Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 C 1.53004 * 109.47036 * 119.99503 * 2 1 3 5 5 C 1.53005 * 109.47051 * 175.00128 * 4 2 1 6 6 C 1.52995 * 109.47435 * 179.97438 * 5 4 2 7 7 N 1.46896 * 109.47484 * 180.02562 * 6 5 4 8 8 C 1.46473 * 110.98535 * 63.53345 * 7 6 5 9 9 C 1.53057 * 108.74506 * 191.01308 * 8 7 6 10 10 C 1.53117 * 109.08037 * 297.31467 * 9 8 7 11 11 H 1.08994 * 113.48584 * 272.01094 * 10 9 8 12 12 C 1.54480 * 111.18104 * 140.37149 * 10 9 8 13 13 N 1.47738 * 85.89674 * 270.38910 * 12 10 9 14 14 C 1.34779 * 134.86822 * 154.39824 * 13 12 10 15 15 O 1.21280 * 120.00211 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99655 * 359.97438 * 14 13 12 17 17 S 1.80996 * 109.47081 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00380 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00117 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99920 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00145 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46987 * 90.00339 * 22 20 18 24 24 H 1.48501 * 109.47260 * 210.00042 * 22 20 18 25 25 H 1.48499 * 109.47375 * 330.00144 * 22 20 18 26 26 C 1.46986 * 90.27222 * 334.39871 * 13 12 10 27 27 H 1.09005 * 111.86318 * 273.52224 * 26 13 12 28 28 C 1.45457 * 111.00147 * 190.00433 * 7 6 5 29 29 H 1.09002 * 109.46980 * 299.99961 * 1 2 3 30 30 H 1.08996 * 109.47135 * 60.00526 * 1 2 3 31 31 H 1.08999 * 109.46709 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47452 * 239.99566 * 2 1 3 33 33 H 1.09004 * 109.47063 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47324 * 299.99612 * 3 2 1 35 35 H 1.08993 * 109.47449 * 60.00106 * 3 2 1 36 36 H 1.08999 * 109.47195 * 55.00801 * 4 2 1 37 37 H 1.08996 * 109.47239 * 295.00160 * 4 2 1 38 38 H 1.09009 * 109.47247 * 59.99949 * 5 4 2 39 39 H 1.08996 * 109.47125 * 300.00101 * 5 4 2 40 40 H 1.08999 * 109.46874 * 59.99822 * 6 5 4 41 41 H 1.09005 * 109.47316 * 300.00311 * 6 5 4 42 42 H 1.08996 * 109.50463 * 71.28406 * 8 7 6 43 43 H 1.09003 * 109.66484 * 310.83965 * 8 7 6 44 44 H 1.09002 * 109.54876 * 177.41137 * 9 8 7 45 45 H 1.09003 * 109.54865 * 57.22060 * 9 8 7 46 46 H 1.09002 * 113.80589 * 24.62821 * 12 10 9 47 47 H 1.08996 * 113.80777 * 156.14077 * 12 10 9 48 48 H 1.09010 * 109.47086 * 299.99830 * 16 14 13 49 49 H 1.08997 * 109.47446 * 60.00114 * 16 14 13 50 50 H 0.97000 * 120.00036 * 180.02562 * 21 20 18 51 51 H 1.09001 * 108.50075 * 64.62281 * 28 7 6 52 52 H 1.09000 * 108.50056 * 307.16385 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1881 6 6 4.0750 -1.5515 2.4376 7 7 5.5390 -1.6563 2.3791 8 6 6.1612 -0.3305 2.4003 9 6 7.6466 -0.4787 2.0623 10 6 8.3227 -1.3301 3.1405 11 1 8.6857 -0.7493 3.9883 12 6 9.3533 -2.2999 2.5210 13 7 8.2297 -3.2522 2.4061 14 6 7.9490 -4.2995 1.6055 15 8 6.9131 -4.9133 1.7507 16 6 8.9218 -4.7069 0.5291 17 16 8.2646 -6.1342 -0.3692 18 6 9.5639 -6.3889 -1.5317 19 1 10.4284 -5.7417 -1.5258 20 6 9.4765 -7.4215 -2.4552 21 7 8.4227 -8.2101 -2.4628 22 14 10.8536 -7.6910 -3.6881 23 1 11.8571 -8.6227 -3.1134 24 1 10.2950 -8.2728 -4.9349 25 1 11.5037 -6.3919 -3.9960 26 6 7.5436 -2.5884 3.5237 27 1 7.8607 -2.9854 4.4881 28 6 6.0409 -2.5348 3.4242 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6055 -1.7198 1.2953 37 1 1.7516 -0.1582 2.1370 38 1 3.9995 0.1677 1.1421 39 1 3.8532 -1.3939 0.3004 40 1 3.6404 -2.5500 2.4841 41 1 3.7866 -0.9881 3.3251 42 1 6.0540 0.1060 3.3933 43 1 5.6807 0.3120 1.6623 44 1 8.1131 0.5059 2.0292 45 1 7.7532 -0.9656 1.0929 46 1 9.7483 -1.9677 1.5609 47 1 10.1306 -2.6183 3.2156 48 1 9.0660 -3.8774 -0.1633 49 1 9.8766 -4.9713 0.9833 50 1 8.3617 -8.9319 -3.1079 51 1 5.6706 -3.5426 3.2362 52 1 5.6428 -2.1968 4.3809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221291572.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -38.360929 kcal Electronic energy + Delta-G solvation = -27931.531795 eV Core-core repulsion = 24249.658953 eV Total energy + Delta-G solvation = -3681.872842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01913 -39.45719 -38.46411 -37.13179 -34.60357 -33.41624 -32.41528 -31.72035 -29.30456 -28.45164 -28.00035 -27.64595 -25.79206 -24.82204 -23.14110 -21.97560 -21.34015 -20.84090 -19.84622 -18.84817 -17.87423 -17.37212 -16.98287 -16.88910 -16.79333 -16.37907 -15.90766 -15.64463 -15.61346 -15.12740 -14.93137 -14.79175 -14.56896 -14.32318 -14.11515 -13.93625 -13.54497 -13.32907 -13.24410 -13.14361 -13.02699 -12.93318 -12.90082 -12.77227 -12.57222 -12.49972 -12.34537 -11.98663 -11.92362 -11.74163 -11.66968 -11.51858 -11.41716 -11.21100 -11.15692 -11.14243 -10.57620 -10.29072 -9.58807 -9.07396 -8.68733 -8.35832 -6.14527 1.22958 1.41264 1.43211 1.54819 1.71704 2.04052 2.26600 2.85614 2.97794 3.22966 3.32955 3.63617 3.79994 3.81650 3.92788 4.02777 4.06469 4.09676 4.21602 4.24680 4.28168 4.35974 4.43383 4.49712 4.50654 4.51487 4.59478 4.59750 4.64571 4.73236 4.74675 4.81638 4.87395 4.88437 4.90938 4.98222 5.03521 5.04733 5.08600 5.14837 5.23629 5.25224 5.30326 5.35503 5.39266 5.47693 5.51495 5.54831 6.18092 6.20996 6.35306 6.74739 7.04635 7.26390 8.73633 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009752 B = 0.002743 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.415379 B =10204.369010 C =12036.227959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.109 4.109 6 C 0.068 3.932 7 N -0.564 5.564 8 C 0.059 3.941 9 C -0.099 4.099 10 C -0.095 4.095 11 H 0.137 0.863 12 C 0.099 3.901 13 N -0.638 5.638 14 C 0.556 3.444 15 O -0.565 6.565 16 C -0.116 4.116 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.080 0.920 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.258 1.258 26 C 0.133 3.867 27 H 0.106 0.894 28 C 0.064 3.936 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.271 0.729 51 H 0.049 0.951 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 25.345 13.640 29.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.146 4.146 6 C -0.060 4.060 7 N -0.289 5.289 8 C -0.068 4.068 9 C -0.137 4.137 10 C -0.114 4.114 11 H 0.155 0.845 12 C -0.023 4.023 13 N -0.375 5.375 14 C 0.345 3.655 15 O -0.444 6.444 16 C -0.267 4.267 17 S 0.077 5.923 18 C -0.694 4.694 19 H 0.098 0.902 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.182 1.182 26 C 0.030 3.970 27 H 0.124 0.876 28 C -0.064 4.064 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.128 0.872 48 H 0.114 0.886 49 H 0.118 0.882 50 H 0.080 0.920 51 H 0.068 0.932 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.416 23.920 13.238 28.082 hybrid contribution 1.331 -0.190 -0.402 1.403 sum -5.085 23.730 12.836 27.454 Atomic orbital electron populations 1.21825 0.94666 1.01623 1.02178 1.21123 0.96178 0.96878 0.97721 1.21854 1.01072 0.95197 1.02057 1.21560 0.94337 1.00251 0.98398 1.21595 0.95724 1.00475 0.96838 1.21987 0.86403 0.99732 0.97859 1.60476 1.05791 1.13564 1.49114 1.22040 0.94980 0.88831 1.00927 1.21497 0.94439 1.00454 0.97292 1.22993 0.94541 0.93947 0.99889 0.84478 1.23780 0.90743 0.85495 1.02233 1.49951 1.24262 1.29666 1.33601 1.19552 0.86012 0.78196 0.81709 1.90648 1.27893 1.54011 1.71871 1.23244 1.01713 1.02476 0.99285 1.85566 1.31372 1.35620 1.39744 1.23177 1.06737 1.19617 1.19856 0.90174 1.26168 0.99475 0.94285 0.99300 1.70192 1.30101 1.17919 1.36584 0.84926 0.77159 0.79038 0.76671 1.19126 1.20132 1.18202 1.22364 0.92553 0.91551 0.90507 0.87609 1.21138 0.94891 0.97293 0.93104 0.91985 0.92336 0.93219 0.92646 0.92657 0.92580 0.91980 0.92992 0.90875 0.90394 0.93939 0.93266 0.93539 0.93254 0.89902 0.87914 0.93588 0.89488 0.87196 0.88636 0.88213 0.91955 0.93208 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.19 71.98 0.66 -1.44 16 2 C -0.10 -1.66 2.92 -10.79 -0.03 -1.69 16 3 C -0.14 -1.99 8.95 71.98 0.64 -1.34 16 4 C -0.11 -1.88 4.68 30.60 0.14 -1.73 16 5 C -0.11 -2.23 4.86 30.59 0.15 -2.08 16 6 C 0.07 1.52 4.93 86.30 0.43 1.94 16 7 N -0.56 -13.94 4.58 -905.73 -4.15 -18.09 16 8 C 0.06 1.01 5.34 86.40 0.46 1.48 16 9 C -0.10 -1.56 5.72 30.65 0.18 -1.39 16 10 C -0.09 -1.32 4.45 -10.27 -0.05 -1.37 16 11 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 12 C 0.10 1.74 7.97 86.46 0.69 2.43 16 13 N -0.64 -18.54 3.37 -820.37 -2.76 -21.30 16 14 C 0.56 23.17 8.00 87.66 0.70 23.87 16 15 O -0.57 -28.78 15.11 -3.03 -0.05 -28.82 16 16 C -0.12 -5.12 5.93 71.24 0.42 -4.69 16 17 S -0.15 -8.85 20.57 -56.49 -1.16 -10.01 16 18 C -0.55 -32.47 9.50 67.96 0.65 -31.82 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -57.58 13.22 21.65 0.29 -57.30 16 22 Si 1.00 44.73 29.55 68.60 2.03 46.76 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 C 0.13 2.90 4.29 43.92 0.19 3.09 16 27 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 28 C 0.06 1.63 5.02 85.83 0.43 2.06 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.05 0.78 6.56 -2.38 -0.02 0.76 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.36 4.69 -2.38 -0.01 1.35 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.32 8.07 -2.39 -0.02 1.31 16 41 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 1.35 5.94 -2.39 -0.01 1.34 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.05 7.69 -2.39 -0.02 1.03 16 46 H 0.09 1.51 7.95 -2.39 -0.02 1.49 16 47 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 49 H 0.10 4.03 8.14 -2.40 -0.02 4.01 16 50 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 51 H 0.05 1.74 6.84 -2.39 -0.02 1.73 16 52 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 Total: -1.00 -81.47 415.32 1.18 -80.28 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.86 Total: 19.98 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 6.13 Total: -11.49 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -6.63 Total: -96.70 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.05 Total: -28.82 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal Total: -81.47 1.18 -80.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221291572.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.920 kcal (2) G-P(sol) polarization free energy of solvation -81.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds