Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00415 * 2 1 4 4 C 1.34780 * 119.99723 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99941 * 0.02562 * 4 2 1 6 6 C 1.50706 * 120.00006 * 179.97438 * 4 2 1 7 7 C 1.50700 * 109.46967 * 179.97438 * 6 4 2 8 8 O 1.21278 * 120.00227 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99447 * 179.97438 * 7 6 4 10 10 C 1.46922 * 120.63494 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77421 * 126.40932 * 10 9 7 12 12 C 1.53042 * 109.31489 * 54.63715 * 11 10 9 13 13 C 1.53048 * 109.53665 * 298.63586 * 12 11 10 14 14 H 1.08996 * 109.52505 * 301.39688 * 13 12 11 15 15 N 1.46895 * 109.49493 * 181.31311 * 13 12 11 16 16 C 1.46906 * 110.99789 * 155.16054 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46988 * 60.00440 * 24 22 20 26 26 H 1.48496 * 109.47065 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47452 * 300.00298 * 24 22 20 28 28 C 1.46931 * 120.62654 * 180.02562 * 9 7 6 29 29 H 1.08990 * 109.47379 * 270.00510 * 1 2 3 30 30 H 1.09002 * 109.46541 * 30.00216 * 1 2 3 31 31 H 1.08998 * 109.46877 * 150.00027 * 1 2 3 32 32 H 1.08999 * 109.46893 * 239.99900 * 3 2 1 33 33 H 1.09001 * 109.46710 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47163 * 119.99687 * 3 2 1 35 35 H 1.09005 * 109.46846 * 60.00369 * 6 4 2 36 36 H 1.08995 * 109.47123 * 300.00051 * 6 4 2 37 37 H 1.08993 * 109.59002 * 246.19481 * 10 9 7 38 38 H 1.09000 * 109.58230 * 6.48323 * 10 9 7 39 39 H 1.09000 * 109.50070 * 174.58758 * 11 10 9 40 40 H 1.08998 * 109.50005 * 294.65480 * 11 10 9 41 41 H 1.08991 * 109.46462 * 178.61749 * 12 11 10 42 42 H 1.08995 * 109.45688 * 58.65065 * 12 11 10 43 43 H 1.00902 * 111.00273 * 279.11577 * 15 13 12 44 44 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 45 45 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 46 46 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.58700 * 113.80394 * 28 9 7 49 49 H 1.09005 * 109.70478 * 353.44434 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6459 -1.1673 -0.0001 7 6 4.1481 -2.5882 0.0013 8 8 3.3600 -3.5100 0.0022 9 7 5.4732 -2.8344 0.0006 10 6 6.4402 -1.7283 -0.0022 11 6 7.4139 -1.9218 1.1646 12 6 8.0482 -3.3114 1.0695 13 6 6.9569 -4.3799 1.1687 14 1 6.4216 -4.2674 2.1115 15 7 7.5699 -5.7135 1.1090 16 6 6.7176 -6.7144 1.7647 17 6 7.3773 -8.0670 1.6831 18 8 8.4519 -8.1854 1.1331 19 7 6.7732 -9.1449 2.2211 20 6 7.3736 -10.3753 2.1472 21 1 8.3304 -10.4808 1.6576 22 6 6.7510 -11.4865 2.7024 23 7 5.5869 -11.3581 3.2986 24 14 7.5687 -13.1630 2.6011 25 1 8.8871 -13.1126 3.2827 26 1 6.7075 -14.1746 3.2645 27 1 7.7618 -13.5344 1.1764 28 6 5.9781 -4.2143 0.0013 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 2.8242 1.3263 -0.8900 33 1 1.4893 2.0971 -0.0005 34 1 2.8242 1.3264 0.8900 35 1 4.0096 -0.6530 0.8895 36 1 4.0089 -0.6541 -0.8905 37 1 6.9920 -1.7276 -0.9421 38 1 5.9126 -0.7815 0.1126 39 1 8.1940 -1.1619 1.1174 40 1 6.8745 -1.8314 2.1074 41 1 8.7597 -3.4424 1.8847 42 1 8.5666 -3.4094 0.1158 43 1 7.7696 -5.9774 0.1558 44 1 6.5756 -6.4417 2.8104 45 1 5.7500 -6.7517 1.2642 46 1 5.9140 -9.0501 2.6612 47 1 5.1522 -12.1340 3.6858 48 1 6.4923 -4.4158 -0.9385 49 1 5.1471 -4.9097 0.1197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210009853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -91.597777 kcal Electronic energy + Delta-G solvation = -29742.266928 eV Core-core repulsion = 25511.792348 eV Total energy + Delta-G solvation = -4230.474580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84137 -39.63706 -38.30886 -37.50769 -35.79117 -35.08654 -33.80626 -32.52320 -31.58653 -31.16665 -29.71784 -28.25154 -26.51506 -26.11205 -25.19083 -24.07123 -22.47554 -21.17017 -20.08810 -19.18542 -18.84418 -17.98605 -17.82786 -16.80321 -16.61488 -16.31895 -15.97501 -15.76873 -15.37477 -14.99058 -14.63683 -14.58847 -14.33176 -14.06083 -13.76208 -13.70969 -13.55922 -13.34139 -13.24146 -13.12036 -13.09776 -12.95535 -12.66381 -12.40344 -12.22564 -12.17320 -11.59436 -11.54063 -11.46064 -11.15486 -11.03673 -10.97232 -10.71645 -10.40103 -10.24405 -10.16080 -9.59461 -9.45067 -9.07475 -8.94744 -8.39880 -7.99288 -7.90417 -6.36016 -3.77084 2.30523 2.37329 2.53836 2.91203 3.24194 3.29558 3.33989 3.96075 4.00357 4.07931 4.19191 4.31249 4.52686 4.60116 4.63775 4.70583 4.73119 4.79297 4.82197 4.87377 4.94132 5.07834 5.11318 5.19432 5.20787 5.24489 5.30367 5.43144 5.46090 5.54280 5.61895 5.69329 5.80175 5.88711 6.02899 6.04479 6.12529 6.19237 6.25474 6.34872 6.89410 7.18035 7.23534 7.60044 7.65366 7.86950 8.10720 8.11203 8.66599 9.22765 9.59884 10.11141 10.81602 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.002103 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.242344 B =13312.182701 C =14825.284104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.630 5.630 3 C 0.079 3.921 4 C 0.510 3.490 5 O -0.487 6.487 6 C -0.160 4.160 7 C 0.511 3.489 8 O -0.492 6.492 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.134 4.134 12 C -0.108 4.108 13 C 0.076 3.924 14 H 0.080 0.920 15 N -0.656 5.656 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.932 3.068 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.083 3.917 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.350 0.650 44 H 0.086 0.914 45 H 0.046 0.954 46 H 0.393 0.607 47 H 0.272 0.728 48 H 0.068 0.932 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 32.085 -6.050 33.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.367 5.367 3 C -0.065 4.065 4 C 0.296 3.704 5 O -0.359 6.359 6 C -0.203 4.203 7 C 0.296 3.704 8 O -0.364 6.364 9 N -0.348 5.348 10 C -0.018 4.018 11 C -0.173 4.173 12 C -0.146 4.146 13 C -0.036 4.036 14 H 0.098 0.902 15 N -0.288 5.288 16 C -0.085 4.085 17 C 0.227 3.773 18 O -0.469 6.469 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.042 4.042 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.170 0.830 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.882 30.806 -5.766 31.719 hybrid contribution -0.810 -0.592 -0.337 1.058 sum -5.692 30.214 -6.104 31.345 Atomic orbital electron populations 1.21649 0.78895 1.03137 1.01910 1.47779 1.07174 1.06144 1.75631 1.21808 0.97481 0.85464 1.01715 1.20054 0.89289 0.83557 0.77541 1.90891 1.69255 1.30049 1.45656 1.21637 0.94731 0.97743 1.06193 1.19976 0.82084 0.90631 0.77701 1.90886 1.53808 1.45331 1.46362 1.48071 1.05043 1.07269 1.74459 1.21792 0.91227 0.89288 0.99442 1.21935 0.98700 0.98221 0.98453 1.21494 0.97681 0.92153 1.03247 1.21977 0.93538 0.90241 0.97839 0.90164 1.60264 1.44714 0.99917 1.23862 1.21749 0.94451 0.92044 1.00242 1.19779 0.87440 0.85210 0.84903 1.90515 1.22600 1.85585 1.48236 1.41864 1.21026 1.06745 1.50295 1.19651 1.05066 0.83488 1.34753 0.87964 1.25279 0.95985 1.00070 0.96679 1.69611 1.15331 1.31796 1.37469 0.85908 0.78770 0.80885 0.78576 1.19909 1.21002 1.19923 1.22538 0.99157 0.83037 0.99426 0.92761 0.91274 0.90445 0.92046 0.90294 0.91997 0.86203 0.86278 0.91092 0.90050 0.90357 0.91402 0.90507 0.91594 0.82996 0.89568 0.93568 0.77398 0.91811 0.91346 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.41 59.85 0.62 1.19 16 2 N -0.63 -4.58 3.27 -189.52 -0.62 -5.20 16 3 C 0.08 0.21 9.74 59.84 0.58 0.79 16 4 C 0.51 5.57 7.67 -10.98 -0.08 5.49 16 5 O -0.49 -8.16 13.76 -18.96 -0.26 -8.42 16 6 C -0.16 -1.21 3.35 -29.03 -0.10 -1.31 16 7 C 0.51 6.33 7.69 -10.99 -0.08 6.25 16 8 O -0.49 -8.95 13.60 -18.96 -0.26 -9.21 16 9 N -0.61 -6.31 2.97 -172.73 -0.51 -6.82 16 10 C 0.11 0.64 6.34 -3.71 -0.02 0.62 16 11 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 12 C -0.11 -1.05 5.49 -26.69 -0.15 -1.20 16 13 C 0.08 0.95 2.62 -67.56 -0.18 0.77 16 14 H 0.08 1.07 7.80 -51.93 -0.41 0.67 16 15 N -0.66 -10.70 5.88 -107.83 -0.63 -11.33 16 16 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 17 C 0.44 10.80 7.82 -10.98 -0.09 10.71 16 18 O -0.58 -16.21 15.78 5.54 0.09 -16.12 16 19 N -0.56 -14.86 5.29 -10.96 -0.06 -14.92 16 20 C -0.30 -8.63 9.68 -14.93 -0.14 -8.77 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -25.38 13.05 55.50 0.72 -24.65 16 24 Si 0.93 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.08 1.03 5.69 -3.68 -0.02 1.01 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 31 H 0.08 0.68 7.42 -51.93 -0.39 0.29 16 32 H 0.06 0.09 7.85 -51.93 -0.41 -0.32 16 33 H 0.08 0.10 7.79 -51.93 -0.40 -0.31 16 34 H 0.06 0.10 7.85 -51.93 -0.41 -0.31 16 35 H 0.12 0.54 7.42 -51.93 -0.39 0.15 16 36 H 0.12 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.26 5.93 -51.93 -0.31 -0.05 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.35 5.85 8.12 -39.29 -0.32 5.53 16 44 H 0.09 1.51 8.06 -51.93 -0.42 1.09 16 45 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 46 H 0.39 10.02 7.90 -40.82 -0.32 9.70 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 49 H 0.09 1.43 6.48 -51.93 -0.34 1.10 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -39.35 396.63 -8.29 -47.64 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -7.77 Total: 10.55 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 0.05 Total: 15.87 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -1.10 Total: -62.92 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.43 Total: -33.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.35 -8.29 -47.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210009853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.961 kcal (2) G-P(sol) polarization free energy of solvation -39.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds