Wall clock time and date at job start Sat Apr 11 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00083 * 2 1 4 4 H 1.48505 * 109.47267 * 269.99971 * 3 2 1 5 5 H 1.48504 * 109.47218 * 29.99841 * 3 2 1 6 6 H 1.48501 * 109.47291 * 149.99951 * 3 2 1 7 7 C 1.38803 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99846 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00056 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47297 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99568 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00339 * 180.02562 * 11 10 9 14 14 C 1.46929 * 120.62869 * 359.97438 * 13 11 10 15 15 C 1.53191 * 108.77608 * 233.61236 * 14 13 11 16 16 C 1.53039 * 109.31134 * 305.36437 * 15 14 13 17 17 C 1.53040 * 109.53686 * 61.36605 * 16 15 14 18 18 H 1.09000 * 109.50167 * 58.62028 * 17 16 15 19 19 N 1.46905 * 109.49673 * 178.68309 * 17 16 15 20 20 C 1.46901 * 110.99870 * 204.93632 * 19 17 16 21 21 C 1.53004 * 109.46916 * 180.02562 * 20 19 17 22 22 C 1.52996 * 109.46700 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.46897 * 179.97438 * 22 21 20 24 24 C 1.53780 * 113.61835 * 272.50098 * 23 22 21 25 25 C 1.53785 * 87.08217 * 220.02024 * 24 23 22 26 26 C 1.53774 * 87.08081 * 25.42807 * 25 24 23 27 27 C 1.46928 * 120.60491 * 180.02562 * 13 11 10 28 28 H 0.97000 * 119.99928 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47230 * 60.00044 * 10 9 7 30 30 H 1.08999 * 109.47071 * 299.99995 * 10 9 7 31 31 H 1.09004 * 109.58558 * 113.82409 * 14 13 11 32 32 H 1.09007 * 109.58285 * 353.39912 * 14 13 11 33 33 H 1.08998 * 109.49522 * 185.41254 * 15 14 13 34 34 H 1.09001 * 109.52233 * 65.33393 * 15 14 13 35 35 H 1.09002 * 109.46152 * 301.34280 * 16 15 14 36 36 H 1.08999 * 109.45932 * 181.38328 * 16 15 14 37 37 H 1.00901 * 110.99869 * 80.98343 * 19 17 16 38 38 H 1.09004 * 109.47031 * 299.99620 * 20 19 17 39 39 H 1.08995 * 109.47111 * 59.99900 * 20 19 17 40 40 H 1.08995 * 109.46615 * 299.99641 * 21 20 19 41 41 H 1.08996 * 109.46939 * 60.00272 * 21 20 19 42 42 H 1.08993 * 109.47740 * 299.99810 * 22 21 20 43 43 H 1.09005 * 109.47573 * 59.99976 * 22 21 20 44 44 H 1.09004 * 112.84864 * 43.80415 * 23 22 21 45 45 H 1.09008 * 113.61371 * 334.56366 * 24 23 22 46 46 H 1.09000 * 113.61599 * 105.46606 * 24 23 22 47 47 H 1.09003 * 113.61002 * 270.88119 * 25 24 23 48 48 H 1.08996 * 113.69418 * 139.99462 * 25 24 23 49 49 H 1.08996 * 113.61609 * 220.02031 * 26 25 24 50 50 H 1.09006 * 113.69219 * 89.13165 * 26 25 24 51 51 H 1.08997 * 109.61742 * 6.61625 * 27 13 11 52 52 H 1.09008 * 109.55955 * 246.18817 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7910 -5.5022 0.0009 13 7 2.8440 -6.3432 0.0033 14 6 4.2959 -6.1174 0.0048 15 6 4.9166 -6.8925 -1.1617 16 6 4.5094 -8.3645 -1.0650 17 6 2.9866 -8.4817 -1.1631 18 1 2.6487 -8.0525 -2.1063 19 7 2.5989 -9.8974 -1.1018 20 6 1.3034 -10.1173 -1.7585 21 6 0.9339 -11.5996 -1.6740 22 6 -0.4157 -11.8284 -2.3574 23 6 -0.7850 -13.3108 -2.2734 24 6 -0.2230 -14.1523 -3.4314 25 6 -1.5682 -14.8975 -3.4387 26 6 -2.1846 -13.6293 -2.8252 27 6 2.3433 -7.7245 0.0023 28 1 -0.4850 0.8400 -0.0004 29 1 3.1237 -3.7310 0.8925 30 1 3.1251 -3.7317 -0.8874 31 1 4.7196 -6.4706 0.9449 32 1 4.5002 -5.0532 -0.1136 33 1 6.0026 -6.8116 -1.1152 34 1 4.5610 -6.4777 -2.1049 35 1 4.8443 -8.7720 -0.1111 36 1 4.9698 -8.9229 -1.8800 37 1 2.5814 -10.2265 -0.1481 38 1 0.5376 -9.5233 -1.2595 39 1 1.3709 -9.8183 -2.8045 40 1 1.6995 -12.1938 -2.1726 41 1 0.8662 -11.8980 -0.6278 42 1 -1.1811 -11.2342 -1.8584 43 1 -0.3486 -11.5298 -3.4036 44 1 -0.5959 -13.7390 -1.2890 45 1 -0.0373 -13.5776 -4.3388 46 1 0.6219 -14.7790 -3.1458 47 1 -1.5927 -15.7607 -2.7735 48 1 -1.9384 -15.1233 -4.4387 49 1 -2.9233 -13.8338 -2.0503 50 1 -2.5359 -12.9107 -3.5658 51 1 1.2600 -7.7209 -0.1180 52 1 2.6071 -8.2089 0.9425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207430648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:32 Heat of formation + Delta-G solvation = -58.982207 kcal Electronic energy + Delta-G solvation = -26773.323909 eV Core-core repulsion = 23090.556861 eV Total energy + Delta-G solvation = -3682.767048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29245 -39.88418 -38.97495 -36.91212 -34.60226 -34.37484 -33.05143 -31.56324 -29.86725 -27.72661 -27.24411 -26.43464 -26.14102 -24.09029 -23.09380 -22.33631 -21.60878 -20.43302 -20.19752 -19.49829 -18.23327 -17.39627 -16.89771 -16.78913 -16.65581 -16.25649 -16.14342 -15.91862 -15.52732 -15.42798 -15.23520 -14.67453 -14.58076 -14.42827 -14.32952 -13.85807 -13.78545 -13.48446 -13.35335 -13.30057 -13.18041 -12.90020 -12.80792 -12.61661 -12.53370 -12.32624 -12.11624 -11.91014 -11.89285 -11.71837 -11.63857 -11.59426 -11.36698 -11.15516 -10.98897 -10.95021 -10.80963 -10.28571 -9.95959 -9.31471 -8.69871 -8.35892 -6.14938 1.23202 1.42052 1.44338 1.51389 1.55598 2.04144 2.26011 2.98363 3.06578 3.22931 3.60434 3.71381 3.74573 3.80090 3.84582 3.94318 4.00286 4.02857 4.05513 4.12885 4.22668 4.23607 4.26077 4.40221 4.44620 4.52267 4.61972 4.67313 4.70887 4.75820 4.78657 4.82283 4.89201 4.89595 4.94306 4.94508 5.03484 5.10081 5.10337 5.12117 5.27243 5.30569 5.34826 5.40319 5.41864 5.46798 5.49432 5.66984 5.98060 6.18279 6.23602 6.40822 7.05126 7.08498 8.73427 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.001831 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.391017 B =15286.744095 C =16649.879263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.604 5.604 14 C 0.097 3.903 15 C -0.129 4.129 16 C -0.097 4.097 17 C 0.082 3.918 18 H 0.059 0.941 19 N -0.671 5.671 20 C 0.056 3.944 21 C -0.102 4.102 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.145 4.145 27 C 0.087 3.913 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.348 0.652 38 H 0.016 0.984 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.059 0.941 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 -28.260 -3.818 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.338 5.338 14 C -0.025 4.025 15 C -0.168 4.168 16 C -0.135 4.135 17 C -0.029 4.029 18 H 0.078 0.922 19 N -0.301 5.301 20 C -0.074 4.074 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.127 4.127 24 C -0.174 4.174 25 C -0.180 4.180 26 C -0.182 4.182 27 C -0.037 4.037 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.168 0.832 38 H 0.035 0.965 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.077 0.923 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.292 -28.671 -4.375 30.165 hybrid contribution 0.411 1.857 0.616 1.999 sum 8.702 -26.814 -3.759 28.440 Atomic orbital electron populations 1.70188 1.08035 1.28631 1.47959 1.26149 0.95968 1.03366 0.93659 0.84935 0.78229 0.75875 0.78822 1.19283 1.20313 1.18039 1.23196 0.95360 0.91822 1.58984 0.89801 1.85608 1.10680 0.99384 1.97037 1.23360 1.03382 0.94178 1.06391 1.20213 0.85995 0.86839 0.75140 1.90666 1.17399 1.85830 1.50985 1.48068 1.07670 1.04954 1.73095 1.22130 0.77351 1.02257 1.00764 1.21927 1.02261 0.95137 0.97483 1.21444 0.92518 0.95824 1.03752 1.21868 0.97185 0.87386 0.96444 0.92242 1.60734 1.30296 1.15900 1.23159 1.22042 0.89154 0.97221 0.98941 1.21431 0.97093 0.94286 1.01221 1.21511 0.96586 0.95867 1.00640 1.22550 0.96422 0.94758 0.99005 1.22974 0.97272 0.98652 0.98472 1.22825 0.96766 0.97050 1.01356 1.22987 0.96582 0.98174 1.00470 1.22423 0.99505 0.81458 1.00351 0.91989 0.87325 0.87446 0.88869 0.89309 0.87461 0.92619 0.90221 0.90275 0.83243 0.96541 0.91890 0.90837 0.91598 0.92773 0.92136 0.89048 0.90355 0.91207 0.89741 0.91367 0.91600 0.90505 0.92284 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.55 -31.34 9.50 67.96 0.65 -30.69 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 10 C -0.12 -4.99 4.50 71.24 0.32 -4.67 16 11 C 0.53 20.76 7.72 87.66 0.68 21.44 16 12 O -0.57 -27.72 15.27 -3.02 -0.05 -27.76 16 13 N -0.60 -16.74 2.97 -818.95 -2.43 -19.18 16 14 C 0.10 1.83 6.34 86.36 0.55 2.38 16 15 C -0.13 -1.92 6.08 30.67 0.19 -1.73 16 16 C -0.10 -1.39 5.49 30.62 0.17 -1.23 16 17 C 0.08 1.59 2.61 44.98 0.12 1.70 16 18 H 0.06 1.43 7.80 -2.39 -0.02 1.41 16 19 N -0.67 -11.03 6.25 -491.22 -3.07 -14.10 16 20 C 0.06 1.00 5.48 86.30 0.47 1.48 16 21 C -0.10 -1.44 5.47 30.59 0.17 -1.28 16 22 C -0.11 -1.56 5.05 30.59 0.15 -1.41 16 23 C -0.11 -1.38 3.65 -10.27 -0.04 -1.42 16 24 C -0.14 -1.59 7.63 31.12 0.24 -1.35 16 25 C -0.14 -1.58 8.08 31.12 0.25 -1.33 16 26 C -0.14 -1.84 7.64 31.12 0.24 -1.60 16 27 C 0.09 2.09 5.69 86.35 0.49 2.59 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 30 H 0.11 3.98 7.69 -2.40 -0.02 3.96 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.74 5.93 -2.38 -0.01 1.73 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.35 4.82 8.41 -89.69 -0.75 4.06 16 38 H 0.02 0.35 7.56 -2.39 -0.02 0.34 16 39 H 0.06 1.24 8.06 -2.39 -0.02 1.22 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.91 7.84 -2.38 -0.02 0.90 16 44 H 0.09 1.10 8.13 -2.38 -0.02 1.08 16 45 H 0.08 0.94 7.90 -2.38 -0.02 0.93 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 1.03 8.10 -2.38 -0.02 1.01 16 51 H 0.06 1.82 6.48 -2.39 -0.02 1.80 16 52 H 0.08 1.67 8.04 -2.38 -0.02 1.65 16 Total: -1.00 -75.11 419.31 0.82 -74.29 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.12 Total: 23.01 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 5.10 Total: -15.89 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -5.22 Total: -89.36 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -75.11 0.82 -74.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207430648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.305 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds