Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00377 * 2 1 4 4 C 1.34783 * 119.99959 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99407 * 359.97438 * 4 2 1 6 6 C 1.50701 * 120.00225 * 180.02562 * 4 2 1 7 7 C 1.50696 * 109.46916 * 179.97438 * 6 4 2 8 8 O 1.21279 * 120.00579 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99457 * 179.97438 * 7 6 4 10 10 C 1.46924 * 120.63392 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77377 * 233.60790 * 10 9 7 12 12 C 1.53045 * 109.31293 * 305.36377 * 11 10 9 13 13 C 1.53040 * 109.53586 * 61.36283 * 12 11 10 14 14 H 1.09008 * 109.49839 * 58.62059 * 13 12 11 15 15 N 1.46901 * 109.49323 * 178.68312 * 13 12 11 16 16 C 1.46905 * 110.99870 * 204.93589 * 15 13 12 17 17 C 1.50697 * 109.47066 * 180.02562 * 16 15 13 18 18 O 1.21297 * 120.00124 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00196 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00290 * 180.02562 * 19 17 16 21 21 H 1.07990 * 119.99768 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99812 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99864 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99403 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47078 * 60.00286 * 24 22 20 26 26 H 1.48505 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47705 * 299.99905 * 24 22 20 28 28 C 1.46936 * 120.59960 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47423 * 270.00109 * 1 2 3 30 30 H 1.09004 * 109.47301 * 29.99853 * 1 2 3 31 31 H 1.09004 * 109.47312 * 149.99275 * 1 2 3 32 32 H 1.08996 * 109.47182 * 270.00240 * 3 2 1 33 33 H 1.09003 * 109.46563 * 30.00295 * 3 2 1 34 34 H 1.09001 * 109.47347 * 150.00047 * 3 2 1 35 35 H 1.08997 * 109.46737 * 59.99590 * 6 4 2 36 36 H 1.09002 * 109.46652 * 300.00103 * 6 4 2 37 37 H 1.08998 * 109.59099 * 113.82100 * 10 9 7 38 38 H 1.08999 * 109.70189 * 353.45883 * 10 9 7 39 39 H 1.08994 * 109.49740 * 185.40740 * 11 10 9 40 40 H 1.09001 * 109.52160 * 65.32805 * 11 10 9 41 41 H 1.08992 * 109.45513 * 301.34420 * 12 11 10 42 42 H 1.08995 * 109.44362 * 181.37579 * 12 11 10 43 43 H 1.00901 * 111.00067 * 328.88764 * 15 13 12 44 44 H 1.09001 * 109.46798 * 300.00327 * 16 15 13 45 45 H 1.08998 * 109.46961 * 60.00043 * 16 15 13 46 46 H 0.97009 * 119.99629 * 359.97438 * 19 17 16 47 47 H 0.97004 * 119.99642 * 179.97438 * 23 22 20 48 48 H 1.08991 * 109.61830 * 6.62398 * 28 9 7 49 49 H 1.08995 * 109.56168 * 246.19285 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5323 -2.2175 -0.0005 6 6 3.6458 -1.1673 0.0001 7 6 4.1480 -2.5881 -0.0001 8 8 3.3600 -3.5100 -0.0001 9 7 5.4732 -2.8344 -0.0001 10 6 6.4402 -1.7283 0.0005 11 6 7.4126 -1.9229 -1.1672 12 6 8.0470 -3.3124 -1.0713 13 6 6.9557 -4.3810 -1.1683 14 1 6.4197 -4.2692 -2.1109 15 7 7.5687 -5.7146 -1.1079 16 6 6.7168 -6.7158 -1.7637 17 6 7.3765 -8.0681 -1.6814 18 8 8.4505 -8.1865 -1.1302 19 7 6.7732 -9.1462 -2.2202 20 6 7.3732 -10.3766 -2.1449 21 1 8.3293 -10.4820 -1.6541 22 6 6.7514 -11.4879 -2.7009 23 7 5.5881 -11.3596 -3.2985 24 14 7.5692 -13.1642 -2.5988 25 1 7.7605 -13.5357 -1.1738 26 1 6.7089 -14.1759 -3.2634 27 1 8.8884 -13.1137 -3.2786 28 6 5.9774 -4.2145 -0.0008 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5140 32 1 2.3792 1.5834 -1.0276 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0088 -0.6541 0.8905 36 1 4.0095 -0.6529 -0.8895 37 1 6.9929 -1.7266 0.9399 38 1 5.9145 -0.7806 -0.1159 39 1 8.1926 -1.1630 -1.1215 40 1 6.8725 -1.8338 -2.1097 41 1 8.5665 -3.4094 -0.1181 42 1 8.7575 -3.4439 -1.8873 43 1 8.4933 -5.7062 -1.5118 44 1 5.7490 -6.7529 -1.2636 45 1 6.5751 -6.4432 -2.8095 46 1 5.9141 -9.0515 -2.6607 47 1 5.1542 -12.1353 -3.6870 48 1 5.1452 -4.9082 -0.1196 49 1 6.4920 -4.4155 0.9388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210009850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -90.261712 kcal Electronic energy + Delta-G solvation = -29731.825237 eV Core-core repulsion = 25501.408593 eV Total energy + Delta-G solvation = -4230.416644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80728 -39.59751 -38.29805 -37.49288 -35.77347 -35.06276 -33.80296 -32.48662 -31.61398 -31.16331 -29.73505 -28.23092 -26.57731 -26.06507 -25.26698 -24.10475 -22.31343 -21.22109 -19.90154 -19.15013 -18.83178 -17.99868 -17.81637 -16.67393 -16.55853 -16.36959 -16.02622 -15.68785 -15.33969 -15.11649 -14.81317 -14.44436 -14.31812 -14.13983 -13.78319 -13.67823 -13.53469 -13.43851 -13.16014 -13.06766 -12.98142 -12.75987 -12.70708 -12.40931 -12.23775 -12.14554 -11.84275 -11.52817 -11.37420 -11.23611 -11.13250 -10.96890 -10.51303 -10.39894 -10.20667 -10.15722 -9.54466 -9.44769 -9.05729 -8.80335 -8.39456 -8.05491 -7.90632 -6.35821 -3.76851 2.32617 2.40377 2.58203 2.94469 3.24276 3.29631 3.34103 3.96182 4.02959 4.08890 4.20464 4.30265 4.50992 4.59241 4.61803 4.66821 4.73849 4.78039 4.84146 4.95080 4.96063 5.10746 5.12819 5.20111 5.21210 5.27117 5.31274 5.40507 5.47974 5.54040 5.63216 5.76429 5.83366 5.87685 6.02038 6.04065 6.07877 6.14636 6.30192 6.38565 6.91848 7.21641 7.27270 7.60240 7.67333 7.89458 8.11496 8.15364 8.66884 9.22999 9.60188 10.11472 10.81823 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.002102 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.951742 B =13314.497854 C =14832.990649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.630 5.630 3 C 0.077 3.923 4 C 0.510 3.490 5 O -0.487 6.487 6 C -0.161 4.161 7 C 0.511 3.489 8 O -0.491 6.491 9 N -0.615 5.615 10 C 0.106 3.894 11 C -0.132 4.132 12 C -0.122 4.122 13 C 0.075 3.925 14 H 0.045 0.955 15 N -0.662 5.662 16 C 0.049 3.951 17 C 0.442 3.558 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.901 5.901 24 Si 0.932 3.068 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.123 3.877 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.353 0.647 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.393 0.607 47 H 0.272 0.728 48 H 0.093 0.907 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 32.388 4.502 32.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.367 5.367 3 C -0.066 4.066 4 C 0.295 3.705 5 O -0.358 6.358 6 C -0.204 4.204 7 C 0.297 3.703 8 O -0.362 6.362 9 N -0.352 5.352 10 C -0.017 4.017 11 C -0.171 4.171 12 C -0.160 4.160 13 C -0.036 4.036 14 H 0.063 0.937 15 N -0.295 5.295 16 C -0.083 4.083 17 C 0.227 3.773 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C 0.001 3.999 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.173 0.827 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.111 0.889 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.548 30.883 5.402 31.680 hybrid contribution 0.057 -0.275 -1.258 1.289 sum -4.492 30.608 4.143 31.212 Atomic orbital electron populations 1.21614 0.78915 1.03176 1.01863 1.47776 1.07181 1.06123 1.75662 1.21821 0.97324 0.85520 1.01960 1.20079 0.89283 0.83579 0.77547 1.90892 1.69227 1.30041 1.45606 1.21655 0.94782 0.97877 1.06097 1.19929 0.82075 0.90561 0.77780 1.90889 1.53786 1.45295 1.46253 1.48116 1.05025 1.07593 1.74432 1.21759 0.91242 0.89453 0.99293 1.21904 0.98793 0.97723 0.98674 1.21708 0.97557 0.93425 1.03328 1.21819 0.95166 0.89193 0.97419 0.93671 1.59946 1.05724 1.02739 1.61097 1.21755 0.97476 0.92099 0.96996 1.19774 0.87516 0.85390 0.84613 1.90513 1.22898 1.85665 1.47836 1.41867 1.21122 1.06768 1.50197 1.19650 1.05139 0.83517 1.34645 0.87966 1.25279 0.95983 1.00059 0.96701 1.69614 1.15385 1.31800 1.37411 0.85907 0.78711 0.80899 0.78615 1.19873 1.21003 1.19963 1.21605 0.97966 0.81555 0.98800 0.92780 0.91299 0.90392 0.92432 0.90870 0.90981 0.86253 0.86271 0.90930 0.90069 0.90331 0.91473 0.90507 0.91433 0.82662 0.89468 0.93833 0.77403 0.91815 0.88879 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.44 59.84 0.62 1.21 16 2 N -0.63 -4.66 3.27 -189.51 -0.62 -5.28 16 3 C 0.08 0.22 10.24 59.85 0.61 0.83 16 4 C 0.51 5.62 7.67 -10.98 -0.08 5.54 16 5 O -0.49 -8.20 13.76 -18.96 -0.26 -8.46 16 6 C -0.16 -1.23 3.08 -29.04 -0.09 -1.32 16 7 C 0.51 6.46 7.69 -10.99 -0.08 6.37 16 8 O -0.49 -9.05 13.59 -18.96 -0.26 -9.31 16 9 N -0.62 -6.55 2.97 -172.75 -0.51 -7.07 16 10 C 0.11 0.65 6.34 -3.71 -0.02 0.63 16 11 C -0.13 -0.85 6.08 -26.61 -0.16 -1.01 16 12 C -0.12 -1.14 5.17 -26.69 -0.14 -1.28 16 13 C 0.08 0.96 2.64 -67.58 -0.18 0.78 16 14 H 0.05 0.61 7.80 -51.92 -0.41 0.20 16 15 N -0.66 -10.85 5.93 -107.84 -0.64 -11.49 16 16 C 0.05 0.93 5.97 -4.97 -0.03 0.90 16 17 C 0.44 10.84 7.82 -10.99 -0.09 10.75 16 18 O -0.58 -16.22 15.78 5.54 0.09 -16.13 16 19 N -0.56 -14.90 5.29 -10.96 -0.06 -14.96 16 20 C -0.30 -8.63 9.68 -14.93 -0.14 -8.78 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -25.40 13.05 55.50 0.72 -24.68 16 24 Si 0.93 21.67 29.55 -169.99 -5.02 16.64 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.12 1.65 5.90 -3.69 -0.02 1.63 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.08 0.70 7.42 -51.93 -0.39 0.31 16 32 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.07 0.11 8.07 -51.93 -0.42 -0.31 16 34 H 0.07 0.09 6.44 -51.93 -0.33 -0.25 16 35 H 0.12 0.51 7.20 -51.93 -0.37 0.14 16 36 H 0.12 0.54 7.66 -51.93 -0.40 0.14 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.26 5.95 -51.93 -0.31 -0.05 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.35 5.81 8.04 -39.29 -0.32 5.50 16 44 H 0.09 1.62 7.56 -51.93 -0.39 1.22 16 45 H 0.04 0.75 8.06 -51.93 -0.42 0.34 16 46 H 0.39 10.05 7.90 -40.82 -0.32 9.73 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 48 H 0.09 1.53 6.48 -51.93 -0.34 1.19 16 49 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -39.37 395.95 -8.22 -47.58 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -7.72 Total: 10.43 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 0.10 Total: 16.75 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -1.11 Total: -63.47 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.43 Total: -33.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.37 -8.22 -47.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210009850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.681 kcal (2) G-P(sol) polarization free energy of solvation -39.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds