Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 C 1.53002 * 109.47513 * 239.99967 * 2 1 3 5 5 C 1.52998 * 109.47222 * 119.99984 * 2 1 3 6 6 C 1.52996 * 109.47136 * 59.99969 * 5 2 1 7 7 N 1.46898 * 109.47517 * 181.36031 * 6 5 2 8 8 C 1.46400 * 110.99896 * 303.38047 * 7 6 5 9 9 C 1.53095 * 109.00119 * 190.48096 * 8 7 6 10 10 C 1.53160 * 108.80394 * 297.60095 * 9 8 7 11 11 H 1.09005 * 114.52014 * 272.13050 * 10 9 8 12 12 C 1.53910 * 111.74890 * 139.01161 * 10 9 8 13 13 N 1.47216 * 87.74047 * 274.08337 * 12 10 9 14 14 C 1.34771 * 136.37658 * 152.02308 * 13 12 10 15 15 O 1.21287 * 119.99690 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00207 * 0.02562 * 14 13 12 17 17 S 1.81007 * 109.47229 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99752 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00348 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99727 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00067 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47170 * 59.99802 * 22 20 18 24 24 H 1.48498 * 109.47402 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47033 * 300.00102 * 22 20 18 26 26 C 1.46633 * 87.24121 * 332.02559 * 13 12 10 27 27 H 1.09003 * 111.73169 * 275.94590 * 26 13 12 28 28 C 1.45490 * 110.99846 * 70.10373 * 7 6 5 29 29 H 1.09000 * 109.47373 * 300.00211 * 1 2 3 30 30 H 1.08998 * 109.47120 * 60.00016 * 1 2 3 31 31 H 1.09000 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47140 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47044 * 300.00030 * 3 2 1 34 34 H 1.09000 * 109.47103 * 59.99624 * 3 2 1 35 35 H 1.08999 * 109.46784 * 300.00500 * 4 2 1 36 36 H 1.09007 * 109.46672 * 59.99862 * 4 2 1 37 37 H 1.09000 * 109.47088 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.47307 * 300.00135 * 5 2 1 39 39 H 1.09000 * 109.47400 * 180.02562 * 5 2 1 40 40 H 1.09002 * 109.47642 * 301.36226 * 6 5 2 41 41 H 1.09001 * 109.47353 * 61.36111 * 6 5 2 42 42 H 1.08997 * 109.54986 * 310.33958 * 8 7 6 43 43 H 1.09003 * 109.55259 * 70.62934 * 8 7 6 44 44 H 1.09000 * 109.58052 * 177.80980 * 9 8 7 45 45 H 1.09000 * 109.58374 * 57.39752 * 9 8 7 46 46 H 1.08994 * 113.50560 * 159.36752 * 12 10 9 47 47 H 1.08995 * 113.56395 * 28.81124 * 12 10 9 48 48 H 1.09008 * 109.46811 * 299.99356 * 16 14 13 49 49 H 1.08993 * 109.47372 * 59.99441 * 16 14 13 50 50 H 0.96996 * 120.00166 * 179.97438 * 21 20 18 51 51 H 1.08998 * 108.58113 * 306.13626 * 28 7 6 52 52 H 1.09003 * 108.57886 * 63.79865 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1637 1.2492 7 7 1.9926 -2.8467 2.4647 8 6 3.4518 -2.7961 2.5718 9 6 3.9018 -3.7328 3.6961 10 6 3.3116 -3.2355 5.0190 11 1 3.9238 -2.4985 5.5389 12 6 2.8089 -4.3988 5.8923 13 7 1.5352 -4.3230 5.1579 14 6 0.5465 -5.1776 4.8286 15 8 -0.4072 -4.7846 4.1907 16 6 0.6255 -6.6211 5.2539 17 16 -0.8405 -7.5047 4.6652 18 6 -0.4945 -9.1177 5.2841 19 1 0.4133 -9.2996 5.8402 20 6 -1.3887 -10.1547 5.0569 21 7 -2.4953 -9.9330 4.3795 22 14 -1.0216 -11.8650 5.7123 23 1 -0.9010 -11.8129 7.1916 24 1 -2.1244 -12.7861 5.3372 25 1 0.2527 -12.3558 5.1288 26 6 1.8241 -2.9012 4.9453 27 1 1.5133 -2.2946 5.7959 28 6 1.3149 -2.3292 3.6435 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 1.6766 -0.2074 2.1392 39 1 3.1300 -0.7209 1.2495 40 1 0.4402 -2.1639 1.2248 41 1 1.9131 -2.6846 0.3717 42 1 3.8979 -3.1159 1.6301 43 1 3.7659 -1.7772 2.7984 44 1 4.9900 -3.7321 3.7585 45 1 3.5461 -4.7431 3.4942 46 1 2.7181 -4.1424 6.9477 47 1 3.3497 -5.3311 5.7296 48 1 1.5199 -7.0768 4.8287 49 1 0.6710 -6.6775 6.3414 50 1 -3.1200 -10.6578 4.2204 51 1 1.4383 -1.2465 3.6679 52 1 0.2513 -2.5523 3.5587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221291583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -28.342035 kcal Electronic energy + Delta-G solvation = -28410.620177 eV Core-core repulsion = 24729.181786 eV Total energy + Delta-G solvation = -3681.438390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17607 -39.81453 -38.93506 -37.05067 -34.60051 -33.11494 -31.91043 -30.56101 -29.10848 -28.18523 -28.14594 -27.65712 -27.48151 -24.77505 -24.16660 -22.34024 -21.42683 -19.91512 -19.55982 -18.64697 -17.80154 -17.53735 -16.96028 -16.88042 -16.62080 -16.05771 -15.89940 -15.73398 -15.50964 -15.01892 -14.85848 -14.73618 -14.51266 -14.44838 -14.10182 -13.85557 -13.55007 -13.41103 -13.26489 -13.16291 -13.06787 -12.87500 -12.83224 -12.78228 -12.64197 -12.60156 -12.28958 -12.11035 -11.83653 -11.75613 -11.72380 -11.52883 -11.40628 -11.28937 -11.14117 -11.11762 -10.61638 -10.29363 -9.59414 -8.95137 -8.68470 -8.35407 -6.14202 1.22799 1.42853 1.43258 1.53874 1.71898 2.06058 2.26996 2.94719 2.98057 3.23498 3.31384 3.66331 3.78744 3.84009 3.86412 3.94183 4.00018 4.08531 4.24122 4.25073 4.34222 4.38461 4.43677 4.48823 4.52290 4.53422 4.59949 4.63388 4.71917 4.75392 4.76860 4.81964 4.89389 4.90338 4.92827 4.96600 5.04808 5.06975 5.09402 5.14335 5.16902 5.19591 5.28440 5.38532 5.39228 5.48689 5.49203 5.52011 6.18133 6.24571 6.39106 6.78982 7.04871 7.26873 8.73773 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002516 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.998126 B =11126.292126 C =12118.278383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.130 4.130 6 C 0.064 3.936 7 N -0.562 5.562 8 C 0.063 3.937 9 C -0.098 4.098 10 C -0.097 4.097 11 H 0.143 0.857 12 C 0.096 3.904 13 N -0.641 5.641 14 C 0.563 3.437 15 O -0.563 6.563 16 C -0.115 4.115 17 S -0.149 6.149 18 C -0.547 4.547 19 H 0.080 0.920 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.262 1.262 26 C 0.129 3.871 27 H 0.106 0.894 28 C 0.065 3.935 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.044 0.956 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.272 0.728 51 H 0.055 0.945 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.259 23.038 -2.496 30.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.193 4.193 4 C -0.199 4.199 5 C -0.169 4.169 6 C -0.064 4.064 7 N -0.286 5.286 8 C -0.064 4.064 9 C -0.136 4.136 10 C -0.116 4.116 11 H 0.161 0.839 12 C -0.026 4.026 13 N -0.377 5.377 14 C 0.352 3.648 15 O -0.441 6.441 16 C -0.266 4.266 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.098 0.902 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.186 1.186 26 C 0.026 3.974 27 H 0.124 0.876 28 C -0.064 4.064 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.120 0.880 45 H 0.062 0.938 46 H 0.127 0.873 47 H 0.101 0.899 48 H 0.114 0.886 49 H 0.117 0.883 50 H 0.081 0.919 51 H 0.073 0.927 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.391 22.912 -3.579 28.986 hybrid contribution 0.434 -0.910 0.928 1.370 sum 17.825 22.002 -2.651 28.441 Atomic orbital electron populations 1.21940 0.95300 1.01305 1.01702 1.20487 0.95111 0.95976 0.95040 1.21826 1.01162 0.94532 1.01821 1.21911 1.01206 0.99979 0.96822 1.22154 1.01253 0.95768 0.97765 1.22211 0.99547 0.92714 0.91909 1.60628 1.07185 1.58354 1.02458 1.21934 0.86254 0.98853 0.99327 1.21478 1.01184 0.98521 0.92417 1.22942 0.93603 0.98146 0.96929 0.83946 1.23536 0.81179 1.00271 0.97617 1.49533 1.21842 1.11065 1.55288 1.19397 0.80456 0.86260 0.78682 1.90657 1.33525 1.78674 1.41280 1.23231 1.03654 0.95087 1.04649 1.85561 1.26046 1.06698 1.73830 1.23148 1.10314 0.94891 1.41145 0.90168 1.26167 0.93985 1.04151 0.94907 1.70184 1.10933 1.34655 1.39013 0.84983 0.78293 0.75591 0.78985 1.18546 1.20206 1.18630 1.22391 0.95206 0.82519 0.97262 0.87648 1.21225 0.98238 0.97145 0.89774 0.93080 0.92165 0.93622 0.92097 0.92334 0.92846 0.93254 0.92366 0.92043 0.92318 0.90708 0.92913 0.90840 0.90688 0.92796 0.87975 0.93752 0.87253 0.89912 0.88603 0.88257 0.91945 0.92739 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.12 71.98 0.58 -1.91 16 2 C -0.07 -0.97 0.80 -52.18 -0.04 -1.01 16 3 C -0.14 -1.63 8.47 71.98 0.61 -1.02 16 4 C -0.14 -2.04 8.12 71.98 0.58 -1.46 16 5 C -0.13 -2.08 3.60 30.59 0.11 -1.97 16 6 C 0.06 1.42 4.61 86.30 0.40 1.82 16 7 N -0.56 -13.87 4.74 -905.09 -4.29 -18.16 16 8 C 0.06 1.10 4.62 86.43 0.40 1.50 16 9 C -0.10 -1.58 5.75 30.68 0.18 -1.40 16 10 C -0.10 -1.34 4.62 -10.55 -0.05 -1.39 16 11 H 0.14 0.87 8.14 -2.38 -0.02 0.85 16 12 C 0.10 1.69 7.77 81.82 0.64 2.32 16 13 N -0.64 -18.64 3.37 -856.52 -2.88 -21.52 16 14 C 0.56 23.43 8.02 87.66 0.70 24.13 16 15 O -0.56 -28.59 15.25 -3.05 -0.05 -28.64 16 16 C -0.11 -5.07 6.00 71.24 0.43 -4.64 16 17 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 18 C -0.55 -32.50 9.50 67.96 0.65 -31.85 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -57.54 13.22 21.65 0.29 -57.25 16 22 Si 1.00 44.66 29.55 68.60 2.03 46.69 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 C 0.13 2.79 4.10 39.47 0.16 2.95 16 27 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 28 C 0.06 1.62 4.90 85.93 0.42 2.04 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.93 6.40 -2.39 -0.02 0.91 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.82 6.46 -2.39 -0.02 0.81 16 36 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.98 6.50 -2.39 -0.02 0.97 16 39 H 0.07 1.04 6.68 -2.39 -0.02 1.02 16 40 H 0.05 1.43 6.29 -2.39 -0.02 1.41 16 41 H 0.07 1.65 6.50 -2.39 -0.02 1.63 16 42 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 43 H 0.05 0.72 6.92 -2.39 -0.02 0.71 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.04 1.04 7.69 -2.39 -0.02 1.02 16 46 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.45 8.03 -2.39 -0.02 1.43 16 48 H 0.10 3.96 8.14 -2.39 -0.02 3.95 16 49 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 50 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 51 H 0.05 1.10 6.28 -2.39 -0.01 1.09 16 52 H 0.05 1.60 6.99 -2.39 -0.02 1.58 16 Total: -1.00 -80.90 407.30 1.04 -79.86 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.88 Total: 19.61 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 6.23 Total: -10.68 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -6.89 Total: -96.94 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.64 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -80.90 1.04 -79.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221291583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.515 kcal (2) G-P(sol) polarization free energy of solvation -80.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds