Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00377 * 2 1 4 4 C 1.34783 * 119.99959 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99407 * 359.97438 * 4 2 1 6 6 C 1.50701 * 120.00225 * 180.02562 * 4 2 1 7 7 C 1.50696 * 109.46916 * 179.97438 * 6 4 2 8 8 O 1.21279 * 120.00579 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99457 * 179.97438 * 7 6 4 10 10 C 1.46924 * 120.63392 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77377 * 233.60790 * 10 9 7 12 12 C 1.53045 * 109.31293 * 305.36377 * 11 10 9 13 13 C 1.53040 * 109.53586 * 61.36283 * 12 11 10 14 14 H 1.09008 * 109.49839 * 58.62059 * 13 12 11 15 15 N 1.46901 * 109.49323 * 178.68312 * 13 12 11 16 16 C 1.46905 * 110.99870 * 204.93589 * 15 13 12 17 17 C 1.50697 * 109.47066 * 180.02562 * 16 15 13 18 18 O 1.21297 * 120.00124 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00196 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00290 * 180.02562 * 19 17 16 21 21 H 1.07990 * 119.99768 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99812 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99864 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99403 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47078 * 60.00286 * 24 22 20 26 26 H 1.48505 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47705 * 299.99905 * 24 22 20 28 28 C 1.46936 * 120.59960 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47423 * 270.00109 * 1 2 3 30 30 H 1.09004 * 109.47301 * 29.99853 * 1 2 3 31 31 H 1.09004 * 109.47312 * 149.99275 * 1 2 3 32 32 H 1.08996 * 109.47182 * 270.00240 * 3 2 1 33 33 H 1.09003 * 109.46563 * 30.00295 * 3 2 1 34 34 H 1.09001 * 109.47347 * 150.00047 * 3 2 1 35 35 H 1.08997 * 109.46737 * 59.99590 * 6 4 2 36 36 H 1.09002 * 109.46652 * 300.00103 * 6 4 2 37 37 H 1.08998 * 109.59099 * 113.82100 * 10 9 7 38 38 H 1.08999 * 109.70189 * 353.45883 * 10 9 7 39 39 H 1.08994 * 109.49740 * 185.40740 * 11 10 9 40 40 H 1.09001 * 109.52160 * 65.32805 * 11 10 9 41 41 H 1.08992 * 109.45513 * 301.34420 * 12 11 10 42 42 H 1.08995 * 109.44362 * 181.37579 * 12 11 10 43 43 H 1.00901 * 111.00067 * 328.88764 * 15 13 12 44 44 H 1.09001 * 109.46798 * 300.00327 * 16 15 13 45 45 H 1.08998 * 109.46961 * 60.00043 * 16 15 13 46 46 H 0.97009 * 119.99629 * 359.97438 * 19 17 16 47 47 H 0.97004 * 119.99642 * 179.97438 * 23 22 20 48 48 H 1.08991 * 109.61830 * 6.62398 * 28 9 7 49 49 H 1.08995 * 109.56168 * 246.19285 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5323 -2.2175 -0.0005 6 6 3.6458 -1.1673 0.0001 7 6 4.1480 -2.5881 -0.0001 8 8 3.3600 -3.5100 -0.0001 9 7 5.4732 -2.8344 -0.0001 10 6 6.4402 -1.7283 0.0005 11 6 7.4126 -1.9229 -1.1672 12 6 8.0470 -3.3124 -1.0713 13 6 6.9557 -4.3810 -1.1683 14 1 6.4197 -4.2692 -2.1109 15 7 7.5687 -5.7146 -1.1079 16 6 6.7168 -6.7158 -1.7637 17 6 7.3765 -8.0681 -1.6814 18 8 8.4505 -8.1865 -1.1302 19 7 6.7732 -9.1462 -2.2202 20 6 7.3732 -10.3766 -2.1449 21 1 8.3293 -10.4820 -1.6541 22 6 6.7514 -11.4879 -2.7009 23 7 5.5881 -11.3596 -3.2985 24 14 7.5692 -13.1642 -2.5988 25 1 7.7605 -13.5357 -1.1738 26 1 6.7089 -14.1759 -3.2634 27 1 8.8884 -13.1137 -3.2786 28 6 5.9774 -4.2145 -0.0008 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5140 32 1 2.3792 1.5834 -1.0276 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0088 -0.6541 0.8905 36 1 4.0095 -0.6529 -0.8895 37 1 6.9929 -1.7266 0.9399 38 1 5.9145 -0.7806 -0.1159 39 1 8.1926 -1.1630 -1.1215 40 1 6.8725 -1.8338 -2.1097 41 1 8.5665 -3.4094 -0.1181 42 1 8.7575 -3.4439 -1.8873 43 1 8.4933 -5.7062 -1.5118 44 1 5.7490 -6.7529 -1.2636 45 1 6.5751 -6.4432 -2.8095 46 1 5.9141 -9.0515 -2.6607 47 1 5.1542 -12.1353 -3.6870 48 1 5.1452 -4.9082 -0.1196 49 1 6.4920 -4.4155 0.9388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210009850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -121.861937 kcal Electronic energy + Delta-G solvation = -29733.195525 eV Core-core repulsion = 25501.408593 eV Total energy + Delta-G solvation = -4231.786932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64563 -40.50761 -40.05766 -38.60120 -36.55389 -36.29897 -35.77364 -33.46163 -33.21534 -32.35325 -30.76715 -28.71130 -27.95216 -26.95573 -26.01061 -25.81805 -23.20249 -22.12620 -21.12779 -20.62715 -19.93525 -19.56814 -18.75248 -17.91351 -17.34189 -17.22776 -17.08454 -16.87746 -16.58887 -16.23578 -16.05517 -15.94699 -15.56285 -15.33573 -15.12804 -14.73965 -14.41213 -14.25238 -14.13491 -13.88841 -13.78270 -13.57406 -13.50152 -13.42357 -13.35319 -13.18539 -12.92226 -12.90724 -12.81374 -12.47322 -12.44576 -12.14204 -11.91099 -11.87328 -11.53111 -11.44816 -11.00195 -10.51628 -10.39926 -10.06301 -9.72908 -9.62818 -9.38494 -8.49150 -5.99175 1.38060 1.39405 1.51561 1.58626 1.69172 1.72668 1.99285 2.24765 2.29431 2.87888 3.17118 3.35399 3.44569 3.61079 3.84665 3.92464 4.06483 4.16626 4.21178 4.24169 4.28610 4.30625 4.37039 4.44061 4.45587 4.48370 4.53015 4.60589 4.72120 4.81758 4.85946 4.89833 4.93011 5.00785 5.03428 5.12844 5.16573 5.35580 5.38168 5.50329 5.55853 5.86138 6.04436 6.33348 6.36835 6.47197 6.54893 7.07769 7.16463 7.33090 7.50594 8.04728 8.68222 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.002102 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.951742 B =13314.497854 C =14832.990649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.624 5.624 3 C 0.066 3.934 4 C 0.496 3.504 5 O -0.563 6.563 6 C -0.146 4.146 7 C 0.500 3.500 8 O -0.564 6.564 9 N -0.609 5.609 10 C 0.097 3.903 11 C -0.125 4.125 12 C -0.119 4.119 13 C 0.081 3.919 14 H 0.039 0.961 15 N -0.672 5.672 16 C 0.066 3.934 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.574 5.574 20 C -0.336 4.336 21 H 0.083 0.917 22 C -0.017 4.017 23 N -0.923 5.923 24 Si 0.999 3.001 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.268 1.268 28 C 0.127 3.873 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.353 0.647 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.394 0.606 47 H 0.278 0.722 48 H 0.050 0.950 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 36.301 4.369 36.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.359 5.359 3 C -0.075 4.075 4 C 0.283 3.717 5 O -0.441 6.441 6 C -0.187 4.187 7 C 0.287 3.713 8 O -0.441 6.441 9 N -0.344 5.344 10 C -0.024 4.024 11 C -0.164 4.164 12 C -0.157 4.157 13 C -0.030 4.030 14 H 0.057 0.943 15 N -0.305 5.305 16 C -0.067 4.067 17 C 0.227 3.773 18 O -0.505 6.505 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.101 0.899 22 C -0.217 4.217 23 N -0.563 5.563 24 Si 0.821 3.179 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.193 1.193 28 C 0.002 3.998 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.183 0.817 36 H 0.180 0.820 37 H 0.105 0.895 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.173 0.827 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.228 0.772 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.093 34.923 5.263 35.453 hybrid contribution -0.394 -1.375 -1.185 1.857 sum -3.487 33.549 4.078 33.975 Atomic orbital electron populations 1.21680 0.79195 1.03150 1.02022 1.47946 1.07474 1.06911 1.73594 1.22211 0.98224 0.83368 1.03701 1.20783 0.90825 0.83462 0.76597 1.90873 1.70824 1.32938 1.49418 1.21716 0.92225 0.94728 1.10062 1.20906 0.81944 0.92129 0.76272 1.90871 1.55746 1.47878 1.49571 1.48225 1.05493 1.07437 1.73222 1.22220 0.90811 0.89355 1.00017 1.21917 0.99539 0.96200 0.98702 1.21728 0.96392 0.94035 1.03541 1.21869 0.96150 0.88335 0.96627 0.94289 1.59912 1.05551 1.04214 1.60873 1.21533 0.97075 0.89635 0.98446 1.20701 0.86965 0.86813 0.82809 1.90475 1.24486 1.86584 1.48921 1.41969 1.21295 1.06937 1.50853 1.19683 1.05266 0.85183 1.36371 0.89936 1.26163 0.96440 1.03423 0.95629 1.69693 1.16183 1.33113 1.37338 0.84912 0.78047 0.76201 0.78697 1.19652 1.19508 1.19284 1.21325 0.96456 0.83171 0.98812 0.92599 0.88000 0.93646 0.90787 0.89245 0.88469 0.81743 0.81967 0.89520 0.85616 0.86885 0.91476 0.90498 0.90990 0.82660 0.89529 0.91926 0.77211 0.91254 0.93117 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.44 127.77 1.33 2.40 16 2 N -0.62 -7.96 3.27 -871.88 -2.85 -10.81 16 3 C 0.07 0.06 10.24 127.77 1.31 1.37 16 4 C 0.50 10.61 7.67 87.66 0.67 11.28 16 5 O -0.56 -20.39 13.76 20.41 0.28 -20.11 16 6 C -0.15 -1.75 3.08 29.10 0.09 -1.66 16 7 C 0.50 12.39 7.69 87.66 0.67 13.07 16 8 O -0.56 -22.37 13.59 20.42 0.28 -22.09 16 9 N -0.61 -12.10 2.97 -818.85 -2.43 -14.53 16 10 C 0.10 0.75 6.34 86.36 0.55 1.30 16 11 C -0.13 -1.04 6.08 30.67 0.19 -0.85 16 12 C -0.12 -1.94 5.17 30.62 0.16 -1.78 16 13 C 0.08 2.04 2.64 45.00 0.12 2.16 16 14 H 0.04 1.05 7.80 -2.38 -0.02 1.03 16 15 N -0.67 -22.48 5.93 -495.11 -2.94 -25.41 16 16 C 0.07 2.56 5.97 85.55 0.51 3.07 16 17 C 0.44 22.41 7.82 87.66 0.69 23.10 16 18 O -0.62 -35.51 15.78 -3.08 -0.05 -35.56 16 19 N -0.57 -31.57 5.29 -306.99 -1.62 -33.19 16 20 C -0.34 -19.96 9.68 84.04 0.81 -19.14 16 21 H 0.08 5.14 7.16 -2.92 -0.02 5.12 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 23 N -0.92 -52.56 13.05 21.66 0.28 -52.28 16 24 Si 1.00 44.63 29.55 68.60 2.03 46.66 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 C 0.13 3.49 5.90 86.37 0.51 4.00 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.60 8.07 -2.38 -0.02 0.58 16 31 H 0.04 0.89 7.42 -2.39 -0.02 0.88 16 32 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.09 -0.15 8.07 -2.39 -0.02 -0.16 16 34 H 0.10 -0.37 6.44 -2.39 -0.02 -0.39 16 35 H 0.17 0.47 7.20 -2.39 -0.02 0.45 16 36 H 0.16 0.54 7.66 -2.39 -0.02 0.52 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.13 -0.10 5.95 -2.39 -0.01 -0.11 16 39 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 43 H 0.35 11.72 8.04 -89.69 -0.72 11.00 16 44 H 0.09 3.41 7.56 -2.39 -0.02 3.39 16 45 H 0.06 2.20 8.06 -2.39 -0.02 2.19 16 46 H 0.39 21.03 7.90 -92.70 -0.73 20.30 16 47 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 48 H 0.05 1.83 6.48 -2.39 -0.02 1.81 16 49 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -96.03 395.95 0.57 -95.45 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.47 Total: 34.05 kcal Atomic # 6 Polarization: 29.75 SS G_CDS: 8.08 Total: 37.82 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -9.57 Total: -136.23 kcal Atomic # 8 Polarization: -78.27 SS G_CDS: 0.51 Total: -77.76 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -96.03 0.57 -95.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210009850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.410 kcal (2) G-P(sol) polarization free energy of solvation -96.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds