * 9 7 2 30 30 H 0.97001 * 120.00381 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.60006 * 5.87784 * 10 9 7 32 32 H 1.09004 * 109.73239 * 245.47825 * 10 9 7 33 33 H 1.09007 * 109.47480 * 293.34591 * 11 10 9 34 34 H 1.09000 * 109.47749 * 173.33684 * 11 10 9 35 35 H 1.09003 * 110.38324 * 200.30186 * 13 12 11 36 36 H 1.08999 * 110.38759 * 322.66916 * 13 12 11 37 37 H 1.09000 * 109.47063 * 299.98758 * 17 15 14 38 38 H 1.08999 * 109.47504 * 59.99259 * 17 15 14 39 39 H 1.09005 * 109.47129 * 299.99541 * 18 17 15 40 40 H 1.08999 * 109.47494 * 59.99362 * 18 17 15 41 41 H 1.09005 * 109.46859 * 300.00061 * 19 18 17 42 42 H 1.08999 * 109.46992 * 59.99411 * 19 18 17 43 43 H 1.09000 * 109.89822 * 31.47084 * 23 21 14 44 44 H 1.09001 * 109.90166 * 152.69505 * 23 21 14 45 45 H 1.09003 * 109.69058 * 121.60453 * 25 24 23 46 46 H 1.09000 * 109.68979 * 242.13920 * 25 24 23 47 47 H 1.09011 * 109.46876 * 179.30372 * 28 12 11 48 48 H 1.08999 * 109.47865 * 299.30655 * 28 12 11 49 49 H 1.08994 * 109.59489 * 354.10907 * 29 9 7 50 50 H 1.09000 * 109.60007 * 114.42463 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0529 -1.2235 0.2811 9 7 1.3730 -2.3608 -0.3548 10 6 0.2339 -2.3327 -1.2827 11 6 0.5222 -3.2917 -2.4439 12 6 0.8756 -4.6646 -1.8916 13 6 -0.3267 -5.2760 -1.1464 14 7 -1.1749 -5.8493 -2.2089 15 6 -2.4995 -6.0795 -2.1156 16 8 -3.0998 -6.5569 -3.0550 17 6 -3.2349 -5.7436 -0.8437 18 6 -4.7146 -6.0995 -1.0010 19 6 -5.4611 -5.7590 0.2904 20 9 -6.8141 -6.0839 0.1465 21 6 -0.3409 -6.1284 -3.3838 22 1 -0.7334 -5.6488 -4.2805 23 6 -0.1875 -7.6477 -3.5693 24 8 0.9408 -8.0558 -2.7929 25 6 1.7630 -6.9341 -2.4696 26 6 1.1050 -5.6674 -3.0426 27 1 1.6371 -5.2369 -3.8909 28 6 2.0956 -4.6049 -0.9849 29 6 1.8168 -3.6534 0.1848 30 1 -0.4851 0.8400 0.0004 31 1 0.1008 -1.3218 -1.6677 32 1 -0.6712 -2.6485 -0.7638 33 1 1.3575 -2.9103 -3.0313 34 1 -0.3612 -3.3713 -3.0774 35 1 0.0072 -6.0576 -0.4640 36 1 -0.8697 -4.5028 -0.6029 37 1 -2.8099 -6.3130 -0.0171 38 1 -3.1377 -4.6775 -0.6385 39 1 -5.1395 -5.5298 -1.8275 40 1 -4.8121 -7.1655 -1.2064 41 1 -5.0361 -6.3290 1.1167 42 1 -5.3636 -4.6931 0.4962 43 1 -1.0843 -8.1570 -3.2164 44 1 -0.0169 -7.8778 -4.6210 45 1 1.8523 -6.8439 -1.3870 46 1 2.7516 -7.0643 -2.9100 47 1 2.3107 -5.6015 -0.5992 48 1 2.9526 -4.2420 -1.5522 49 1 2.7274 -3.5132 0.7671 50 1 1.0367 -4.0713 0.8211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205507658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:10 Heat of formation + Delta-G solvation = -125.216101 kcal Electronic energy + Delta-G solvation = -32089.617932 eV Core-core repulsion = 27837.765591 eV Total energy + Delta-G solvation = -4251.852341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.57259 -42.60871 -40.11615 -39.04553 -36.82314 -35.03811 -34.88722 -32.98466 -31.82904 -31.47171 -29.70537 -28.40081 -27.46716 -26.25304 -24.83234 -23.78523 -23.33978 -22.50871 -21.59208 -20.41161 -19.56635 -18.70616 -18.25588 -17.60958 -17.29214 -17.16311 -16.85057 -16.65325 -16.45862 -16.11051 -15.81392 -15.63038 -15.50387 -15.35452 -14.96942 -14.78189 -14.63734 -14.28438 -14.12150 -13.67955 -13.32691 -13.22163 -13.14482 -13.06462 -12.83374 -12.80180 -12.57489 -12.50173 -12.46270 -12.37035 -12.10903 -12.02879 -11.93851 -11.80983 -11.57870 -11.48066 -11.11524 -11.04858 -10.88143 -10.47468 -10.36245 -9.72950 -8.61026 -7.84105 -5.27163 1.47794 1.50787 1.52941 1.57511 1.85222 2.53801 2.87725 3.04777 3.28030 3.41807 3.48354 3.70587 3.72837 3.78621 3.84457 3.88720 4.02692 4.05993 4.10178 4.18785 4.24381 4.29248 4.34141 4.41269 4.53187 4.57429 4.65093 4.67612 4.70140 4.72722 4.74754 4.76962 4.84999 4.93727 4.96503 4.98290 5.10530 5.18271 5.21425 5.26100 5.32909 5.34172 5.43554 5.57665 5.70008 5.81729 6.05238 6.42325 6.43699 7.05162 7.20285 7.93035 8.41955 9.21267 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.004087 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.824604 B = 6849.002320 C = 9208.445846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.955 3.045 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.269 1.269 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.607 5.607 10 C 0.181 3.819 11 C -0.111 4.111 12 C -0.042 4.042 13 C 0.110 3.890 14 N -0.605 5.605 15 C 0.526 3.474 16 O -0.579 6.579 17 C -0.131 4.131 18 C -0.130 4.130 19 C 0.059 3.941 20 F -0.236 7.236 21 C 0.106 3.894 22 H 0.095 0.905 23 C 0.054 3.946 24 O -0.394 6.394 25 C 0.052 3.948 26 C -0.111 4.111 27 H 0.124 0.876 28 C -0.113 4.113 29 C 0.140 3.860 30 H 0.247 0.753 31 H 0.046 0.954 32 H 0.005 0.995 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 -14.250 -2.457 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.785 3.215 4 H -0.217 1.217 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.056 3.944 11 C -0.150 4.150 12 C -0.043 4.043 13 C -0.012 4.012 14 N -0.338 5.338 15 C 0.317 3.683 16 O -0.460 6.460 17 C -0.171 4.171 18 C -0.168 4.168 19 C 0.005 3.995 20 F -0.218 7.218 21 C 0.002 3.998 22 H 0.113 0.887 23 C -0.023 4.023 24 O -0.314 6.314 25 C -0.023 4.023 26 C -0.130 4.130 27 H 0.142 0.858 28 C -0.152 4.152 29 C 0.015 3.985 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.113 0.887 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.725 -14.596 -2.840 14.888 hybrid contribution -0.060 1.636 -0.230 1.654 sum -0.785 -12.960 -3.070 13.342 Atomic orbital electron populations 1.70144 1.06439 1.25560 1.55681 1.25627 0.95861 1.01002 1.01651 0.85440 0.78332 0.80413 0.77318 1.21679 1.22589 1.19366 1.19491 0.92987 0.86191 1.40017 0.91627 1.44265 1.36208 1.02232 1.50291 1.20554 0.88061 0.97217 0.88608 1.21779 1.00217 0.94752 0.98265 1.20876 0.95122 0.93746 0.94528 1.22524 0.91253 0.97520 0.89947 1.48522 1.07064 1.62279 1.15929 1.20779 0.80346 0.76953 0.90231 1.90676 1.67138 1.46630 1.41526 1.21561 0.94894 1.05058 0.95558 1.21798 0.93728 1.03084 0.98194 1.22166 0.75442 1.03290 0.98625 1.92724 1.36955 1.94824 1.97270 1.22842 0.91313 0.95571 0.90115 0.88697 1.23268 0.89023 0.93644 0.96414 1.88139 1.37139 1.32844 1.73291 1.23404 0.94478 0.82978 1.01487 1.23577 0.93460 0.96479 0.99488 0.85827 1.21941 0.96127 1.00233 0.96892 1.21120 0.97641 0.85678 0.94102 0.94345 0.93540 0.97702 0.92595 0.92984 0.89602 0.90265 0.86090 0.87563 0.91849 0.90981 0.88165 0.89258 0.91361 0.90284 0.89295 0.89528 0.88724 0.91465 0.92767 0.95803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.08 11.20 21.65 0.24 -51.84 16 2 C -0.05 -2.41 4.90 84.86 0.42 -2.00 16 3 Si 0.96 42.90 29.59 68.60 2.03 44.93 16 4 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.26 -12.99 9.57 84.03 0.80 -12.19 16 8 H 0.07 3.26 7.89 -2.91 -0.02 3.24 16 9 N -0.61 -26.71 2.98 -698.50 -2.08 -28.79 16 10 C 0.18 7.70 5.01 86.41 0.43 8.13 16 11 C -0.11 -3.56 4.89 30.42 0.15 -3.41 16 12 C -0.04 -1.04 0.37 -51.92 -0.02 -1.06 16 13 C 0.11 2.62 4.21 86.55 0.36 2.99 16 14 N -0.61 -15.11 2.98 -786.07 -2.34 -17.46 16 15 C 0.53 14.13 7.47 87.66 0.65 14.79 16 16 O -0.58 -19.23 15.78 -3.03 -0.05 -19.28 16 17 C -0.13 -2.64 4.71 29.85 0.14 -2.50 16 18 C -0.13 -2.69 4.96 30.59 0.15 -2.54 16 19 C 0.06 1.03 7.55 71.98 0.54 1.57 16 20 F -0.24 -5.58 17.36 44.97 0.78 -4.80 16 21 C 0.11 2.48 3.35 46.10 0.15 2.63 16 22 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 23 C 0.05 1.25 7.34 72.26 0.53 1.78 16 24 O -0.39 -9.42 11.27 -148.98 -1.68 -11.10 16 25 C 0.05 1.00 6.46 72.25 0.47 1.46 16 26 C -0.11 -2.29 3.44 -9.17 -0.03 -2.32 16 27 H 0.12 2.27 8.13 -2.39 -0.02 2.25 16 28 C -0.11 -2.81 4.42 30.42 0.13 -2.67 16 29 C 0.14 4.71 6.24 86.41 0.54 5.25 16 30 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 31 H 0.05 2.37 6.01 -2.39 -0.01 2.36 16 32 H 0.01 0.22 6.58 -2.39 -0.02 0.21 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.05 1.64 7.83 -2.39 -0.02 1.62 16 35 H 0.09 1.80 7.44 -2.39 -0.02 1.78 16 36 H 0.08 2.15 5.53 -2.39 -0.01 2.14 16 37 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.11 2.10 7.85 -2.39 -0.02 2.08 16 39 H 0.06 1.54 8.10 -2.38 -0.02 1.52 16 40 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 41 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.83 7.30 -2.39 -0.02 1.81 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 1.61 4.61 -2.39 -0.01 1.60 16 46 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.09 1.79 5.57 -2.38 -0.01 1.78 16 48 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 50 H 0.02 0.79 7.64 -2.39 -0.02 0.77 16 Total: -1.00 -65.15 377.34 3.27 -61.87 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.94 Total: 16.55 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 5.43 Total: 9.92 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.18 Total: -98.09 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -1.73 Total: -30.39 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.78 Total: -4.80 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -65.15 3.27 -61.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205507658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.342 kcal (2) G-P(sol) polarization free energy of solvation -65.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds