Wall clock time and date at job start Sat Apr 11 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 C 1.50694 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.31004 * 120.00046 * 124.99991 * 4 3 2 6 6 C 1.50702 * 120.00164 * 179.72776 * 5 4 3 7 7 C 1.52993 * 109.47193 * 125.00037 * 6 5 4 8 8 N 1.46905 * 109.46899 * 180.02562 * 7 6 5 9 9 C 1.47905 * 110.99900 * 170.00191 * 8 7 6 10 10 C 1.53998 * 107.05302 * 214.15396 * 9 8 7 11 11 H 1.09006 * 110.30840 * 120.24064 * 10 9 8 12 12 C 1.52999 * 110.30578 * 242.30282 * 10 9 8 13 13 C 1.54594 * 105.14046 * 1.22222 * 10 9 8 14 14 H 1.09003 * 110.72280 * 263.42120 * 13 10 9 15 15 N 1.46505 * 110.72304 * 140.31812 * 13 10 9 16 16 C 1.34769 * 120.00069 * 154.99862 * 15 13 10 17 17 O 1.21281 * 119.99959 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99937 * 180.02562 * 16 15 13 19 19 S 1.81005 * 109.47122 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99997 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99669 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00144 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99507 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47109 * 89.99844 * 24 22 20 26 26 H 1.48502 * 109.46530 * 209.99506 * 24 22 20 27 27 H 1.48491 * 109.47337 * 329.99565 * 24 22 20 28 28 C 1.48529 * 111.00432 * 52.60179 * 8 7 6 29 29 H 1.08997 * 109.47255 * 60.00079 * 1 2 3 30 30 H 1.09002 * 109.46606 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46950 * 299.99823 * 1 2 3 32 32 H 1.08998 * 109.46950 * 240.00177 * 2 1 3 33 33 H 1.08998 * 109.47234 * 119.99365 * 2 1 3 34 34 H 1.08999 * 109.47202 * 59.99798 * 3 2 1 35 35 H 1.08997 * 109.47165 * 299.99976 * 3 2 1 36 36 H 1.08000 * 120.00563 * 305.00048 * 4 3 2 37 37 H 1.08005 * 119.99846 * 0.02562 * 5 4 3 38 38 H 1.09003 * 109.46806 * 245.00403 * 6 5 4 39 39 H 1.08997 * 109.46799 * 4.99500 * 6 5 4 40 40 H 1.09007 * 109.47128 * 299.99304 * 7 6 5 41 41 H 1.08997 * 109.47686 * 60.00007 * 7 6 5 42 42 H 1.09004 * 109.91162 * 333.50270 * 9 8 7 43 43 H 1.08989 * 109.92222 * 94.60235 * 9 8 7 44 44 H 1.09005 * 109.46805 * 58.55241 * 12 10 9 45 45 H 1.08999 * 109.47154 * 178.54845 * 12 10 9 46 46 H 1.09000 * 109.47353 * 298.54932 * 12 10 9 47 47 H 0.97003 * 119.99466 * 335.00017 * 15 13 10 48 48 H 1.08999 * 109.47235 * 299.99599 * 18 16 15 49 49 H 1.09001 * 109.47682 * 60.00123 * 18 16 15 50 50 H 0.97001 * 120.00034 * 180.02562 * 23 22 20 51 51 H 1.09000 * 110.66301 * 278.15952 * 28 8 7 52 52 H 1.09005 * 110.66446 * 41.28436 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2024 2.0932 -0.9285 6 6 5.7094 2.0984 -0.9244 7 6 6.2248 1.6034 -2.2771 8 7 7.6938 1.6078 -2.2728 9 6 8.2295 0.9162 -3.4654 10 6 9.5296 0.2128 -3.0337 11 1 9.4494 -0.8624 -3.1943 12 6 10.7215 0.7772 -3.8095 13 6 9.6751 0.5230 -1.5262 14 1 10.3369 1.3749 -1.3698 15 7 10.1647 -0.6515 -0.8001 16 6 10.8273 -0.4967 0.3632 17 8 11.0187 0.6149 0.8087 18 6 11.3313 -1.7049 1.1097 19 16 12.1731 -1.1724 2.6210 20 6 12.6464 -2.7383 3.2756 21 1 12.3937 -3.6443 2.7447 22 6 13.3431 -2.8076 4.4741 23 7 13.6506 -1.7036 5.1214 24 14 13.8454 -4.4678 5.1677 25 1 15.1891 -4.8336 4.6520 26 1 13.8877 -4.3924 6.6502 27 1 12.8588 -5.4968 4.7523 28 6 8.2250 0.8651 -1.1014 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 4.0867 0.9063 0.7671 37 1 3.6626 2.6299 -1.6948 38 1 6.0687 3.1121 -0.7474 39 1 6.0727 1.4411 -0.1344 40 1 5.8655 0.5895 -2.4540 41 1 5.8615 2.2606 -3.0671 42 1 7.5095 0.1796 -3.8220 43 1 8.4394 1.6409 -4.2519 44 1 10.7962 1.8499 -3.6308 45 1 11.6367 0.2886 -3.4754 46 1 10.5806 0.5952 -4.8749 47 1 10.0118 -1.5406 -1.1568 48 1 10.4908 -2.3485 1.3691 49 1 12.0300 -2.2558 0.4800 50 1 14.1377 -1.7520 5.9588 51 1 8.2232 1.4963 -0.2127 52 1 7.6496 -0.0446 -0.9295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:16 Heat of formation + Delta-G solvation = -65.032571 kcal Electronic energy + Delta-G solvation = -26523.889027 eV Core-core repulsion = 22840.859615 eV Total energy + Delta-G solvation = -3683.029412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21160 -39.75633 -37.63493 -36.05354 -34.68270 -34.57995 -33.39150 -31.34531 -30.57272 -28.97512 -27.65171 -27.28402 -25.68266 -23.93994 -22.30477 -21.82771 -21.53262 -21.25818 -20.47368 -19.77326 -17.92885 -17.71731 -16.88507 -16.77323 -16.51335 -16.24144 -16.13125 -15.71329 -15.39268 -15.31584 -14.88780 -14.67092 -14.49302 -14.38772 -14.34044 -14.00448 -13.72970 -13.56750 -13.29935 -13.17041 -13.12855 -12.96448 -12.89630 -12.64530 -12.61794 -12.44404 -12.25977 -12.06425 -12.01383 -11.77085 -11.74803 -11.63784 -11.61579 -11.45689 -11.14751 -10.96371 -10.27871 -10.12463 -9.86992 -9.42641 -8.67150 -8.34986 -6.13097 1.25868 1.30712 1.42038 1.46204 1.56607 1.58657 2.19159 2.27283 2.99067 3.03589 3.31343 3.45580 3.61771 3.79249 3.91079 3.97746 4.07124 4.10845 4.18885 4.22001 4.25860 4.27931 4.33079 4.37578 4.45835 4.49519 4.52703 4.62071 4.64957 4.72777 4.81395 4.82096 4.89078 4.91105 4.96289 4.99927 5.06800 5.07768 5.10541 5.13667 5.23477 5.29392 5.34433 5.41413 5.43731 5.44933 5.76008 5.87467 5.92257 6.06714 6.19406 6.48288 7.06197 7.23250 8.74168 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008533 B = 0.002170 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.433718 B =12898.276677 C =15387.818088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.092 4.092 7 C 0.059 3.941 8 N -0.526 5.526 9 C 0.044 3.956 10 C -0.099 4.099 11 H 0.100 0.900 12 C -0.139 4.139 13 C 0.143 3.857 14 H 0.076 0.924 15 N -0.705 5.705 16 C 0.536 3.464 17 O -0.563 6.563 18 C -0.129 4.129 19 S -0.151 6.151 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.258 1.258 28 C 0.032 3.968 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.416 0.584 48 H 0.109 0.891 49 H 0.111 0.889 50 H 0.271 0.729 51 H 0.061 0.939 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.279 2.031 -21.459 30.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.125 4.125 4 C -0.184 4.184 5 C -0.174 4.174 6 C -0.129 4.129 7 C -0.069 4.069 8 N -0.251 5.251 9 C -0.084 4.084 10 C -0.118 4.118 11 H 0.118 0.882 12 C -0.197 4.197 13 C 0.037 3.963 14 H 0.094 0.906 15 N -0.358 5.358 16 C 0.322 3.678 17 O -0.441 6.441 18 C -0.280 4.280 19 S 0.076 5.924 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.182 1.182 28 C -0.097 4.097 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.254 0.746 48 H 0.127 0.873 49 H 0.129 0.871 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.744 4.502 -20.600 30.289 hybrid contribution 0.059 -2.978 0.394 3.005 sum -21.685 1.524 -20.205 29.679 Atomic orbital electron populations 1.21785 0.95032 1.02014 1.02134 1.21477 0.96351 0.96190 1.01868 1.20722 0.91661 0.97430 1.02720 1.22998 0.96603 0.99914 0.98838 1.22823 0.94815 1.00154 0.99561 1.20720 0.93192 1.01842 0.97152 1.22250 0.86312 1.00334 0.97982 1.64766 1.08614 1.49596 1.02085 1.23015 0.94748 0.97284 0.93335 1.22249 0.96194 1.01651 0.91707 0.88164 1.21807 0.96424 1.00814 1.00640 1.21930 0.94288 0.88353 0.91716 0.90565 1.45734 1.57360 1.10595 1.22154 1.20091 0.76957 0.89631 0.81142 1.90702 1.57728 1.27781 1.67845 1.23370 1.04429 0.99599 1.00638 1.85607 1.71456 1.13884 1.21455 1.23203 1.42545 0.92857 1.10779 0.89881 1.26141 0.94890 1.02138 0.96086 1.70183 1.38347 1.29761 1.16447 0.84948 0.78947 0.76861 0.77194 1.19287 1.20329 1.18171 1.23437 0.94693 0.96874 0.94703 0.92240 0.92429 0.92543 0.92198 0.92498 0.91002 0.90847 0.88504 0.85950 0.91020 0.92939 0.94117 0.89089 0.91907 0.88824 0.92903 0.93214 0.90155 0.74647 0.87258 0.87111 0.92005 0.92052 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.99 0.71 -0.84 16 2 C -0.12 -1.50 5.92 30.60 0.18 -1.32 16 3 C -0.09 -1.13 5.66 29.85 0.17 -0.96 16 4 C -0.17 -2.64 9.12 25.64 0.23 -2.41 16 5 C -0.16 -2.38 9.12 25.64 0.23 -2.15 16 6 C -0.09 -1.64 5.32 29.85 0.16 -1.48 16 7 C 0.06 0.93 5.01 86.30 0.43 1.37 16 8 N -0.53 -10.02 5.40 -883.03 -4.76 -14.79 16 9 C 0.04 0.63 6.35 86.45 0.55 1.17 16 10 C -0.10 -1.53 3.32 -9.91 -0.03 -1.57 16 11 H 0.10 1.19 7.75 -2.38 -0.02 1.18 16 12 C -0.14 -2.12 8.89 71.98 0.64 -1.48 16 13 C 0.14 3.40 2.98 46.19 0.14 3.54 16 14 H 0.08 2.33 7.26 -2.39 -0.02 2.31 16 15 N -0.70 -17.82 5.18 -436.86 -2.26 -20.08 16 16 C 0.54 19.83 7.85 87.66 0.69 20.51 16 17 O -0.56 -26.45 15.51 -3.03 -0.05 -26.50 16 18 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 19 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 20 C -0.55 -31.23 9.50 67.96 0.65 -30.58 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 24 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 28 C 0.03 0.75 4.78 86.65 0.41 1.16 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.81 7.79 -2.39 -0.02 0.80 16 36 H 0.10 1.75 7.84 -2.91 -0.02 1.73 16 37 H 0.12 1.51 7.84 -2.91 -0.02 1.49 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.11 6.44 -2.39 -0.02 1.09 16 40 H 0.04 0.61 7.81 -2.38 -0.02 0.59 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 0.72 7.57 -2.38 -0.02 0.70 16 43 H 0.09 1.19 7.69 -2.39 -0.02 1.17 16 44 H 0.05 0.92 8.13 -2.38 -0.02 0.90 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.42 7.45 8.39 -92.71 -0.78 6.67 16 48 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 49 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 50 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 51 H 0.06 1.78 7.66 -2.39 -0.02 1.76 16 52 H 0.05 1.17 8.00 -2.38 -0.02 1.15 16 Total: -1.00 -74.88 430.14 0.24 -74.64 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.09 Total: 25.11 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 6.07 Total: -18.53 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -6.74 Total: -90.81 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -74.88 0.24 -74.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.608 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds