Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46793 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47237 * 60.00639 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46921 * 120.63392 * 359.43977 * 13 11 10 15 15 C 1.52760 * 109.00994 * 233.58899 * 14 13 11 16 16 C 1.53036 * 109.38235 * 305.58739 * 15 14 13 17 17 C 1.53035 * 109.53955 * 61.24292 * 16 15 14 18 18 H 1.08997 * 109.49664 * 58.58032 * 17 16 15 19 19 N 1.46896 * 109.50138 * 178.68141 * 17 16 15 20 20 C 1.46900 * 111.00331 * 204.83814 * 19 17 16 21 21 C 1.52997 * 109.47185 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.47051 * 179.97438 * 21 20 19 23 23 C 1.54265 * 110.03171 * 292.90597 * 22 21 20 24 24 C 1.54971 * 104.15873 * 217.13673 * 23 22 21 25 25 C 1.54889 * 102.77762 * 37.88658 * 24 23 22 26 26 C 1.53876 * 110.03167 * 175.68858 * 22 21 20 27 27 C 1.46924 * 120.62813 * 179.72946 * 13 11 10 28 28 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 1.09004 * 109.58490 * 353.42409 * 14 13 11 32 32 H 1.09002 * 109.58518 * 113.84767 * 14 13 11 33 33 H 1.09005 * 109.56000 * 185.55371 * 15 14 13 34 34 H 1.08994 * 109.38732 * 65.51586 * 15 14 13 35 35 H 1.09002 * 109.46377 * 301.22063 * 16 15 14 36 36 H 1.09001 * 109.45993 * 181.26248 * 16 15 14 37 37 H 1.00901 * 111.00300 * 328.79404 * 19 17 16 38 38 H 1.09002 * 109.47143 * 299.99974 * 20 19 17 39 39 H 1.08993 * 109.47050 * 59.99749 * 20 19 17 40 40 H 1.09002 * 109.46917 * 299.99939 * 21 20 19 41 41 H 1.09002 * 109.47324 * 59.99844 * 21 20 19 42 42 H 1.09003 * 110.01711 * 54.29776 * 22 21 20 43 43 H 1.08992 * 110.48982 * 335.78241 * 23 22 21 44 44 H 1.08995 * 110.48442 * 98.42845 * 23 22 21 45 45 H 1.09001 * 110.71683 * 279.57858 * 24 23 22 46 46 H 1.08995 * 110.92201 * 156.29598 * 24 23 22 47 47 H 1.09000 * 110.48940 * 203.40664 * 25 24 23 48 48 H 1.09002 * 110.59875 * 80.81697 * 25 24 23 49 49 H 1.09000 * 110.03140 * 238.56890 * 26 22 21 50 50 H 1.09001 * 110.03545 * 359.97438 * 26 22 21 51 51 H 1.09006 * 109.58353 * 246.15683 * 27 13 11 52 52 H 1.09008 * 109.58903 * 6.57099 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 4.2960 -6.1174 -0.0047 15 6 4.9147 -6.8971 -1.1636 16 6 4.5076 -8.3687 -1.0602 17 6 2.9848 -8.4864 -1.1552 18 1 2.6451 -8.0603 -2.0992 19 7 2.5972 -9.9017 -1.0876 20 6 1.2994 -10.1239 -1.7391 21 6 0.9301 -11.6058 -1.6480 22 6 -0.4218 -11.8371 -2.3260 23 6 -1.5411 -11.1416 -1.5238 24 6 -2.7429 -12.1144 -1.6283 25 6 -2.0665 -13.5051 -1.5408 26 6 -0.7558 -13.3391 -2.3371 27 6 2.3442 -7.7246 0.0094 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 4.4997 -5.0541 -0.1315 32 1 4.7246 -6.4641 0.9355 33 1 6.0008 -6.8160 -1.1193 34 1 4.5574 -6.4862 -2.1077 35 1 4.8442 -8.7724 -0.1053 36 1 4.9667 -8.9304 -1.8738 37 1 3.3098 -10.4915 -1.4907 38 1 0.5354 -9.5281 -1.2396 39 1 1.3634 -9.8286 -2.7863 40 1 1.6940 -12.2019 -2.1472 41 1 0.8660 -11.9006 -0.6005 42 1 -0.3987 -11.4521 -3.3455 43 1 -1.2425 -11.0149 -0.4833 44 1 -1.7887 -10.1788 -1.9706 45 1 -3.2551 -11.9934 -2.5828 46 1 -3.4349 -11.9685 -0.7989 47 1 -2.6979 -14.2660 -1.9996 48 1 -1.8526 -13.7629 -0.5035 49 1 -0.8956 -13.6829 -3.3620 50 1 0.0455 -13.9034 -1.8600 51 1 2.6104 -8.2051 0.9509 52 1 1.2604 -7.7216 -0.1080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207430753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -85.470248 kcal Electronic energy + Delta-G solvation = -27254.851420 eV Core-core repulsion = 23570.935764 eV Total energy + Delta-G solvation = -3683.915656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25998 -39.60079 -38.78509 -36.60133 -34.59820 -33.88041 -32.66293 -31.44343 -29.72418 -29.49350 -27.71937 -26.82925 -26.23704 -23.78646 -22.69246 -21.94089 -21.44211 -20.47188 -20.29270 -19.49942 -18.23263 -17.27495 -16.93042 -16.88047 -16.69733 -16.35667 -16.18028 -15.71816 -15.67589 -15.40518 -15.21376 -14.84321 -14.52890 -14.32463 -14.21092 -14.13402 -13.79172 -13.52240 -13.45855 -13.17367 -12.92490 -12.88520 -12.85979 -12.59831 -12.25254 -12.03480 -11.95919 -11.94967 -11.89455 -11.70671 -11.62645 -11.53464 -11.48749 -11.28234 -11.17022 -11.16524 -10.90494 -10.27377 -9.80284 -9.43582 -8.69460 -8.35759 -6.14614 1.23667 1.40989 1.44537 1.53355 1.56607 2.05020 2.25990 2.98394 3.07682 3.23539 3.59162 3.68005 3.74325 3.84973 3.87393 3.87791 4.01233 4.09265 4.19155 4.22858 4.28051 4.31463 4.41228 4.48666 4.53287 4.56396 4.60994 4.64445 4.70987 4.74250 4.79072 4.81931 4.84241 4.92561 4.94998 5.01717 5.04519 5.09406 5.11492 5.16957 5.20804 5.25439 5.35540 5.39076 5.40869 5.48275 5.50006 5.57200 5.98159 6.18916 6.27535 6.48205 7.05272 7.10931 8.73841 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.002117 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.376829 B =13224.305427 C =14876.409308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.121 4.121 11 C 0.530 3.470 12 O -0.569 6.569 13 N -0.606 5.606 14 C 0.095 3.905 15 C -0.128 4.128 16 C -0.112 4.112 17 C 0.082 3.918 18 H 0.028 0.972 19 N -0.679 5.679 20 C 0.059 3.941 21 C -0.097 4.097 22 C -0.091 4.091 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.117 4.117 27 C 0.126 3.874 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.356 0.644 38 H 0.051 0.949 39 H 0.024 0.976 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.082 0.918 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.471 -27.723 -4.535 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.691 4.691 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.272 4.272 11 C 0.318 3.682 12 O -0.448 6.448 13 N -0.341 5.341 14 C -0.026 4.026 15 C -0.167 4.167 16 C -0.150 4.150 17 C -0.029 4.029 18 H 0.046 0.954 19 N -0.312 5.312 20 C -0.070 4.070 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.154 4.154 27 C 0.003 3.997 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.176 0.824 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.315 -27.901 -3.905 29.374 hybrid contribution 1.217 1.638 -0.924 2.240 sum 9.532 -26.263 -4.829 28.353 Atomic orbital electron populations 1.70200 1.08033 1.28562 1.48060 1.26169 0.95997 1.03418 0.93731 0.84877 0.78666 0.76155 0.78067 1.17830 1.19948 1.19920 1.23224 0.95356 0.91776 1.58789 0.89778 1.85631 1.10726 0.99411 1.97023 1.23355 1.03345 0.94131 1.06384 1.20204 0.85993 0.86799 0.75176 1.90670 1.17400 1.85837 1.50909 1.48103 1.07672 1.05203 1.73089 1.22032 0.77527 1.02247 1.00828 1.21831 1.02427 0.94815 0.97590 1.21679 0.92201 0.96856 1.04229 1.21705 0.96773 0.88699 0.95679 0.95442 1.60265 1.05082 1.04933 1.60912 1.22023 0.91362 0.97830 0.95809 1.21583 0.96384 0.94120 1.01361 1.21752 0.94253 0.96013 0.98962 1.22489 0.95669 0.98099 1.00063 1.22533 0.97148 0.95244 1.01675 1.22359 0.96497 0.96753 1.00516 1.22191 0.97700 0.94899 1.00651 1.21493 0.98724 0.79863 0.99632 0.91997 0.87312 0.87438 0.89256 0.88955 0.87169 0.92622 0.89559 0.89703 0.82407 0.93062 0.95737 0.90662 0.91369 0.91557 0.92107 0.93125 0.91572 0.91761 0.91019 0.91627 0.91408 0.90919 0.89997 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.65 13.22 21.65 0.29 -56.37 16 2 C 0.01 0.66 5.49 84.86 0.47 1.12 16 3 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 4 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.35 9.50 67.95 0.65 -30.70 16 8 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.16 -8.84 20.57 -56.49 -1.16 -10.00 16 10 C -0.12 -5.01 4.50 71.24 0.32 -4.69 16 11 C 0.53 21.25 7.72 87.66 0.68 21.93 16 12 O -0.57 -28.29 15.27 -3.04 -0.05 -28.34 16 13 N -0.61 -17.54 2.98 -819.72 -2.44 -19.99 16 14 C 0.10 1.85 6.31 86.22 0.54 2.40 16 15 C -0.13 -1.83 6.06 30.53 0.19 -1.65 16 16 C -0.11 -1.47 5.17 30.62 0.16 -1.31 16 17 C 0.08 1.63 2.64 44.99 0.12 1.75 16 18 H 0.03 0.67 7.80 -2.39 -0.02 0.65 16 19 N -0.68 -11.32 6.31 -491.20 -3.10 -14.42 16 20 C 0.06 1.09 5.33 86.30 0.46 1.55 16 21 C -0.10 -1.38 4.60 30.59 0.14 -1.24 16 22 C -0.09 -1.35 2.93 -10.07 -0.03 -1.38 16 23 C -0.13 -2.27 5.50 31.70 0.17 -2.09 16 24 C -0.13 -1.99 6.91 31.91 0.22 -1.77 16 25 C -0.12 -1.58 6.83 31.67 0.22 -1.37 16 26 C -0.12 -1.43 6.46 31.32 0.20 -1.22 16 27 C 0.13 3.35 5.90 86.36 0.51 3.86 16 28 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.11 4.05 7.95 -2.39 -0.02 4.03 16 30 H 0.11 4.01 7.68 -2.40 -0.02 3.99 16 31 H 0.09 1.78 5.94 -2.38 -0.01 1.77 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 37 H 0.36 4.26 8.34 -89.69 -0.75 3.51 16 38 H 0.05 1.23 6.90 -2.39 -0.02 1.21 16 39 H 0.02 0.47 8.06 -2.39 -0.02 0.45 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 1.06 8.02 -2.39 -0.02 1.04 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.19 7.77 -2.39 -0.02 1.17 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 51 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 52 H 0.05 1.87 6.48 -2.38 -0.02 1.85 16 Total: -1.00 -76.42 413.77 0.70 -75.71 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.13 Total: 22.40 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.01 Total: -14.83 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -5.25 Total: -90.77 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -76.42 0.70 -75.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207430753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.759 kcal (2) G-P(sol) polarization free energy of solvation -76.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds