Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 C 1.52995 * 109.46898 * 119.99763 * 2 1 3 5 5 C 1.53008 * 109.46873 * 174.99718 * 4 2 1 6 6 N 1.46900 * 109.46992 * 180.02562 * 5 4 2 7 7 C 1.49314 * 111.00263 * 75.47074 * 6 5 4 8 8 C 1.55028 * 102.76430 * 161.50081 * 7 6 5 9 9 C 1.55049 * 103.30572 * 324.39253 * 8 7 6 10 10 H 1.08995 * 109.32606 * 258.11909 * 9 8 7 11 11 C 1.51200 * 107.27634 * 139.27614 * 9 8 7 12 12 C 1.52084 * 114.38849 * 205.43008 * 11 9 8 13 13 N 1.45506 * 110.65031 * 47.79235 * 12 11 9 14 14 C 1.34778 * 119.38627 * 131.23270 * 13 12 11 15 15 O 1.21278 * 120.00140 * 179.72468 * 14 13 12 16 16 C 1.50703 * 119.99723 * 359.73166 * 14 13 12 17 17 S 1.80993 * 109.47026 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99993 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00153 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00523 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99397 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00627 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00544 * 22 20 18 25 25 H 1.48504 * 109.46636 * 60.00103 * 22 20 18 26 26 C 1.45230 * 121.23709 * 310.95752 * 13 12 11 27 27 C 1.47181 * 110.99520 * 190.00260 * 6 5 4 28 28 H 1.09003 * 103.92388 * 318.07140 * 27 6 5 29 29 H 1.09005 * 109.47019 * 300.00036 * 1 2 3 30 30 H 1.09000 * 109.47450 * 59.99857 * 1 2 3 31 31 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46420 * 240.00184 * 2 1 3 33 33 H 1.09001 * 109.47283 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47079 * 299.99688 * 3 2 1 35 35 H 1.08993 * 109.47585 * 60.00067 * 3 2 1 36 36 H 1.09001 * 109.47305 * 55.00589 * 4 2 1 37 37 H 1.09000 * 109.47807 * 294.99806 * 4 2 1 38 38 H 1.09004 * 109.46791 * 59.99665 * 5 4 2 39 39 H 1.09000 * 109.46976 * 300.00597 * 5 4 2 40 40 H 1.09001 * 110.75259 * 279.82355 * 7 6 5 41 41 H 1.08998 * 110.75359 * 43.17923 * 7 6 5 42 42 H 1.09007 * 110.66015 * 82.38571 * 8 7 6 43 43 H 1.09000 * 110.66278 * 205.49695 * 8 7 6 44 44 H 1.08995 * 108.40492 * 328.03885 * 11 9 8 45 45 H 1.09005 * 108.39402 * 85.22863 * 11 9 8 46 46 H 1.08998 * 110.34174 * 286.95088 * 12 11 9 47 47 H 1.09005 * 108.58750 * 167.50208 * 12 11 9 48 48 H 1.09001 * 109.47144 * 59.99673 * 16 14 13 49 49 H 1.09006 * 109.47011 * 299.99863 * 16 14 13 50 50 H 0.97005 * 119.99723 * 179.97438 * 21 20 18 51 51 H 1.08991 * 108.52028 * 157.90563 * 26 13 12 52 52 H 1.09001 * 108.52102 * 275.57349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0545 -1.5240 2.3871 7 6 3.7934 -2.9917 2.3011 8 6 4.7679 -3.5753 3.3561 9 6 6.0089 -2.6525 3.2447 10 1 6.7853 -3.1596 2.6719 11 6 6.5021 -2.3915 4.6500 12 6 7.2763 -1.0927 4.8128 13 7 6.5624 0.0117 4.1899 14 6 6.3804 1.1548 4.8803 15 8 5.7914 2.0842 4.3702 16 6 6.9089 1.2782 6.2862 17 16 6.5096 2.9184 6.9391 18 6 7.2222 2.7901 8.5454 19 1 7.7173 1.8783 8.8454 20 6 7.1484 3.8612 9.4251 21 7 6.5455 4.9728 9.0593 22 14 7.9033 3.7251 11.1283 23 1 7.6901 4.9953 11.8672 24 1 7.2600 2.6091 11.8671 25 1 9.3597 3.4622 11.0046 26 6 6.0475 -0.0925 2.8360 27 6 5.5208 -1.4409 2.4825 28 1 5.8602 -1.6107 1.4607 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6768 1.9563 0.8899 36 1 1.6054 -1.7198 1.2952 37 1 1.7517 -0.1583 2.1370 38 1 3.9995 0.1675 1.1419 39 1 3.8532 -1.3940 0.3002 40 1 2.7597 -3.2162 2.5641 41 1 4.0304 -3.3685 1.3062 42 1 4.3373 -3.5096 4.3554 43 1 5.0245 -4.6066 3.1139 44 1 5.6437 -2.3921 5.3216 45 1 7.1615 -3.2095 4.9405 46 1 8.2634 -1.1805 4.3590 47 1 7.3913 -0.8878 5.8772 48 1 7.9905 1.1431 6.2809 49 1 6.4505 0.5149 6.9150 50 1 6.4935 5.7213 9.6742 51 1 5.2456 0.6354 2.7136 52 1 6.8490 0.1568 2.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222305712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -61.332358 kcal Electronic energy + Delta-G solvation = -28253.258746 eV Core-core repulsion = 24570.389788 eV Total energy + Delta-G solvation = -3682.868958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.78126 -40.18488 -37.93387 -36.73703 -34.58237 -34.43142 -32.58191 -31.24948 -30.12476 -28.66477 -28.04101 -27.67000 -25.70942 -24.57282 -23.45675 -21.98435 -21.51976 -20.82178 -19.77718 -19.08818 -18.20001 -17.34752 -16.98429 -16.87283 -16.72500 -16.42496 -16.05617 -15.77476 -15.62159 -15.15252 -14.95539 -14.69784 -14.51851 -14.45622 -14.13727 -13.82509 -13.80629 -13.56295 -13.33051 -13.15814 -13.06970 -12.92771 -12.85184 -12.71228 -12.53121 -12.46012 -12.22229 -12.05407 -11.79062 -11.71911 -11.64015 -11.53243 -11.42988 -11.34290 -11.29067 -11.12145 -10.85562 -10.25628 -9.66750 -9.36862 -8.67260 -8.33609 -6.12412 1.25678 1.44657 1.46043 1.55513 1.57774 2.12345 2.28192 2.80953 3.00271 3.26355 3.50401 3.58846 3.70261 3.80937 3.91758 3.95212 4.04089 4.08813 4.18304 4.23254 4.27233 4.32728 4.40640 4.43022 4.43914 4.49029 4.54200 4.59814 4.67902 4.70495 4.75063 4.79799 4.83329 4.88850 4.94559 5.00498 5.02163 5.07514 5.10546 5.13210 5.22143 5.25109 5.29707 5.36687 5.41906 5.42407 5.51189 5.63654 5.94669 6.10784 6.20253 6.29776 7.07070 7.15358 8.75529 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.002661 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.676409 B =10519.592951 C =12014.130753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.100 4.100 5 C 0.047 3.953 6 N -0.531 5.531 7 C 0.032 3.968 8 C -0.115 4.115 9 C -0.079 4.079 10 H 0.101 0.899 11 C -0.119 4.119 12 C 0.098 3.902 13 N -0.593 5.593 14 C 0.528 3.472 15 O -0.566 6.566 16 C -0.120 4.120 17 S -0.154 6.154 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.279 1.279 24 H -0.262 1.262 25 H -0.260 1.260 26 C 0.132 3.868 27 C 0.070 3.930 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.106 0.894 50 H 0.271 0.729 51 H 0.063 0.937 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 -23.090 -17.951 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.138 4.138 5 C -0.081 4.081 6 N -0.256 5.256 7 C -0.095 4.095 8 C -0.153 4.153 9 C -0.098 4.098 10 H 0.119 0.881 11 C -0.157 4.157 12 C -0.024 4.024 13 N -0.326 5.326 14 C 0.316 3.684 15 O -0.445 6.445 16 C -0.271 4.271 17 S 0.073 5.927 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.204 1.204 24 H -0.186 1.186 25 H -0.185 1.185 26 C 0.008 3.992 27 C -0.039 4.039 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.127 0.873 49 H 0.124 0.876 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.554 -21.331 -18.254 28.442 hybrid contribution 1.156 -0.565 0.815 1.523 sum -3.399 -21.896 -17.439 28.197 Atomic orbital electron populations 1.21815 0.94546 1.02098 1.01765 1.21076 0.96258 0.95760 0.97930 1.21905 1.00816 0.96577 1.01536 1.21493 0.93954 1.00672 0.97656 1.22363 0.96486 0.98659 0.90590 1.64886 1.11431 1.11001 1.38279 1.23436 1.00723 0.86485 0.98813 1.22842 0.93906 0.99188 0.99359 1.20948 0.98654 0.93839 0.96365 0.88096 1.21348 1.00841 0.96988 0.96488 1.21546 0.95666 0.85809 0.99391 1.47163 1.56460 1.13994 1.14997 1.20225 0.78642 0.82480 0.87068 1.90664 1.42962 1.40034 1.70835 1.23352 1.05007 1.03032 0.95731 1.85623 1.76317 1.14581 1.16167 1.23156 1.42442 1.03978 0.99677 0.89824 1.26158 0.95424 0.93853 1.03794 1.70192 1.42003 1.04614 1.38063 0.84988 0.78959 0.77967 0.75990 1.20440 1.18607 1.18498 1.20205 0.98710 0.97680 0.82595 1.20852 0.89134 0.94196 0.99746 0.93981 0.93559 0.91968 0.91942 0.90282 0.93168 0.91862 0.94044 0.91230 0.93532 0.92200 0.93295 0.89925 0.92334 0.91435 0.88612 0.92502 0.87760 0.89384 0.89435 0.87266 0.87616 0.92011 0.91901 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.19 71.98 0.66 -1.46 16 2 C -0.09 -1.48 2.92 -10.79 -0.03 -1.51 16 3 C -0.15 -2.87 8.95 71.98 0.64 -2.22 16 4 C -0.10 -1.87 4.81 30.60 0.15 -1.72 16 5 C 0.05 0.92 4.29 86.31 0.37 1.29 16 6 N -0.53 -11.14 5.15 -870.36 -4.48 -15.62 16 7 C 0.03 0.48 6.01 86.53 0.52 1.00 16 8 C -0.12 -1.48 6.53 31.99 0.21 -1.27 16 9 C -0.08 -1.14 3.20 -11.26 -0.04 -1.18 16 10 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 11 C -0.12 -1.85 5.43 29.70 0.16 -1.68 16 12 C 0.10 2.00 6.28 86.26 0.54 2.55 16 13 N -0.59 -17.52 3.05 -836.72 -2.56 -20.07 16 14 C 0.53 21.40 7.66 87.66 0.67 22.07 16 15 O -0.57 -28.30 15.22 -3.02 -0.05 -28.34 16 16 C -0.12 -5.03 4.47 71.24 0.32 -4.71 16 17 S -0.15 -8.84 20.57 -56.49 -1.16 -10.00 16 18 C -0.54 -31.57 9.50 67.95 0.65 -30.92 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.94 13.22 21.65 0.29 -56.65 16 22 Si 1.00 43.95 29.55 68.60 2.03 45.97 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 C 0.13 3.53 5.79 85.35 0.49 4.03 16 27 C 0.07 1.39 2.12 43.02 0.09 1.48 16 28 H 0.04 0.73 7.58 -2.39 -0.02 0.71 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.00 6.57 -2.39 -0.02 0.99 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.14 7.47 -2.39 -0.02 1.13 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.39 5.33 -2.39 -0.01 1.38 16 39 H 0.05 0.79 7.80 -2.39 -0.02 0.77 16 40 H 0.08 1.22 7.81 -2.39 -0.02 1.21 16 41 H 0.06 0.71 7.82 -2.39 -0.02 0.70 16 42 H 0.07 1.04 7.13 -2.38 -0.02 1.02 16 43 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 1.08 7.14 -2.39 -0.02 1.06 16 45 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.09 1.86 5.74 -2.38 -0.01 1.84 16 48 H 0.11 4.09 7.96 -2.40 -0.02 4.07 16 49 H 0.11 4.05 7.54 -2.39 -0.02 4.03 16 50 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 51 H 0.06 2.14 5.85 -2.39 -0.01 2.12 16 52 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 Total: -1.00 -77.56 406.27 0.82 -76.74 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.88 Total: 21.06 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 5.87 Total: -13.08 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -6.75 Total: -92.35 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -77.56 0.82 -76.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222305712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.405 kcal (2) G-P(sol) polarization free energy of solvation -77.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds