Wall clock time and date at job start Sat Apr 11 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 C 1.50694 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.31004 * 120.00046 * 124.99991 * 4 3 2 6 6 C 1.50702 * 120.00164 * 179.72776 * 5 4 3 7 7 C 1.52993 * 109.47193 * 125.00037 * 6 5 4 8 8 N 1.46905 * 109.46899 * 180.02562 * 7 6 5 9 9 C 1.47905 * 110.99900 * 170.00191 * 8 7 6 10 10 C 1.53998 * 107.05302 * 214.15396 * 9 8 7 11 11 H 1.09006 * 110.30840 * 120.24064 * 10 9 8 12 12 C 1.52999 * 110.30578 * 242.30282 * 10 9 8 13 13 C 1.54594 * 105.14046 * 1.22222 * 10 9 8 14 14 H 1.09003 * 110.72280 * 263.42120 * 13 10 9 15 15 N 1.46505 * 110.72304 * 140.31812 * 13 10 9 16 16 C 1.34769 * 120.00069 * 154.99862 * 15 13 10 17 17 O 1.21281 * 119.99959 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99937 * 180.02562 * 16 15 13 19 19 S 1.81005 * 109.47122 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99997 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99669 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00144 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99507 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47109 * 89.99844 * 24 22 20 26 26 H 1.48502 * 109.46530 * 209.99506 * 24 22 20 27 27 H 1.48491 * 109.47337 * 329.99565 * 24 22 20 28 28 C 1.48529 * 111.00432 * 52.60179 * 8 7 6 29 29 H 1.08997 * 109.47255 * 60.00079 * 1 2 3 30 30 H 1.09002 * 109.46606 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46950 * 299.99823 * 1 2 3 32 32 H 1.08998 * 109.46950 * 240.00177 * 2 1 3 33 33 H 1.08998 * 109.47234 * 119.99365 * 2 1 3 34 34 H 1.08999 * 109.47202 * 59.99798 * 3 2 1 35 35 H 1.08997 * 109.47165 * 299.99976 * 3 2 1 36 36 H 1.08000 * 120.00563 * 305.00048 * 4 3 2 37 37 H 1.08005 * 119.99846 * 0.02562 * 5 4 3 38 38 H 1.09003 * 109.46806 * 245.00403 * 6 5 4 39 39 H 1.08997 * 109.46799 * 4.99500 * 6 5 4 40 40 H 1.09007 * 109.47128 * 299.99304 * 7 6 5 41 41 H 1.08997 * 109.47686 * 60.00007 * 7 6 5 42 42 H 1.09004 * 109.91162 * 333.50270 * 9 8 7 43 43 H 1.08989 * 109.92222 * 94.60235 * 9 8 7 44 44 H 1.09005 * 109.46805 * 58.55241 * 12 10 9 45 45 H 1.08999 * 109.47154 * 178.54845 * 12 10 9 46 46 H 1.09000 * 109.47353 * 298.54932 * 12 10 9 47 47 H 0.97003 * 119.99466 * 335.00017 * 15 13 10 48 48 H 1.08999 * 109.47235 * 299.99599 * 18 16 15 49 49 H 1.09001 * 109.47682 * 60.00123 * 18 16 15 50 50 H 0.97001 * 120.00034 * 180.02562 * 23 22 20 51 51 H 1.09000 * 110.66301 * 278.15952 * 28 8 7 52 52 H 1.09005 * 110.66446 * 41.28436 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2024 2.0932 -0.9285 6 6 5.7094 2.0984 -0.9244 7 6 6.2248 1.6034 -2.2771 8 7 7.6938 1.6078 -2.2728 9 6 8.2295 0.9162 -3.4654 10 6 9.5296 0.2128 -3.0337 11 1 9.4494 -0.8624 -3.1943 12 6 10.7215 0.7772 -3.8095 13 6 9.6751 0.5230 -1.5262 14 1 10.3369 1.3749 -1.3698 15 7 10.1647 -0.6515 -0.8001 16 6 10.8273 -0.4967 0.3632 17 8 11.0187 0.6149 0.8087 18 6 11.3313 -1.7049 1.1097 19 16 12.1731 -1.1724 2.6210 20 6 12.6464 -2.7383 3.2756 21 1 12.3937 -3.6443 2.7447 22 6 13.3431 -2.8076 4.4741 23 7 13.6506 -1.7036 5.1214 24 14 13.8454 -4.4678 5.1677 25 1 15.1891 -4.8336 4.6520 26 1 13.8877 -4.3924 6.6502 27 1 12.8588 -5.4968 4.7523 28 6 8.2250 0.8651 -1.1014 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 4.0867 0.9063 0.7671 37 1 3.6626 2.6299 -1.6948 38 1 6.0687 3.1121 -0.7474 39 1 6.0727 1.4411 -0.1344 40 1 5.8655 0.5895 -2.4540 41 1 5.8615 2.2606 -3.0671 42 1 7.5095 0.1796 -3.8220 43 1 8.4394 1.6409 -4.2519 44 1 10.7962 1.8499 -3.6308 45 1 11.6367 0.2886 -3.4754 46 1 10.5806 0.5952 -4.8749 47 1 10.0118 -1.5406 -1.1568 48 1 10.4908 -2.3485 1.3691 49 1 12.0300 -2.2558 0.4800 50 1 14.1377 -1.7520 5.9588 51 1 8.2232 1.4963 -0.2127 52 1 7.6496 -0.0446 -0.9295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206090061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:17 Heat of formation + Delta-G solvation = -44.326851 kcal Electronic energy + Delta-G solvation = -26522.991160 eV Core-core repulsion = 22840.859615 eV Total energy + Delta-G solvation = -3682.131544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.12761 -38.52808 -36.97002 -35.19315 -33.68025 -32.60582 -32.42931 -30.13515 -29.71055 -27.84260 -26.66389 -25.49843 -24.92826 -23.08247 -21.67480 -20.80494 -20.67870 -20.15272 -19.78685 -17.81296 -16.73690 -16.43271 -15.91694 -15.62771 -15.16571 -14.90170 -14.81642 -14.74572 -14.56343 -14.07515 -13.86107 -13.72090 -13.67623 -13.39243 -13.23366 -12.85264 -12.72054 -12.54480 -12.41187 -12.24525 -12.10031 -12.02641 -11.61280 -11.53654 -11.33699 -11.31998 -11.08399 -11.06777 -11.03451 -11.02212 -10.84578 -10.80823 -10.74390 -9.81640 -9.40482 -9.22102 -9.07242 -8.89941 -8.64292 -8.23613 -6.49990 -6.21794 -3.92274 1.95847 2.99253 3.07436 3.22025 3.26912 3.30674 3.59671 3.91177 4.20174 4.28381 4.42992 4.48990 4.62695 4.64760 4.74213 4.76846 4.94943 4.98330 5.06028 5.10274 5.13224 5.14613 5.19349 5.22764 5.26961 5.30016 5.35647 5.42041 5.42523 5.54227 5.57937 5.62938 5.65297 5.71570 5.75006 5.78735 5.83594 5.86758 5.88151 5.90866 5.94457 5.99220 6.09673 6.13363 6.40818 6.50421 6.58191 6.76518 6.80111 7.59313 7.69896 8.34975 8.61150 9.23480 10.85581 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008533 B = 0.002170 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.433718 B =12898.276677 C =15387.818088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.094 4.094 7 C 0.055 3.945 8 N -0.515 5.515 9 C 0.042 3.958 10 C -0.109 4.109 11 H 0.079 0.921 12 C -0.141 4.141 13 C 0.148 3.852 14 H 0.106 0.894 15 N -0.732 5.732 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.024 3.976 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.397 0.603 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.268 0.732 51 H 0.090 0.910 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.836 4.117 -19.035 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.128 4.128 4 C -0.177 4.177 5 C -0.174 4.174 6 C -0.131 4.131 7 C -0.073 4.073 8 N -0.239 5.239 9 C -0.086 4.086 10 C -0.129 4.129 11 H 0.097 0.903 12 C -0.199 4.199 13 C 0.041 3.959 14 H 0.124 0.876 15 N -0.386 5.386 16 C 0.319 3.681 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.105 4.105 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.231 0.769 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.078 0.922 51 H 0.108 0.892 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.269 6.613 -18.117 27.978 hybrid contribution -0.326 -3.690 -0.257 3.713 sum -20.595 2.924 -18.374 27.754 Atomic orbital electron populations 1.21793 0.95844 1.01683 1.01762 1.21485 0.95641 0.96485 1.02294 1.20727 0.92739 0.97132 1.02232 1.22912 0.95714 0.99961 0.99124 1.22792 0.95511 1.00010 0.99132 1.20778 0.92342 1.02844 0.97180 1.22238 0.87298 0.99741 0.98061 1.64783 1.07593 1.49386 1.02142 1.22950 0.94961 0.96710 0.94002 1.22263 0.95609 1.00240 0.94763 0.90269 1.21817 0.97120 1.01626 0.99309 1.21859 0.94776 0.89834 0.89396 0.87600 1.46023 1.59460 1.08981 1.24102 1.20328 0.76674 0.90998 0.80086 1.90709 1.55462 1.26302 1.66278 1.23537 1.04143 0.98731 1.04034 1.85407 1.69694 1.11752 1.16388 1.22867 1.42470 0.92778 1.10292 0.90958 1.24993 0.95136 0.97702 0.95776 1.70014 1.37377 1.26953 1.15884 0.86170 0.78942 0.82293 0.78109 1.20271 1.20744 1.19722 1.23657 0.94897 0.97127 0.94821 0.92817 0.92713 0.92702 0.92006 0.91816 0.91146 0.91741 0.87335 0.87470 0.90009 0.91232 0.94705 0.90538 0.93688 0.89862 0.91855 0.92191 0.92497 0.76905 0.89299 0.89245 0.92178 0.89155 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.81 5.92 -26.72 -0.16 -0.97 16 3 C -0.09 -0.63 5.66 -27.88 -0.16 -0.79 16 4 C -0.16 -1.30 9.12 -36.03 -0.33 -1.63 16 5 C -0.16 -1.27 9.12 -36.03 -0.33 -1.59 16 6 C -0.09 -0.85 5.32 -27.89 -0.15 -1.00 16 7 C 0.05 0.48 5.01 -3.82 -0.02 0.46 16 8 N -0.51 -5.23 5.40 -230.46 -1.24 -6.47 16 9 C 0.04 0.36 6.35 -2.75 -0.02 0.34 16 10 C -0.11 -0.98 3.32 -89.26 -0.30 -1.28 16 11 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 12 C -0.14 -1.22 8.89 37.16 0.33 -0.89 16 13 C 0.15 1.79 2.98 -66.07 -0.20 1.60 16 14 H 0.11 1.56 7.26 -51.93 -0.38 1.18 16 15 N -0.73 -9.67 5.18 -52.01 -0.27 -9.94 16 16 C 0.53 9.82 7.85 -10.99 -0.09 9.73 16 17 O -0.51 -11.58 15.51 5.56 0.09 -11.49 16 18 C -0.15 -3.08 6.16 36.00 0.22 -2.85 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.02 0.28 4.78 -1.91 -0.01 0.27 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 36 H 0.11 0.95 7.84 -52.49 -0.41 0.54 16 37 H 0.11 0.77 7.84 -52.48 -0.41 0.35 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 40 H 0.03 0.31 7.81 -51.93 -0.41 -0.10 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.35 7.57 -51.93 -0.39 -0.04 16 43 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 44 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.40 4.10 8.39 -40.82 -0.34 3.76 16 48 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 49 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 50 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.09 1.23 7.66 -51.93 -0.40 0.83 16 52 H 0.05 0.55 8.00 -51.93 -0.42 0.13 16 LS Contribution 430.14 15.07 6.48 6.48 Total: -1.00 -33.08 430.14 -11.81 -44.89 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -9.74 Total: 1.44 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.63 Total: -12.07 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.78 Total: -41.83 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -33.08 -11.81 -44.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.565 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds