Wall clock time and date at job start Sat Apr 11 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 C 1.52995 * 109.46898 * 119.99763 * 2 1 3 5 5 C 1.53008 * 109.46873 * 174.99718 * 4 2 1 6 6 N 1.46900 * 109.46992 * 180.02562 * 5 4 2 7 7 C 1.49314 * 111.00263 * 75.47074 * 6 5 4 8 8 C 1.55028 * 102.76430 * 161.50081 * 7 6 5 9 9 C 1.55049 * 103.30572 * 324.39253 * 8 7 6 10 10 H 1.08995 * 109.32606 * 258.11909 * 9 8 7 11 11 C 1.51200 * 107.27634 * 139.27614 * 9 8 7 12 12 C 1.52084 * 114.38849 * 205.43008 * 11 9 8 13 13 N 1.45506 * 110.65031 * 47.79235 * 12 11 9 14 14 C 1.34778 * 119.38627 * 131.23270 * 13 12 11 15 15 O 1.21278 * 120.00140 * 179.72468 * 14 13 12 16 16 C 1.50703 * 119.99723 * 359.73166 * 14 13 12 17 17 S 1.80993 * 109.47026 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99993 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00153 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00523 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99397 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00627 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00544 * 22 20 18 25 25 H 1.48504 * 109.46636 * 60.00103 * 22 20 18 26 26 C 1.45230 * 121.23709 * 310.95752 * 13 12 11 27 27 C 1.47181 * 110.99520 * 190.00260 * 6 5 4 28 28 H 1.09003 * 103.92388 * 318.07140 * 27 6 5 29 29 H 1.09005 * 109.47019 * 300.00036 * 1 2 3 30 30 H 1.09000 * 109.47450 * 59.99857 * 1 2 3 31 31 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46420 * 240.00184 * 2 1 3 33 33 H 1.09001 * 109.47283 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47079 * 299.99688 * 3 2 1 35 35 H 1.08993 * 109.47585 * 60.00067 * 3 2 1 36 36 H 1.09001 * 109.47305 * 55.00589 * 4 2 1 37 37 H 1.09000 * 109.47807 * 294.99806 * 4 2 1 38 38 H 1.09004 * 109.46791 * 59.99665 * 5 4 2 39 39 H 1.09000 * 109.46976 * 300.00597 * 5 4 2 40 40 H 1.09001 * 110.75259 * 279.82355 * 7 6 5 41 41 H 1.08998 * 110.75359 * 43.17923 * 7 6 5 42 42 H 1.09007 * 110.66015 * 82.38571 * 8 7 6 43 43 H 1.09000 * 110.66278 * 205.49695 * 8 7 6 44 44 H 1.08995 * 108.40492 * 328.03885 * 11 9 8 45 45 H 1.09005 * 108.39402 * 85.22863 * 11 9 8 46 46 H 1.08998 * 110.34174 * 286.95088 * 12 11 9 47 47 H 1.09005 * 108.58750 * 167.50208 * 12 11 9 48 48 H 1.09001 * 109.47144 * 59.99673 * 16 14 13 49 49 H 1.09006 * 109.47011 * 299.99863 * 16 14 13 50 50 H 0.97005 * 119.99723 * 179.97438 * 21 20 18 51 51 H 1.08991 * 108.52028 * 157.90563 * 26 13 12 52 52 H 1.09001 * 108.52102 * 275.57349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0545 -1.5240 2.3871 7 6 3.7934 -2.9917 2.3011 8 6 4.7679 -3.5753 3.3561 9 6 6.0089 -2.6525 3.2447 10 1 6.7853 -3.1596 2.6719 11 6 6.5021 -2.3915 4.6500 12 6 7.2763 -1.0927 4.8128 13 7 6.5624 0.0117 4.1899 14 6 6.3804 1.1548 4.8803 15 8 5.7914 2.0842 4.3702 16 6 6.9089 1.2782 6.2862 17 16 6.5096 2.9184 6.9391 18 6 7.2222 2.7901 8.5454 19 1 7.7173 1.8783 8.8454 20 6 7.1484 3.8612 9.4251 21 7 6.5455 4.9728 9.0593 22 14 7.9033 3.7251 11.1283 23 1 7.6901 4.9953 11.8672 24 1 7.2600 2.6091 11.8671 25 1 9.3597 3.4622 11.0046 26 6 6.0475 -0.0925 2.8360 27 6 5.5208 -1.4409 2.4825 28 1 5.8602 -1.6107 1.4607 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6768 1.9563 0.8899 36 1 1.6054 -1.7198 1.2952 37 1 1.7517 -0.1583 2.1370 38 1 3.9995 0.1675 1.1419 39 1 3.8532 -1.3940 0.3002 40 1 2.7597 -3.2162 2.5641 41 1 4.0304 -3.3685 1.3062 42 1 4.3373 -3.5096 4.3554 43 1 5.0245 -4.6066 3.1139 44 1 5.6437 -2.3921 5.3216 45 1 7.1615 -3.2095 4.9405 46 1 8.2634 -1.1805 4.3590 47 1 7.3913 -0.8878 5.8772 48 1 7.9905 1.1431 6.2809 49 1 6.4505 0.5149 6.9150 50 1 6.4935 5.7213 9.6742 51 1 5.2456 0.6354 2.7136 52 1 6.8490 0.1568 2.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222305712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:07 Heat of formation + Delta-G solvation = -40.208892 kcal Electronic energy + Delta-G solvation = -28252.342764 eV Core-core repulsion = 24570.389788 eV Total energy + Delta-G solvation = -3681.952976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.78874 -38.93441 -37.08042 -35.64313 -33.57585 -32.39544 -31.44453 -30.36193 -28.79346 -27.84714 -27.30805 -25.49456 -24.66494 -23.71621 -22.65508 -21.28566 -20.30470 -20.00018 -18.25134 -17.69658 -16.69235 -16.36873 -15.92412 -15.75592 -15.43658 -14.98418 -14.79246 -14.77472 -14.21736 -14.17499 -13.95130 -13.72252 -13.37098 -13.26925 -12.95227 -12.80573 -12.65298 -12.46951 -12.37604 -12.24976 -11.87010 -11.74851 -11.60791 -11.44823 -11.33369 -11.02151 -11.01573 -10.99818 -10.91398 -10.81414 -10.73550 -10.64326 -10.58850 -10.54924 -9.77782 -9.28453 -9.02813 -8.60683 -8.41661 -8.18004 -6.45885 -6.18189 -3.88379 2.99997 3.13898 3.25519 3.28658 3.31615 3.56865 3.65921 4.22911 4.26813 4.33479 4.46054 4.66077 4.68280 4.76648 4.83844 4.90919 4.98448 5.07138 5.12497 5.15917 5.16699 5.20497 5.26628 5.35256 5.36705 5.42017 5.45421 5.50238 5.56037 5.59678 5.62579 5.65035 5.71868 5.73023 5.74866 5.80734 5.84124 5.86278 5.91157 5.94422 5.99731 6.04983 6.10966 6.16088 6.16862 6.24899 6.69265 6.80394 6.88727 7.61619 7.63675 8.38156 8.64647 9.26799 10.89179 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.002661 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.676409 B =10519.592951 C =12014.130753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.107 4.107 5 C 0.043 3.957 6 N -0.505 5.505 7 C 0.032 3.968 8 C -0.121 4.121 9 C -0.079 4.079 10 H 0.076 0.924 11 C -0.123 4.123 12 C 0.109 3.891 13 N -0.607 5.607 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.149 4.149 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.283 1.283 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.132 3.868 27 C 0.071 3.929 28 H 0.028 0.972 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.269 0.731 51 H 0.096 0.904 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 -19.379 -17.771 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.144 4.144 5 C -0.085 4.085 6 N -0.229 5.229 7 C -0.096 4.096 8 C -0.159 4.159 9 C -0.098 4.098 10 H 0.094 0.906 11 C -0.161 4.161 12 C -0.015 4.015 13 N -0.342 5.342 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.300 4.300 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.208 1.208 24 H -0.200 1.200 25 H -0.200 1.200 26 C 0.008 3.992 27 C -0.038 4.038 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.078 0.922 51 H 0.114 0.886 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.969 -17.553 -18.054 25.878 hybrid contribution 1.603 -1.654 0.868 2.461 sum -4.366 -19.206 -17.187 26.140 Atomic orbital electron populations 1.21826 0.95179 1.01484 1.01878 1.21092 0.95762 0.96607 0.97993 1.21907 1.01242 0.95730 1.01937 1.21564 0.94044 1.00528 0.98308 1.22424 0.96474 0.99452 0.90145 1.64923 1.11221 1.09223 1.37552 1.23384 1.00390 0.88081 0.97757 1.22866 0.94753 0.98107 1.00198 1.20865 0.97614 0.94643 0.96674 0.90594 1.21362 1.01040 0.97447 0.96300 1.21173 0.94530 0.86166 0.99598 1.47138 1.57663 1.14677 1.14741 1.20344 0.78774 0.81541 0.87256 1.90681 1.40437 1.37861 1.69958 1.23551 1.03704 1.07676 0.95057 1.85405 1.75235 1.08155 1.14598 1.22820 1.42428 1.03282 0.99762 0.91028 1.24987 0.95168 0.94505 0.98918 1.70015 1.40446 1.03591 1.36254 0.86234 0.79486 0.77614 0.82228 1.20838 1.19952 1.19959 1.20078 0.99262 0.96360 0.83498 1.20890 0.88975 0.95246 0.98671 0.95342 0.92453 0.92820 0.92939 0.91691 0.92486 0.92956 0.92202 0.92253 0.90765 0.90254 0.94832 0.89893 0.93775 0.90276 0.91153 0.90975 0.90979 0.91956 0.89121 0.89333 0.89247 0.92166 0.88612 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.10 -0.79 2.92 -90.62 -0.26 -1.05 16 3 C -0.15 -1.36 8.95 37.16 0.33 -1.03 16 4 C -0.11 -0.99 4.81 -26.73 -0.13 -1.12 16 5 C 0.04 0.42 4.29 -3.82 -0.02 0.41 16 6 N -0.50 -5.50 5.15 -226.45 -1.17 -6.67 16 7 C 0.03 0.27 6.01 -1.41 -0.01 0.26 16 8 C -0.12 -0.98 6.53 -24.58 -0.16 -1.14 16 9 C -0.08 -0.71 3.20 -91.33 -0.29 -1.00 16 10 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 11 C -0.12 -1.16 5.43 -28.10 -0.15 -1.31 16 12 C 0.11 1.25 6.28 -5.04 -0.03 1.22 16 13 N -0.61 -9.13 3.05 -178.40 -0.54 -9.68 16 14 C 0.53 10.54 7.66 -10.98 -0.08 10.46 16 15 O -0.52 -12.15 15.22 5.56 0.08 -12.06 16 16 C -0.15 -3.10 4.47 36.01 0.16 -2.94 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.13 1.78 5.79 -6.68 -0.04 1.74 16 27 C 0.07 0.77 2.12 -70.41 -0.15 0.62 16 28 H 0.03 0.28 7.58 -51.93 -0.39 -0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 34 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.51 7.47 -51.93 -0.39 0.13 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.87 5.33 -51.93 -0.28 0.59 16 39 H 0.03 0.30 7.80 -51.93 -0.40 -0.10 16 40 H 0.08 0.69 7.81 -51.93 -0.41 0.29 16 41 H 0.04 0.35 7.82 -51.93 -0.41 -0.06 16 42 H 0.08 0.70 7.13 -51.92 -0.37 0.33 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.76 7.14 -51.93 -0.37 0.39 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.07 5.74 -51.93 -0.30 0.77 16 48 H 0.09 1.69 7.96 -51.91 -0.41 1.28 16 49 H 0.09 1.73 7.54 -51.91 -0.39 1.34 16 50 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.10 1.53 5.85 -51.93 -0.30 1.23 16 52 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 LS Contribution 406.27 15.07 6.12 6.12 Total: -1.00 -33.75 406.27 -11.68 -45.43 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -9.38 Total: -1.42 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.29 Total: -8.68 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.98 Total: -42.00 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.75 -11.68 -45.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222305712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.222 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds