Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47072 * 2 1 4 4 C 1.50694 * 109.46931 * 179.97438 * 3 2 1 5 5 C 1.31004 * 119.99821 * 126.33161 * 4 3 2 6 6 C 1.50696 * 120.00088 * 7.54239 * 5 4 3 7 7 C 1.52999 * 109.47267 * 127.61861 * 6 5 4 8 8 N 1.46895 * 109.47224 * 180.02562 * 7 6 5 9 9 C 1.47899 * 111.00048 * 169.99656 * 8 7 6 10 10 C 1.53992 * 107.22877 * 214.25080 * 9 8 7 11 11 H 1.08998 * 110.31243 * 120.14115 * 10 9 8 12 12 C 1.53000 * 110.31157 * 242.21348 * 10 9 8 13 13 C 1.54602 * 105.13735 * 1.13069 * 10 9 8 14 14 H 1.09006 * 110.72099 * 263.41541 * 13 10 9 15 15 N 1.46497 * 110.72708 * 140.31569 * 13 10 9 16 16 C 1.34778 * 120.00433 * 154.99858 * 15 13 10 17 17 O 1.21277 * 119.99762 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00009 * 179.97438 * 16 15 13 19 19 S 1.81004 * 109.46796 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99920 * 179.97438 * 19 18 16 21 21 H 1.08008 * 120.00305 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00333 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00574 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99803 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47471 * 89.99514 * 24 22 20 26 26 H 1.48496 * 109.47130 * 209.99870 * 24 22 20 27 27 H 1.48504 * 109.47091 * 329.99546 * 24 22 20 28 28 C 1.48809 * 111.18610 * 52.66002 * 8 7 6 29 29 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46933 * 300.00201 * 1 2 3 31 31 H 1.08999 * 109.46982 * 60.00280 * 1 2 3 32 32 H 1.09001 * 109.47651 * 240.00001 * 2 1 3 33 33 H 1.08999 * 109.46982 * 119.99720 * 2 1 3 34 34 H 1.08995 * 109.46591 * 59.99855 * 3 2 1 35 35 H 1.08999 * 109.46988 * 299.99716 * 3 2 1 36 36 H 1.08003 * 120.00400 * 306.33301 * 4 3 2 37 37 H 1.08005 * 119.99859 * 187.53968 * 5 4 3 38 38 H 1.08995 * 109.47186 * 7.61849 * 6 5 4 39 39 H 1.09002 * 109.47220 * 247.61602 * 6 5 4 40 40 H 1.08998 * 109.47215 * 59.99390 * 7 6 5 41 41 H 1.09002 * 109.46789 * 300.00005 * 7 6 5 42 42 H 1.09005 * 109.91947 * 94.80474 * 9 8 7 43 43 H 1.08994 * 109.92340 * 333.70580 * 9 8 7 44 44 H 1.08995 * 109.46991 * 58.54574 * 12 10 9 45 45 H 1.09003 * 109.47027 * 178.54764 * 12 10 9 46 46 H 1.09001 * 109.46799 * 298.54363 * 12 10 9 47 47 H 0.97005 * 119.99942 * 334.99866 * 15 13 10 48 48 H 1.08994 * 109.47172 * 300.00110 * 18 16 15 49 49 H 1.09001 * 109.47219 * 60.00100 * 18 16 15 50 50 H 0.96996 * 120.00351 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.52497 * 41.07508 * 28 8 7 52 52 H 1.08999 * 110.84119 * 278.08937 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2023 2.1146 -0.9132 6 6 3.4590 3.0223 -1.8589 7 6 4.0965 4.4130 -1.8378 8 7 3.3715 5.2980 -2.7593 9 6 3.8009 6.7034 -2.5922 10 6 2.5663 7.5900 -2.8394 11 1 2.3452 8.1862 -1.9541 12 6 2.7992 8.5002 -4.0470 13 6 1.4114 6.6030 -3.1262 14 1 1.2694 6.4769 -4.1996 15 7 0.1717 7.0568 -2.4911 16 6 -1.0204 6.6732 -2.9893 17 8 -1.0668 5.9526 -3.9637 18 6 -2.2956 7.1396 -2.3356 19 16 -3.7153 6.4611 -3.2301 20 6 -5.0315 7.1453 -2.2793 21 1 -4.8131 7.7755 -1.4297 22 6 -6.3489 6.8746 -2.6220 23 7 -7.3322 7.3862 -1.9120 24 14 -6.7267 5.7841 -4.0909 25 1 -6.8117 4.3692 -3.6482 26 1 -8.0216 6.1936 -4.6914 27 1 -5.6469 5.9227 -5.1010 28 6 1.9105 5.2877 -2.4770 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 4.0867 0.8885 0.7544 37 1 5.2754 2.0181 -0.9887 38 1 2.4168 3.0956 -1.5484 39 1 3.5096 2.6148 -2.8687 40 1 5.1387 4.3398 -2.1482 41 1 4.0459 4.8205 -0.8281 42 1 4.5802 6.9421 -3.3160 43 1 4.1738 6.8601 -1.5801 44 1 3.0077 7.8909 -4.9263 45 1 1.9084 9.1025 -4.2251 46 1 3.6475 9.1556 -3.8496 47 1 0.2089 7.6335 -1.7120 48 1 -2.3199 6.7971 -1.3011 49 1 -2.3386 8.2285 -2.3588 50 1 -8.2529 7.1967 -2.1513 51 1 1.7288 5.2961 -1.4023 52 1 1.4322 4.4246 -2.9400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206090060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = -36.146261 kcal Electronic energy + Delta-G solvation = -27243.510108 eV Core-core repulsion = 23561.733301 eV Total energy + Delta-G solvation = -3681.776807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.20019 -38.66154 -37.27200 -35.01112 -33.60703 -32.61685 -32.44300 -30.16533 -29.53250 -27.85175 -26.65969 -25.62768 -25.25439 -23.35775 -21.86544 -21.09560 -20.72474 -20.25559 -18.60438 -17.82926 -16.90799 -16.46274 -16.28221 -15.64983 -15.26750 -15.01705 -14.79238 -14.73122 -14.69216 -14.10752 -13.81364 -13.75849 -13.60401 -13.46371 -13.35995 -12.89632 -12.79859 -12.64024 -12.55720 -12.30273 -12.16916 -11.78154 -11.62904 -11.48950 -11.38857 -11.26393 -11.19739 -11.15763 -11.01171 -10.91394 -10.88618 -10.59695 -10.48325 -9.86175 -9.53604 -9.20002 -9.03026 -8.97875 -8.68532 -8.50672 -6.92365 -6.29537 -4.01281 1.92515 2.73632 2.94168 3.24401 3.33055 3.50340 3.58112 3.85413 4.22636 4.32799 4.42697 4.47281 4.59612 4.73867 4.75275 4.75952 4.89660 4.92785 4.94612 5.05958 5.09125 5.09878 5.20255 5.22578 5.25776 5.31104 5.31630 5.35826 5.46121 5.54969 5.58870 5.66609 5.69312 5.72437 5.74913 5.78248 5.82903 5.86865 5.87363 5.92820 5.97244 5.99784 6.04331 6.11977 6.36164 6.45254 6.57691 6.69067 6.76399 7.58823 7.93510 8.40877 8.47759 9.16710 10.79731 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008303 B = 0.002874 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.533408 B = 9740.629409 C =12514.222653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.105 4.105 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.104 4.104 7 C 0.056 3.944 8 N -0.515 5.515 9 C 0.042 3.958 10 C -0.109 4.109 11 H 0.080 0.920 12 C -0.141 4.141 13 C 0.148 3.852 14 H 0.106 0.894 15 N -0.730 5.730 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.124 4.124 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.024 3.976 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.398 0.602 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.271 0.729 51 H 0.048 0.952 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.629 -5.876 3.713 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.142 4.142 4 C -0.174 4.174 5 C -0.178 4.178 6 C -0.141 4.141 7 C -0.072 4.072 8 N -0.239 5.239 9 C -0.087 4.087 10 C -0.129 4.129 11 H 0.098 0.902 12 C -0.199 4.199 13 C 0.042 3.958 14 H 0.124 0.876 15 N -0.383 5.383 16 C 0.318 3.682 17 O -0.389 6.389 18 C -0.275 4.275 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.105 4.105 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.233 0.767 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.081 0.919 51 H 0.067 0.933 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 26.460 -7.246 1.581 27.479 hybrid contribution -0.392 0.955 2.062 2.306 sum 26.068 -6.290 3.643 27.062 Atomic orbital electron populations 1.21808 0.95454 1.01770 1.02332 1.21434 0.95975 0.96128 1.01847 1.20942 0.92738 0.97543 1.02988 1.22830 0.96036 1.00121 0.98420 1.22725 0.99547 0.98299 0.97209 1.20936 0.99883 0.93419 0.99829 1.22217 0.98435 0.92643 0.93919 1.64824 1.03443 1.06033 1.49580 1.22947 0.97359 0.87851 1.00508 1.22266 0.94396 0.96490 0.99724 0.90189 1.21819 1.01797 0.99077 0.97194 1.21866 0.82710 0.92018 0.99249 0.87590 1.45983 1.05028 1.53528 1.33802 1.20303 0.84371 0.79773 0.83773 1.90706 1.86908 1.35543 1.25792 1.23283 0.95631 1.04828 1.03772 1.84795 0.96963 1.67620 1.42028 1.22318 0.91281 1.36245 1.17064 0.89421 1.24713 0.95027 0.95042 0.96524 1.69935 0.99534 1.43285 1.38989 0.86739 0.79834 0.81392 0.83919 1.19193 1.19946 1.15880 1.23690 0.88279 0.99437 0.99093 0.92704 0.92620 0.92329 0.92042 0.92233 0.91318 0.90408 0.87457 0.87378 0.90188 0.90257 0.90549 0.94678 0.89861 0.93614 0.91877 0.92182 0.92440 0.76727 0.88570 0.88484 0.91934 0.93341 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 3 C -0.11 -0.90 5.32 -27.88 -0.15 -1.05 16 4 C -0.16 -1.25 9.51 -36.03 -0.34 -1.59 16 5 C -0.16 -1.25 9.51 -36.03 -0.34 -1.60 16 6 C -0.10 -0.90 4.97 -27.89 -0.14 -1.04 16 7 C 0.06 0.47 5.01 -3.83 -0.02 0.45 16 8 N -0.51 -4.96 5.40 -230.22 -1.24 -6.21 16 9 C 0.04 0.34 6.35 -2.76 -0.02 0.32 16 10 C -0.11 -0.93 3.32 -89.26 -0.30 -1.22 16 11 H 0.08 0.60 7.75 -51.93 -0.40 0.20 16 12 C -0.14 -1.15 8.89 37.16 0.33 -0.82 16 13 C 0.15 1.68 2.98 -66.07 -0.20 1.49 16 14 H 0.11 1.47 7.26 -51.93 -0.38 1.09 16 15 N -0.73 -9.00 5.18 -52.00 -0.27 -9.27 16 16 C 0.53 9.17 7.85 -10.99 -0.09 9.09 16 17 O -0.52 -10.87 15.51 5.56 0.09 -10.78 16 18 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 19 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 20 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 21 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 24 Si 0.86 21.74 27.74 -169.99 -4.72 17.02 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.23 -5.95 6.74 56.52 0.38 -5.57 16 28 C 0.02 0.26 4.80 -1.74 -0.01 0.26 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.73 5.28 -51.93 -0.27 0.46 16 36 H 0.11 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.11 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.08 0.77 3.97 -51.93 -0.21 0.56 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.03 0.30 7.81 -51.93 -0.41 -0.11 16 42 H 0.08 0.63 7.68 -51.93 -0.40 0.23 16 43 H 0.05 0.34 7.57 -51.93 -0.39 -0.06 16 44 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.40 3.82 8.39 -40.82 -0.34 3.47 16 48 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 49 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 50 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.05 0.52 8.00 -51.93 -0.42 0.11 16 52 H 0.09 1.15 7.69 -51.93 -0.40 0.75 16 LS Contribution 423.03 15.07 6.37 6.37 Total: -1.00 -32.58 423.03 -11.14 -43.72 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -9.53 Total: 2.35 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.62 Total: -11.92 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.74 Total: -41.24 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.58 -11.14 -43.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.576 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds