Wall clock time and date at job start Sat Apr 11 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47072 * 2 1 4 4 C 1.50694 * 109.46931 * 179.97438 * 3 2 1 5 5 C 1.31004 * 119.99821 * 126.33161 * 4 3 2 6 6 C 1.50696 * 120.00088 * 7.54239 * 5 4 3 7 7 C 1.52999 * 109.47267 * 127.61861 * 6 5 4 8 8 N 1.46895 * 109.47224 * 180.02562 * 7 6 5 9 9 C 1.47899 * 111.00048 * 169.99656 * 8 7 6 10 10 C 1.53992 * 107.22877 * 214.25080 * 9 8 7 11 11 H 1.08998 * 110.31243 * 120.14115 * 10 9 8 12 12 C 1.53000 * 110.31157 * 242.21348 * 10 9 8 13 13 C 1.54602 * 105.13735 * 1.13069 * 10 9 8 14 14 H 1.09006 * 110.72099 * 263.41541 * 13 10 9 15 15 N 1.46497 * 110.72708 * 140.31569 * 13 10 9 16 16 C 1.34778 * 120.00433 * 154.99858 * 15 13 10 17 17 O 1.21277 * 119.99762 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00009 * 179.97438 * 16 15 13 19 19 S 1.81004 * 109.46796 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99920 * 179.97438 * 19 18 16 21 21 H 1.08008 * 120.00305 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00333 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00574 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99803 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47471 * 89.99514 * 24 22 20 26 26 H 1.48496 * 109.47130 * 209.99870 * 24 22 20 27 27 H 1.48504 * 109.47091 * 329.99546 * 24 22 20 28 28 C 1.48809 * 111.18610 * 52.66002 * 8 7 6 29 29 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46933 * 300.00201 * 1 2 3 31 31 H 1.08999 * 109.46982 * 60.00280 * 1 2 3 32 32 H 1.09001 * 109.47651 * 240.00001 * 2 1 3 33 33 H 1.08999 * 109.46982 * 119.99720 * 2 1 3 34 34 H 1.08995 * 109.46591 * 59.99855 * 3 2 1 35 35 H 1.08999 * 109.46988 * 299.99716 * 3 2 1 36 36 H 1.08003 * 120.00400 * 306.33301 * 4 3 2 37 37 H 1.08005 * 119.99859 * 187.53968 * 5 4 3 38 38 H 1.08995 * 109.47186 * 7.61849 * 6 5 4 39 39 H 1.09002 * 109.47220 * 247.61602 * 6 5 4 40 40 H 1.08998 * 109.47215 * 59.99390 * 7 6 5 41 41 H 1.09002 * 109.46789 * 300.00005 * 7 6 5 42 42 H 1.09005 * 109.91947 * 94.80474 * 9 8 7 43 43 H 1.08994 * 109.92340 * 333.70580 * 9 8 7 44 44 H 1.08995 * 109.46991 * 58.54574 * 12 10 9 45 45 H 1.09003 * 109.47027 * 178.54764 * 12 10 9 46 46 H 1.09001 * 109.46799 * 298.54363 * 12 10 9 47 47 H 0.97005 * 119.99942 * 334.99866 * 15 13 10 48 48 H 1.08994 * 109.47172 * 300.00110 * 18 16 15 49 49 H 1.09001 * 109.47219 * 60.00100 * 18 16 15 50 50 H 0.96996 * 120.00351 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.52497 * 41.07508 * 28 8 7 52 52 H 1.08999 * 110.84119 * 278.08937 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2023 2.1146 -0.9132 6 6 3.4590 3.0223 -1.8589 7 6 4.0965 4.4130 -1.8378 8 7 3.3715 5.2980 -2.7593 9 6 3.8009 6.7034 -2.5922 10 6 2.5663 7.5900 -2.8394 11 1 2.3452 8.1862 -1.9541 12 6 2.7992 8.5002 -4.0470 13 6 1.4114 6.6030 -3.1262 14 1 1.2694 6.4769 -4.1996 15 7 0.1717 7.0568 -2.4911 16 6 -1.0204 6.6732 -2.9893 17 8 -1.0668 5.9526 -3.9637 18 6 -2.2956 7.1396 -2.3356 19 16 -3.7153 6.4611 -3.2301 20 6 -5.0315 7.1453 -2.2793 21 1 -4.8131 7.7755 -1.4297 22 6 -6.3489 6.8746 -2.6220 23 7 -7.3322 7.3862 -1.9120 24 14 -6.7267 5.7841 -4.0909 25 1 -6.8117 4.3692 -3.6482 26 1 -8.0216 6.1936 -4.6914 27 1 -5.6469 5.9227 -5.1010 28 6 1.9105 5.2877 -2.4770 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 4.0867 0.8885 0.7544 37 1 5.2754 2.0181 -0.9887 38 1 2.4168 3.0956 -1.5484 39 1 3.5096 2.6148 -2.8687 40 1 5.1387 4.3398 -2.1482 41 1 4.0459 4.8205 -0.8281 42 1 4.5802 6.9421 -3.3160 43 1 4.1738 6.8601 -1.5801 44 1 3.0077 7.8909 -4.9263 45 1 1.9084 9.1025 -4.2251 46 1 3.6475 9.1556 -3.8496 47 1 0.2089 7.6335 -1.7120 48 1 -2.3199 6.7971 -1.3011 49 1 -2.3386 8.2285 -2.3588 50 1 -8.2529 7.1967 -2.1513 51 1 1.7288 5.2961 -1.4023 52 1 1.4322 4.4246 -2.9400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:13 Heat of formation + Delta-G solvation = -56.613497 kcal Electronic energy + Delta-G solvation = -27244.397634 eV Core-core repulsion = 23561.733301 eV Total energy + Delta-G solvation = -3682.664333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22557 -39.79293 -37.97792 -35.91817 -34.68322 -34.54376 -33.37936 -31.39686 -30.35365 -28.89737 -27.84179 -27.33292 -25.97408 -24.20739 -22.54859 -21.98047 -21.73139 -21.27439 -19.84586 -19.22208 -17.99176 -17.74339 -17.11088 -17.01429 -16.56305 -16.41616 -16.07926 -15.67871 -15.40985 -15.29692 -14.92888 -14.87356 -14.64791 -14.49557 -14.31196 -14.15858 -13.77393 -13.58077 -13.40317 -13.35034 -13.26144 -13.03042 -12.96693 -12.66504 -12.50511 -12.42650 -12.23302 -12.15018 -11.88655 -11.87238 -11.83828 -11.63705 -11.57132 -11.17588 -11.17009 -11.00634 -10.53574 -10.14174 -9.83343 -9.41904 -8.99794 -8.52046 -6.22583 0.98199 1.30760 1.30926 1.46344 1.54205 1.54958 2.15553 2.24913 2.70175 2.86346 3.05589 3.43800 3.61627 3.80968 3.88592 3.90203 4.06154 4.09195 4.19375 4.22032 4.24340 4.24617 4.29595 4.33463 4.46056 4.51300 4.55726 4.60060 4.64303 4.69883 4.77519 4.82229 4.88950 4.91424 4.96978 5.01985 5.06832 5.07463 5.10290 5.17670 5.21668 5.29266 5.34003 5.41967 5.43451 5.70379 5.74691 5.87581 5.94522 6.07842 6.11091 6.44645 6.93382 7.18288 8.60408 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008303 B = 0.002874 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.533408 B = 9740.629409 C =12514.222653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.106 4.106 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.102 4.102 7 C 0.060 3.940 8 N -0.525 5.525 9 C 0.043 3.957 10 C -0.099 4.099 11 H 0.099 0.901 12 C -0.139 4.139 13 C 0.144 3.856 14 H 0.079 0.921 15 N -0.704 5.704 16 C 0.537 3.463 17 O -0.559 6.559 18 C -0.111 4.111 19 S -0.175 6.175 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.237 1.237 28 C 0.032 3.968 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.078 0.922 47 H 0.416 0.584 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.277 0.723 51 H 0.053 0.947 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.167 -5.718 4.293 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.143 4.143 4 C -0.178 4.178 5 C -0.178 4.178 6 C -0.139 4.139 7 C -0.068 4.068 8 N -0.250 5.250 9 C -0.085 4.085 10 C -0.119 4.119 11 H 0.117 0.883 12 C -0.197 4.197 13 C 0.038 3.962 14 H 0.098 0.902 15 N -0.358 5.358 16 C 0.323 3.677 17 O -0.437 6.437 18 C -0.262 4.262 19 S 0.052 5.948 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.161 1.161 28 C -0.097 4.097 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.254 0.746 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.086 0.914 51 H 0.071 0.929 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 29.036 -7.056 2.196 29.962 hybrid contribution -1.048 0.953 1.955 2.414 sum 27.988 -6.104 4.150 28.945 Atomic orbital electron populations 1.21823 0.96121 1.01998 1.01579 1.21415 0.95359 0.96024 1.02300 1.20921 0.93531 0.97586 1.02238 1.22924 0.95527 1.00399 0.98929 1.22807 1.00263 0.97957 0.96760 1.20882 0.99449 0.94127 0.99411 1.22227 0.98720 0.91956 0.93901 1.64812 1.02464 1.07373 1.50330 1.23006 0.97174 0.86517 1.01759 1.22253 0.92977 0.96010 1.00643 0.88266 1.21806 1.02217 0.99006 0.96656 1.21931 0.82892 0.93622 0.97717 0.90243 1.45725 1.03939 1.52423 1.33674 1.19977 0.85071 0.79451 0.83213 1.90700 1.87463 1.37731 1.27762 1.23267 0.93655 1.05539 1.03725 1.84739 0.98766 1.68292 1.43049 1.22460 0.92766 1.35685 1.16627 0.91917 1.25550 0.95019 0.96323 0.99058 1.70011 1.00173 1.44702 1.40670 0.85886 0.80034 0.79774 0.80809 1.18703 1.18352 1.16062 1.23484 0.89384 0.98007 0.98839 0.92009 0.92681 0.93746 0.92204 0.91067 0.91491 0.91773 0.86058 0.85798 0.91491 0.91387 0.89274 0.94187 0.88928 0.92024 0.92810 0.93132 0.90323 0.74620 0.86886 0.86747 0.91364 0.92910 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.11 -1.80 5.92 30.60 0.18 -1.62 16 3 C -0.11 -1.77 5.32 29.85 0.16 -1.62 16 4 C -0.16 -2.33 9.51 25.64 0.24 -2.08 16 5 C -0.16 -2.27 9.51 25.64 0.24 -2.02 16 6 C -0.10 -1.69 4.97 29.85 0.15 -1.55 16 7 C 0.06 0.89 5.01 86.30 0.43 1.32 16 8 N -0.53 -9.32 5.40 -882.28 -4.77 -14.08 16 9 C 0.04 0.58 6.35 86.45 0.55 1.12 16 10 C -0.10 -1.43 3.32 -9.91 -0.03 -1.46 16 11 H 0.10 1.10 7.75 -2.39 -0.02 1.08 16 12 C -0.14 -1.96 8.89 71.98 0.64 -1.32 16 13 C 0.14 3.14 2.98 46.20 0.14 3.27 16 14 H 0.08 2.22 7.26 -2.38 -0.02 2.21 16 15 N -0.70 -16.29 5.18 -436.83 -2.26 -18.55 16 16 C 0.54 18.18 7.85 87.66 0.69 18.87 16 17 O -0.56 -23.81 15.51 -3.02 -0.05 -23.86 16 18 C -0.11 -4.11 6.16 71.24 0.44 -3.67 16 19 S -0.17 -8.81 18.55 -56.49 -1.05 -9.86 16 20 C -0.53 -30.64 10.04 67.95 0.68 -29.96 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 22 C 0.05 2.69 5.50 84.86 0.47 3.16 16 23 N -0.92 -55.91 13.97 21.65 0.30 -55.61 16 24 Si 0.91 45.10 27.74 68.60 1.90 47.00 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.24 -11.69 6.74 99.48 0.67 -11.01 16 28 C 0.03 0.69 4.80 86.60 0.42 1.10 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.25 5.28 -2.39 -0.01 1.24 16 36 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.07 1.30 3.97 -2.39 -0.01 1.29 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.04 0.57 7.81 -2.39 -0.02 0.55 16 42 H 0.09 1.11 7.68 -2.38 -0.02 1.09 16 43 H 0.06 0.67 7.57 -2.39 -0.02 0.65 16 44 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 45 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.42 6.82 8.39 -92.70 -0.78 6.05 16 48 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 49 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 50 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 51 H 0.05 1.07 8.00 -2.39 -0.02 1.05 16 52 H 0.06 1.69 7.69 -2.39 -0.02 1.67 16 Total: -1.00 -71.55 423.03 0.25 -71.30 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.06 Total: 22.18 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 6.11 Total: -18.52 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -6.72 Total: -88.25 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -71.55 0.25 -71.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.683 kcal (2) G-P(sol) polarization free energy of solvation -71.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds