Wall clock time and date at job start Sat Apr 11 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46793 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47237 * 60.00639 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46927 * 120.63303 * 359.72079 * 13 11 10 15 15 C 1.53191 * 108.77356 * 233.58945 * 14 13 11 16 16 C 1.53040 * 109.31454 * 305.36260 * 15 14 13 17 17 C 1.53039 * 109.53579 * 61.36967 * 16 15 14 18 18 H 1.09003 * 109.50044 * 58.61656 * 17 16 15 19 19 N 1.46898 * 109.49823 * 178.68243 * 17 16 15 20 20 C 1.46904 * 111.00150 * 204.99755 * 19 17 16 21 21 C 1.53001 * 109.46869 * 179.97438 * 20 19 17 22 22 C 1.53002 * 109.47174 * 295.00049 * 21 20 19 23 23 C 1.52996 * 109.46767 * 180.02562 * 22 21 20 24 24 C 1.53007 * 109.47446 * 60.00234 * 23 22 21 25 25 C 1.52996 * 109.46650 * 299.99762 * 24 23 22 26 26 C 1.53001 * 109.47410 * 60.00264 * 25 24 23 27 27 C 1.46925 * 120.62614 * 179.44850 * 13 11 10 28 28 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 1.08996 * 109.58591 * 353.37927 * 14 13 11 32 32 H 1.08997 * 109.58192 * 113.65624 * 14 13 11 33 33 H 1.08993 * 109.49844 * 65.32135 * 15 14 13 34 34 H 1.09007 * 109.49301 * 185.41492 * 15 14 13 35 35 H 1.08996 * 109.45698 * 181.38881 * 16 15 14 36 36 H 1.09000 * 109.45797 * 301.35151 * 16 15 14 37 37 H 1.00902 * 110.99806 * 81.04840 * 19 17 16 38 38 H 1.08995 * 109.47386 * 300.00110 * 20 19 17 39 39 H 1.09002 * 109.46833 * 60.00125 * 20 19 17 40 40 H 1.08991 * 109.47178 * 55.00647 * 21 20 19 41 41 H 1.09004 * 109.46961 * 300.00103 * 22 21 20 42 42 H 1.08994 * 109.47032 * 60.00283 * 22 21 20 43 43 H 1.08994 * 109.47591 * 300.00094 * 23 22 21 44 44 H 1.08999 * 109.47041 * 179.97438 * 23 22 21 45 45 H 1.08994 * 109.46919 * 179.97438 * 24 23 22 46 46 H 1.09004 * 109.46868 * 59.99563 * 24 23 22 47 47 H 1.08991 * 109.47617 * 299.99715 * 25 24 23 48 48 H 1.09007 * 109.46857 * 179.97438 * 25 24 23 49 49 H 1.08999 * 109.47449 * 179.97438 * 26 25 24 50 50 H 1.09004 * 109.47483 * 59.99357 * 26 25 24 51 51 H 1.09005 * 109.58329 * 246.19991 * 27 13 11 52 52 H 1.09000 * 109.58776 * 6.62153 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 4.2960 -6.1173 0.0015 15 6 4.9152 -6.8977 -1.1623 16 6 4.5081 -8.3693 -1.0584 17 6 2.9853 -8.4870 -1.1540 18 1 2.6460 -8.0620 -2.0987 19 7 2.5977 -9.9023 -1.0858 20 6 1.3019 -10.1255 -1.7410 21 6 0.9332 -11.6076 -1.6503 22 6 1.9403 -12.4338 -2.4529 23 6 1.5711 -13.9158 -2.3626 24 6 0.1675 -14.1275 -2.9338 25 6 -0.8395 -13.3013 -2.1312 26 6 -0.4704 -11.8192 -2.2214 27 6 2.3442 -7.7246 0.0156 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 4.5003 -5.0538 -0.1220 32 1 4.7206 -6.4639 0.9436 33 1 4.5578 -6.4871 -2.1066 34 1 6.0013 -6.8166 -1.1177 35 1 4.9675 -8.9313 -1.8714 36 1 4.8443 -8.7724 -0.1031 37 1 2.5804 -10.2268 -0.1305 38 1 0.5363 -9.5292 -1.2448 39 1 1.3692 -9.8316 -2.7885 40 1 0.9529 -11.9237 -0.6074 41 1 1.9205 -12.1176 -3.4959 42 1 2.9402 -12.2826 -2.0463 43 1 1.5905 -14.2323 -1.3198 44 1 2.2883 -14.5043 -2.9347 45 1 -0.0952 -15.1834 -2.8698 46 1 0.1481 -13.8110 -3.9767 47 1 -0.8201 -13.6177 -1.0884 48 1 -1.8394 -13.4518 -2.5383 49 1 -1.1881 -11.2306 -1.6500 50 1 -0.4898 -11.5027 -3.2643 51 1 2.6132 -8.2019 0.9579 52 1 1.2601 -7.7219 -0.0986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207429514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:21 Heat of formation + Delta-G solvation = -89.341978 kcal Electronic energy + Delta-G solvation = -27439.309295 eV Core-core repulsion = 23755.225749 eV Total energy + Delta-G solvation = -3684.083547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28991 -39.80820 -38.68315 -36.35822 -34.60406 -33.69675 -32.54148 -31.59581 -31.21575 -29.28046 -27.71090 -26.13128 -25.70657 -23.57893 -23.25509 -22.16726 -21.72112 -20.62810 -20.34113 -19.49647 -18.23033 -17.31800 -16.90427 -16.81179 -16.39988 -16.14852 -15.85397 -15.73326 -15.48662 -15.25570 -14.93178 -14.79887 -14.73000 -14.46143 -14.32147 -14.27107 -13.74472 -13.51039 -13.23380 -13.17653 -13.01225 -12.92764 -12.85755 -12.78839 -12.59537 -12.34068 -11.97132 -11.90013 -11.87641 -11.79054 -11.70235 -11.60414 -11.29432 -11.17538 -10.97702 -10.89632 -10.82318 -10.28366 -9.93888 -9.27457 -8.70114 -8.36434 -6.15314 1.23179 1.40633 1.44189 1.51652 1.56211 2.04648 2.25461 2.97838 3.09017 3.22901 3.60925 3.72065 3.80047 3.89191 3.92420 3.98447 4.03870 4.06518 4.21520 4.23025 4.25468 4.39693 4.41415 4.47324 4.50888 4.58810 4.60573 4.67197 4.69188 4.76244 4.77498 4.79200 4.83687 4.89094 4.96356 5.06378 5.10957 5.21720 5.28672 5.29140 5.30758 5.35332 5.38320 5.40309 5.45698 5.47452 5.57107 5.64087 5.99394 6.18206 6.24057 6.42476 7.04724 7.08916 8.73133 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.001979 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.274736 B =14143.170461 C =15163.697800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.604 5.604 14 C 0.097 3.903 15 C -0.129 4.129 16 C -0.096 4.096 17 C 0.084 3.916 18 H 0.059 0.941 19 N -0.665 5.665 20 C 0.062 3.938 21 C -0.075 4.075 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.117 4.117 27 C 0.087 3.913 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.348 0.652 38 H 0.016 0.984 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.085 0.915 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -27.945 -3.292 30.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.338 5.338 14 C -0.025 4.025 15 C -0.168 4.168 16 C -0.134 4.134 17 C -0.027 4.027 18 H 0.077 0.923 19 N -0.295 5.295 20 C -0.067 4.067 21 C -0.094 4.094 22 C -0.137 4.137 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.038 4.038 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.167 0.833 38 H 0.034 0.966 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.103 0.897 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.894 -28.361 -3.853 30.283 hybrid contribution 0.369 1.911 0.598 2.036 sum 10.263 -26.449 -3.255 28.557 Atomic orbital electron populations 1.70197 1.08025 1.28570 1.48045 1.26161 0.95990 1.03399 0.93704 0.84881 0.78662 0.76173 0.78079 1.17857 1.19948 1.19902 1.23225 0.95353 0.91799 1.58827 0.89802 1.85612 1.10710 0.99412 1.97027 1.23358 1.03354 0.94209 1.06361 1.20207 0.85999 0.86837 0.75155 1.90668 1.17397 1.85831 1.51003 1.48069 1.07648 1.04998 1.73066 1.22119 0.77382 1.02206 1.00777 1.21923 1.02217 0.95202 0.97443 1.21432 0.92549 0.95721 1.03735 1.21945 0.97110 0.87363 0.96296 0.92277 1.60707 1.30056 1.15854 1.22869 1.22045 0.89295 0.96442 0.98932 1.21077 0.94877 0.93173 1.00259 1.21408 0.98869 0.94059 0.99325 1.21550 0.96513 0.96361 1.01205 1.21548 0.95036 0.99806 0.99344 1.21499 0.98895 0.94340 1.00652 1.21570 0.96055 0.97002 1.00911 1.22534 0.99491 0.81374 1.00365 0.91990 0.87349 0.87484 0.89408 0.88905 0.92660 0.87521 0.90254 0.90238 0.83315 0.96557 0.91972 0.91012 0.93181 0.91004 0.91947 0.91705 0.91533 0.92440 0.91875 0.91884 0.92758 0.92414 0.89738 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.27 9.50 67.95 0.65 -30.62 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 10 C -0.12 -4.98 4.50 71.24 0.32 -4.66 16 11 C 0.53 20.74 7.72 87.66 0.68 21.41 16 12 O -0.57 -27.71 15.27 -3.04 -0.05 -27.76 16 13 N -0.60 -16.67 2.97 -818.06 -2.43 -19.09 16 14 C 0.10 1.82 6.34 86.36 0.55 2.37 16 15 C -0.13 -1.89 6.08 30.67 0.19 -1.71 16 16 C -0.10 -1.34 5.49 30.62 0.17 -1.18 16 17 C 0.08 1.58 2.63 45.14 0.12 1.70 16 18 H 0.06 1.40 7.80 -2.39 -0.02 1.39 16 19 N -0.66 -10.49 5.71 -490.41 -2.80 -13.29 16 20 C 0.06 1.12 4.87 86.30 0.42 1.54 16 21 C -0.08 -1.10 2.33 -10.79 -0.03 -1.12 16 22 C -0.10 -1.34 5.09 30.59 0.16 -1.18 16 23 C -0.12 -1.37 5.92 30.60 0.18 -1.19 16 24 C -0.12 -1.40 5.92 30.60 0.18 -1.22 16 25 C -0.12 -1.49 5.92 30.59 0.18 -1.30 16 26 C -0.12 -1.78 5.20 30.60 0.16 -1.62 16 27 C 0.09 2.07 5.71 86.51 0.49 2.56 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.11 3.99 7.94 -2.39 -0.02 3.97 16 30 H 0.11 3.97 7.69 -2.40 -0.02 3.95 16 31 H 0.09 1.73 5.94 -2.39 -0.01 1.71 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.35 4.67 8.42 -89.69 -0.75 3.92 16 38 H 0.02 0.35 7.58 -2.39 -0.02 0.33 16 39 H 0.06 1.25 8.06 -2.39 -0.02 1.23 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 1.01 7.75 -2.39 -0.02 0.99 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 51 H 0.08 1.65 8.06 -2.38 -0.02 1.63 16 52 H 0.06 1.79 6.50 -2.39 -0.02 1.77 16 Total: -1.00 -74.82 411.32 0.88 -73.94 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.12 Total: 21.64 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.88 Total: -15.06 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -4.94 Total: -88.52 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -74.82 0.88 -73.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207429514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.403 kcal (2) G-P(sol) polarization free energy of solvation -74.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds