Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46701 * 2 1 4 4 C 1.52990 * 109.47542 * 304.81416 * 3 2 1 5 5 C 1.53005 * 109.47384 * 294.68015 * 4 3 2 6 6 C 1.52995 * 109.46905 * 64.81519 * 3 2 1 7 7 N 1.46909 * 109.47200 * 64.99665 * 6 3 2 8 8 C 1.46485 * 110.99769 * 66.04672 * 7 6 3 9 9 C 1.51636 * 111.12687 * 189.65125 * 8 7 6 10 10 C 1.51680 * 113.70533 * 312.95733 * 9 8 7 11 11 H 1.08999 * 112.64213 * 254.33882 * 10 9 8 12 12 C 1.54563 * 111.75978 * 125.35678 * 10 9 8 13 13 N 1.50097 * 85.04125 * 267.36677 * 12 10 9 14 14 C 1.34777 * 135.00884 * 154.03876 * 13 12 10 15 15 O 1.21283 * 119.99986 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.00012 * 0.05608 * 14 13 12 17 17 S 1.81005 * 109.47325 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99913 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00415 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99512 * 179.97438 * 18 17 16 21 21 N 1.31631 * 120.00451 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99586 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47211 * 60.00250 * 22 20 18 24 24 H 1.48501 * 109.46808 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47270 * 299.99763 * 22 20 18 26 26 C 1.46954 * 90.06572 * 334.08011 * 13 12 10 27 27 H 1.09001 * 112.92606 * 272.61937 * 26 13 12 28 28 C 1.46926 * 111.00200 * 188.93037 * 7 6 3 29 29 H 1.09001 * 109.47572 * 65.90031 * 1 2 3 30 30 H 1.09002 * 109.47126 * 305.89322 * 1 2 3 31 31 H 1.09006 * 109.46841 * 185.89577 * 1 2 3 32 32 H 1.08997 * 109.47013 * 120.00728 * 2 1 3 33 33 H 1.09006 * 109.46698 * 240.00606 * 2 1 3 34 34 H 1.08999 * 109.46506 * 184.81302 * 3 2 1 35 35 H 1.09001 * 109.47079 * 54.67448 * 4 3 2 36 36 H 1.08998 * 109.47514 * 174.67938 * 4 3 2 37 37 H 1.09008 * 109.46555 * 305.98608 * 5 4 3 38 38 H 1.08991 * 109.47295 * 65.98423 * 5 4 3 39 39 H 1.09002 * 109.47228 * 185.99067 * 5 4 3 40 40 H 1.09001 * 109.47276 * 184.99545 * 6 3 2 41 41 H 1.08996 * 109.47821 * 305.00014 * 6 3 2 42 42 H 1.09004 * 109.14866 * 310.06925 * 8 7 6 43 43 H 1.08995 * 109.15028 * 69.22522 * 8 7 6 44 44 H 1.09000 * 108.63849 * 74.05331 * 9 8 7 45 45 H 1.08998 * 108.63386 * 192.00756 * 9 8 7 46 46 H 1.08999 * 113.81642 * 21.91958 * 12 10 9 47 47 H 1.09007 * 113.81386 * 153.45017 * 12 10 9 48 48 H 1.09001 * 109.47177 * 299.99951 * 16 14 13 49 49 H 1.08999 * 109.47187 * 59.99669 * 16 14 13 50 50 H 0.96995 * 119.99965 * 179.97438 * 21 20 18 51 51 H 1.08996 * 109.43745 * 292.23734 * 28 7 6 52 52 H 1.09006 * 109.43614 * 52.11893 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4335 2.1979 -1.1842 5 6 1.9486 1.5939 -2.4922 6 6 1.6311 2.1279 1.3054 7 7 2.3090 1.4760 2.4339 8 6 3.7572 1.6861 2.3687 9 6 4.4807 0.8268 3.3873 10 6 3.8654 0.8753 4.7729 11 1 4.4554 1.4661 5.4735 12 6 3.5244 -0.5378 5.2981 13 7 2.1684 -0.2893 4.7046 14 6 1.1782 -1.0704 4.2293 15 8 0.1626 -0.5670 3.7980 16 6 1.3327 -2.5695 4.2345 17 16 -0.1544 -3.3317 3.5391 18 6 0.2867 -5.0330 3.6644 19 1 1.2432 -5.3137 4.0797 20 6 -0.5957 -6.0125 3.2301 21 7 -1.7619 -5.6704 2.7243 22 14 -0.1284 -7.8162 3.3636 23 1 0.1169 -8.1600 4.7872 24 1 -1.2343 -8.6544 2.8349 25 1 1.1038 -8.0680 2.5741 26 6 2.3663 1.1591 4.8545 27 1 2.0571 1.5311 5.8313 28 6 1.7837 1.9634 3.7165 29 1 -0.3634 0.4196 -0.9381 30 1 -0.3633 0.6025 0.8325 31 1 -0.3633 -1.0223 0.1056 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.1265 1.4437 -0.0862 35 1 0.3471 2.1162 -1.1494 36 1 1.7208 3.2480 -1.1310 37 1 3.0385 1.5787 -2.4809 38 1 1.5721 0.5763 -2.5956 39 1 1.6023 2.1966 -3.3319 40 1 1.9162 3.1793 1.2685 41 1 0.5518 2.0485 1.4350 42 1 4.1110 1.4306 1.3698 43 1 3.9756 2.7355 2.5666 44 1 4.4741 -0.2061 3.0392 45 1 5.5149 1.1639 3.4556 46 1 4.0890 -1.3351 4.8148 47 1 3.5223 -0.6145 6.3855 48 1 2.1988 -2.8476 3.6339 49 1 1.4738 -2.9166 5.2581 50 1 -2.3783 -6.3549 2.4206 51 1 2.0629 3.0086 3.8491 52 1 0.6972 1.8754 3.7205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221291409.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -6.687643 kcal Electronic energy + Delta-G solvation = -29440.953921 eV Core-core repulsion = 25760.454536 eV Total energy + Delta-G solvation = -3680.499386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89573 -38.39025 -37.37362 -35.42115 -32.36767 -32.09983 -30.94554 -30.43609 -28.99277 -27.59789 -26.42872 -25.40625 -24.14751 -23.31074 -23.07597 -21.69709 -20.07508 -18.71517 -18.00395 -17.51888 -16.57434 -16.09901 -15.81104 -15.52252 -15.22549 -14.91279 -14.75172 -14.50914 -14.15896 -13.81495 -13.61802 -13.45788 -13.32488 -12.83586 -12.70177 -12.57516 -12.51763 -12.41647 -12.14871 -11.83227 -11.72281 -11.59182 -11.45287 -11.30975 -11.10578 -10.99930 -10.97635 -10.93124 -10.72926 -10.69065 -10.35563 -10.18749 -10.09699 -9.98883 -9.74256 -8.99850 -8.97838 -8.29390 -8.15239 -8.12766 -6.39943 -6.15349 -3.83977 2.91157 3.26769 3.28316 3.32074 3.39188 3.67112 3.82726 4.19829 4.27402 4.58688 4.69841 4.86587 4.92133 5.00317 5.04068 5.10381 5.18185 5.19465 5.22567 5.29335 5.30102 5.40896 5.43773 5.50178 5.55828 5.57961 5.66534 5.68445 5.75598 5.76271 5.79498 5.84813 5.88963 5.95912 6.00306 6.02532 6.05590 6.09373 6.15507 6.17588 6.27891 6.32316 6.34837 6.42636 6.62330 6.84732 6.91280 7.16345 7.19214 7.65188 8.13782 8.41219 8.88558 9.29911 10.91918 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.003836 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.462190 B = 7296.927664 C = 9066.900863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.150 4.150 6 C 0.063 3.937 7 N -0.512 5.512 8 C 0.055 3.945 9 C -0.094 4.094 10 C -0.114 4.114 11 H 0.084 0.916 12 C 0.102 3.898 13 N -0.634 5.634 14 C 0.566 3.434 15 O -0.511 6.511 16 C -0.143 4.143 17 S -0.056 6.056 18 C -0.535 4.535 19 H 0.070 0.930 20 C 0.075 3.925 21 N -0.868 5.868 22 Si 0.915 3.085 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.147 3.853 27 H 0.087 0.913 28 C 0.055 3.945 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.024 0.976 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.268 0.732 51 H 0.035 0.965 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.046 18.396 -0.800 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.101 4.101 4 C -0.160 4.160 5 C -0.207 4.207 6 C -0.065 4.065 7 N -0.236 5.236 8 C -0.073 4.073 9 C -0.132 4.132 10 C -0.133 4.133 11 H 0.102 0.898 12 C -0.021 4.021 13 N -0.374 5.374 14 C 0.355 3.645 15 O -0.385 6.385 16 C -0.294 4.294 17 S 0.171 5.829 18 C -0.683 4.683 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.504 5.504 22 Si 0.742 3.258 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C 0.043 3.957 27 H 0.104 0.896 28 C -0.074 4.074 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.078 0.922 51 H 0.053 0.947 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.072 18.416 -1.647 22.082 hybrid contribution 1.700 -0.987 0.817 2.129 sum 13.772 17.429 -0.830 22.229 Atomic orbital electron populations 1.21771 0.95757 1.02587 1.00319 1.21362 0.96389 0.94735 1.01865 1.21226 0.99502 0.96420 0.92904 1.21600 1.01334 0.98587 0.94461 1.21766 1.00748 1.01347 0.96869 1.22192 0.99816 0.94236 0.90233 1.61813 1.02791 1.57631 1.01331 1.21739 0.88884 0.97061 0.99623 1.20782 0.97983 1.01688 0.92700 1.22565 0.95665 0.97142 0.97946 0.89755 1.23874 0.82810 0.97045 0.98326 1.50333 1.17583 1.06366 1.63105 1.19688 0.80975 0.87588 0.76258 1.90658 1.27504 1.75011 1.45287 1.23449 1.07198 0.94045 1.04679 1.85319 1.15791 1.01572 1.80230 1.22842 1.05788 0.91574 1.48093 0.91224 1.24954 0.94503 0.99357 0.94623 1.70009 1.07456 1.34023 1.38874 0.86277 0.78161 0.82808 0.78572 1.20004 1.20840 1.19987 1.21950 0.92872 0.83186 0.97710 0.89564 1.21761 1.01403 0.95140 0.89060 0.93979 0.92445 0.92228 0.90607 0.93168 0.91779 0.91300 0.92863 0.93124 0.92214 0.93239 0.95802 0.90074 0.90488 0.95714 0.91021 0.91647 0.89894 0.90020 0.89894 0.90126 0.92243 0.94690 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.12 37.16 0.34 -1.98 16 2 C -0.11 -1.53 5.30 -26.73 -0.14 -1.67 16 3 C -0.08 -0.94 2.09 -90.63 -0.19 -1.13 16 4 C -0.12 -1.24 5.09 -26.73 -0.14 -1.38 16 5 C -0.15 -1.44 9.53 37.16 0.35 -1.09 16 6 C 0.06 0.75 4.20 -3.82 -0.02 0.73 16 7 N -0.51 -6.35 3.92 -237.06 -0.93 -7.28 16 8 C 0.06 0.55 5.28 -4.74 -0.03 0.53 16 9 C -0.09 -0.85 5.75 -28.09 -0.16 -1.02 16 10 C -0.11 -1.01 4.33 -90.63 -0.39 -1.41 16 11 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 12 C 0.10 1.06 8.21 -1.25 -0.01 1.05 16 13 N -0.63 -9.24 3.30 -170.67 -0.56 -9.81 16 14 C 0.57 11.09 7.97 -10.99 -0.09 11.00 16 15 O -0.51 -11.65 15.38 5.56 0.09 -11.56 16 16 C -0.14 -3.06 5.96 36.00 0.21 -2.85 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 18 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.16 5.49 -17.43 -0.10 2.07 16 21 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 22 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.15 1.69 4.48 -68.82 -0.31 1.38 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 C 0.05 0.67 4.68 -4.80 -0.02 0.65 16 29 H 0.04 0.57 6.59 -51.93 -0.34 0.23 16 30 H 0.06 0.96 6.21 -51.93 -0.32 0.64 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.31 7.62 -51.93 -0.40 0.92 16 33 H 0.05 0.69 6.95 -51.93 -0.36 0.33 16 34 H 0.06 0.71 6.16 -51.93 -0.32 0.39 16 35 H 0.07 0.75 6.18 -51.93 -0.32 0.43 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.06 0.62 6.99 -51.93 -0.36 0.26 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.26 8.12 -51.93 -0.42 -0.17 16 41 H 0.08 1.11 6.06 -51.93 -0.31 0.79 16 42 H 0.08 0.77 5.97 -51.93 -0.31 0.46 16 43 H 0.02 0.23 8.03 -51.93 -0.42 -0.19 16 44 H 0.07 0.77 7.36 -51.93 -0.38 0.39 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 47 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 48 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 49 H 0.08 1.64 8.14 -51.92 -0.42 1.22 16 50 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 51 H 0.04 0.36 8.04 -51.93 -0.42 -0.06 16 52 H 0.09 1.37 7.28 -51.93 -0.38 0.99 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -33.45 407.04 -11.40 -44.85 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -9.24 Total: 0.77 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.39 Total: -10.32 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -0.76 Total: -42.82 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.45 -11.40 -44.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221291409.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.163 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds